Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008770

Physical Location & Seq

Genomic Coordinates Forward (+)

2357847 .. 2366950

Gene Structure 9104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG034700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3774 bp

ATGGGCGGCGACCGTCACAACACCACCCGGCCGGACTGTTCTTCGTCTTCTTCTTCTTCCTCCGAGTCGCAGCGAGTCCGGCTCTCTCAGACGCCGATTCTGTTGCTGGTTTGTTTCCATAAGGCGATGCGAGCCGAGCTCGCCGATCTCCGCCACGTCACCGAGGCCGCCTTGGACGGTGAATTCAGAGGCCGCGGCTTTGTTCTCGAGGTTCTGCGACGGTTTGAGTTCCTCAAGCTCGCGTATAAGTACCACTGCTCTGCTGAGGATGAGGTTATTTTTCTAGCGCTAGATGGACGAACAAAAAACATAGCTTGTACATATTCGTTGGAGCATAGGAGTATAGATGGTCTTTTTGAATCTATTTTTAGTCGTTTGGATGTATTGTTAGAGGAAAGTAAAGATATTTCAAAGGAATTTCAGGAACTTGTGTTCTGCATCGGGACGCTCCAGGCATTCATTTGCCAGCATATGGTGAAAGAAGAAGAACAGGTTTTTCCTTTGCTCCTGCAGCAATTCTCTGTGATGGAGCAGGCTTCACTTGTGTGGCAGTTCATGTGTAGTATACCTTTAGTGCTGCTAGAGGATCTTCTACCATGGATGATCTCCTCTCTTCAAACTGATGAAAAAGAGGAAGTCATACATTGCATAAAAGAAATTGTACCTGATGAAAAATATCTCCAAGAGGTAGTAAGCTCGTGGCTTGCTAACAAGGGCCAGGCTCGACACACTGGTGATGATGAATCTGCAGATATGAAAAAGTTACTCAAGTCTCATTCCCCTAACAGGTTCTTTAAAGAAAATTGGAGTTGCATGAAGAAAGACAGCATCCAAACTGATACTGGATACAGTCCTGTTGATGGGCTTCATCTTTGGCATGGTGCCATAAGGAAAGATCTAGAAAAAATTATGGGAGAGCTTTATCAATTGAGAAGCTCAGTCAATTTTCTAGATGTTGATTCAATAGTTGTCCAGCTAAAGTTTCTTGCTGATGTCCTTACTTTCTACAGCAATGCGTTGGAGAAGTTAGTTCACCCTGTGTTAAGTGAACTTGTCAATGGCTGTCTGTACCCTTCTATTGAGAAATTTCCCAATGAAAGCCTTCTGGAAAGTTTGCAGAATTTACTATACTATAGCCTTGAAAATGGAACACCTTTGGGCAAATTTGTTGAAAAGCTTTGCCGGGAATTTGAGTGTCTTGTGGTGGGAGTCCGCAAGCATTTTGCTGTCCACGAAACAGAGGTATTTCCCATTATAAGGAAGAACTGTAGCCATGAAATGCAACAGAAACTTGTGTATGTCAGCCTTCATATTATGCCACTTGGGTTGCTGAAGTGTGTGACTACTTGGTTTTCAGCTTGCTTATCTGAGGATGAGTCCAGGTCAATTCTTAGCAGCATGAAGCAGCGAGATTTCGTAGTCAATGAATCTTTTGTATCCCTGTTACATGAGTGGTTCCGTATTGGCCATTCAGGTAAAACCTCAATTGAAAATTTCCGAGAGGACTTGCAGCAAATATTCAAGAGCAGATGCACTTTCTTATGCAACCAATTACATGCCAGTACTGCGTGTTCATCTGTAAGCTCCAATATGCAACATCAAGGGAAATCAAACACTGGGGTAATGAAACTAATTTCTTCAAACAAGGGAAAGAACTCTATGCCATACTCTTCATCTTTTGCCCCCGACTCTTCTAAGTATTCTGAGATGACAAACTCAAGAGGAATCAATCTCCAAGTATACTTCTCTGGAATGAAAACATCATATCATATTTCTGAAAGTCTTAGTGGAGAAAATTTGAGTGGTTACGGTCTCCATGAACCAAAACCAATAGATCTCATATTTTTCTTCCACAAGGCTCTCAGGAAGGATTTGGATTACCTTGTCCTTGGTTCAGCTGAGTTGGCTGAAAATGCAGCTTCCCTTACAAACTTTTGCCGGCGCTTTAGTCTCATACAGTTCTTACATCAAATACATAGTGAAGCAGAGGACGAGGTTGCCTTTCCAGCCTTGGAGGCAAAGGGAAAATGTCAAAACATTAGCCAGTCTTACACACTGGACCACAAACTAGAGGTTGAACTCTTCCAAAAAATATCCTTCATTCTAGATGAGATGTCTAAATTGCATTTTTCAGTTTCTATGGTTGATTCAAACACAATGGACCAGATGTCGCCAAAGCACTATCAGTTGTGCATGAGGCTTCATGGTATTTGCAAATCTATGAGCAAATTACTGACTGACCATATTCATCGTGAAGAAGTTGAACTTTGGCCCTTGTTTAGAGAATGCTTCTCCATTGAAGAGCAAGAAAGGATTGTGGGGTGCATACTTGGTAGAACAGAAGCGAAAATATTACAAGATATGATACCCTGGCTGATGGAATCTTTGACACCAGAAGAACAGCATGCCATGATATCTATATGGCGCCAGGTCACAAGAAACACAATGTTTGATGAGTGGTTGAAAGAATGGTGGGAGGGGTATGATGCAGGCAAGGTGGTGCAGGAGTCAAGTCTTCCTCCTTCAAAGACTGTAGATCCCTTGGACGTTGTCTCTACGTACTTGTGTGGACTGGATGAACAAGAAAGAAGTATCTTCAACAGAAACATCGACTTTCCCGAAAAAGATTCCCCTGATACTAATACTAAGCCATTACAAATCAGTGAGGTGAATCATAAGCTGAGGGATGCTGATAATGACCAATGTAATTACAACTCTACAGAATCTGGAAGTCTTGCAGAAGGTAAGAAGATGAAGTATGAAGACATTGAAAATGCCATAGATCAAATCAATGATCCAGGACAACTTTTTCAAGCAAGTCAGAAAACGGATTATTGTGAGTGCCTGCTGACACTAAGTCAAGAGGATCTGTTGACTGCAATAAGTAAAATCTCCCGTGACTCTTCCTTGGATCCTCAGAAGAAACCATATATGATGCAGAGCCTGCTATCGAGCCATTGGAGAGTCAGACAACACTCTCAGTTAACTGTTGCAAGTAATGGGAAAGAATTCCCTGGTCAGCATCCATCCTATCAGGACCCTTTTGGGCTAACATTTGGTTGTAAACACTATAAGAGGAACTGTAAGCTTGTTGCTCCATGTTGCAACCAGCTCTACACTTGCATACGCTGCCATGATGAGATGGCGGCCGATCACACTATAGATAGGAGATCTGTAACAAAGATGATGTGCATGAAATGCTTGAAAATTCAGCCAATCGGGCCCACATGCTCAACTGCATCCTGCAGTGATTTATCTATGGCAAGATACTTTTGCAAAATCTGCAAAATTTTTGATGATGAAAGGATGATCTACCATTGCCCGTACTGTAACTTGTGCCGAGTTGGAAAGGGGTTGGGTATTGACTATTTCCATTGCATGACTTGTAATGCTTGCATGTCCTGTTCTCTCTTCAAGCATACATGCAGAGAGAAAAGCTTTATGGATAATTGCCCTATTTGCCATGAGGACATCTTCACGAGCAACTCTCCAGTAAAAGCCCTTCCATGTGGTCATTCAATGCACTCAACATGTTTTCAGGCCTACACCTTTACTAATTATACCTGCCCAATCTGCGGCAAGTCACTTGGGGACATGCAGATGTTATTTAGAATGTATGATGCATATTTGGCTGGAGAGAAGCTTCCAGATGAGTATTCTGGCCGAACTCAGGCCATACTATGCAATGACTGTGAGAAGAAAGGAACTGCTCCCTTTCATTGGCTTTACCGCAAGTGCTCCTCTTGTGGTTCATACAATACCAGGCTTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010106 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019725 GO:0019787 GO:0019941 GO:0030003 GO:0030163 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0033554 GO:0036211 GO:0042592 GO:0042594 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051603 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0071496 GO:0071704 GO:0098771 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemerythrin zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

1257

Amino Acids

143.84

Weight (kDa)

5.96

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hemerythrin	PF01814	38 - 169	1.8e-08	Hemerythrin HHE cation binding domain
zf-CHY	PF05495	1021 - 1090	1e-17	CHY zinc finger
zf-RING_2	PF13639	1149 - 1192	3.7e-09	Ring finger domain
zinc_ribbon_6	PF14599	1198 - 1255	8.7e-22	Zinc-ribbon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18910 AT1G74770 AT1G74770
fragaria_vesca	FvH4_5g15780 FvH4_5g15780 FvH4_5g15780
malus_domestica	MD14G1191800.v1.1
prunus_persica	Prupe.1G314300_v2.0.a1 Prupe.5G184400_v2.0.a1 Prupe.5G184400_v2.0.a1
pyrus_communis	pycom14g15950
rosa_chinensis	RchiOBHm_Chr7g0180341
rosa_laevigata	RLG00000005275
rosa_multiflora	Rmu_sc0003526.1_g000012 Rmu_ssc0000099.1_g000006
rosa_roxburghii	Rroxscaffold_3G00244490 Rroxscaffold_3G00272970
rosa_rugosa	Rorug06G0432400
rosa_samantha	Rh7AG032800 Rh7BG032800 Rh7CG034700 Rh7DG033400
rosa_wichuraiana	Rw7G002740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1256
Acc36I	ACCTGC	1 cut(s)	3572
AccB1I	GGYRCC	2 cut(s)	881, 2424
AccB7I	CCANNNNNTGG	1 cut(s)	472
AccI	GTMKAC	2 cut(s)	565, 1740
AccII	CGCG	2 cut(s)	195, 242
AciI	CCGC	9 cut(s)	6, 151, 168, 193, 195, 1213, 3146, 3576, 3730
AclWI	GGATC	6 cut(s)	594, 2531, 2789, 2874, 2906, 2919
AcoI	YGGCCR	4 cut(s)	29, 1465, 3147, 3661
AcuI	CTGAAG	1 cut(s)	1352
AcyI	GRCGYC	2 cut(s)	92, 2425
AdeI	CACNNNGTG	1 cut(s)	1039
AfaI	GTAC	7 cut(s)	251, 319, 663, 1070, 1564, 2561, 3326
AfeI	AGCGCT	1 cut(s)	288
AfiI	CCNNNNNNNGG	7 cut(s)	472, 786, 860, 1257, 3575, 3670, 3720
AflIII	ACRYGT	1 cut(s)	3530
AhdI	GACNNNNNGTC	2 cut(s)	2167, 2856
AjiI	CACGTC	1 cut(s)	157
AjnI	CCWGG	8 cut(s)	450, 717, 1379, 2369, 2427, 2797, 3013, 3761
AleI	CACNNNNGTG	2 cut(s)	544, 732
AloI	GAACNNNNNNTCC	2 cut(s)	416, 448
Alw21I	GWGCWC	2 cut(s)	141, 3740
Alw26I	GTCTC	4 cut(s)	777, 1817, 1955, 2557
AlwI	GGATC	6 cut(s)	594, 2531, 2789, 2874, 2906, 2919
AlwNI	CAGNNNCTG	2 cut(s)	2726, 2944
Ama87I	CYCGRG	1 cut(s)	206
Aor51HI	AGCGCT	1 cut(s)	288
ApaI	GGGCCC	1 cut(s)	3225
ApeKI	GCWGC	8 cut(s)	70, 511, 577, 1395, 1405, 1510, 1916, 3129
Asp700I	GAANNNNTTC	2 cut(s)	1101, 3008
AspLEI	GCGC	3 cut(s)	289, 1944, 2427
AspS9I	GGNCC	7 cut(s)	715, 2059, 2161, 2271, 3037, 3221, 3222
AsuC2I	CCSGG	2 cut(s)	28, 1184
AsuHPI	GGTGA	6 cut(s)	151, 191, 487, 746, 1025, 2680
AvaI	CYCGRG	1 cut(s)	206
AvaII	GGWCC	3 cut(s)	2059, 2161, 3037
BaeGI	GKGCMC	1 cut(s)	3225
BalI	TGGCCA	1 cut(s)	1467
BamHI	GGATCC	1 cut(s)	2911
BanI	GGYRCC	2 cut(s)	881, 2424
BanII	GRGCYC	2 cut(s)	141, 3225
BarI	GAAGNNNNNNTAC	2 cut(s)	3486, 3518
BauI	CACGAG	2 cut(s)	697, 3478
BbsI	GAAGAC	3 cut(s)	39, 2507, 2769
Bbv12I	GWGCWC	2 cut(s)	141, 3740
BbvCI	CCTCAGC	2 cut(s)	264, 2681
BbvI	GCAGC	8 cut(s)	82, 523, 564, 1407, 1417, 1522, 1928, 3116
BccI	CCATC	7 cut(s)	287, 341, 520, 854, 2371, 3034, 3136
BcgI	CGANNNNNNTGC	2 cut(s)	85, 119
BciT130I	CCWGG	8 cut(s)	452, 719, 1381, 2371, 2429, 2799, 3015, 3763
BciVI	GTATCC	2 cut(s)	839, 1447
BcnI	CCSGG	2 cut(s)	28, 1184
BcoDI	GTCTC	4 cut(s)	777, 1817, 1955, 2557
BfaI	CTAG	7 cut(s)	284, 290, 581, 899, 950, 2069, 2105
BfmI	CTRYAG	9 cut(s)	509, 747, 1006, 1132, 1267, 2532, 2718, 3159, 3244
BfoI	RGCGCY	3 cut(s)	290, 1945, 2428
BfuAI	ACCTGC	1 cut(s)	3572
BfuI	GTATCC	2 cut(s)	839, 1447
BglI	GCCNNNNNGGC	2 cut(s)	2015, 3220
BglII	AGATCT	3 cut(s)	895, 1834, 3170
BmcAI	AGTACT	1 cut(s)	1564
Bme18I	GGWCC	3 cut(s)	2059, 2161, 3037
BmeRI	GACNNNNNGTC	2 cut(s)	2167, 2856
BmeT110I	CYCGRG	1 cut(s)	206
BmgBI	CACGTC	1 cut(s)	157
BmgT120I	GGNCC	7 cut(s)	715, 2059, 2161, 2271, 3037, 3221, 3222
BmiI	GGNNCC	6 cut(s)	883, 1457, 2426, 2913, 3039, 3223
BmrI	ACTGGG	1 cut(s)	1626
BmuI	ACTGGG	1 cut(s)	1626
BpiI	GAAGAC	3 cut(s)	39, 2507, 2769
BplI	GAGNNNNNCTC	6 cut(s)	66, 98, 123, 155, 3472, 3504
BpmI	CTGGAG	3 cut(s)	434, 3474, 3654
Bpu10I	CCTNAGC	2 cut(s)	264, 2681
BpuEI	CTTGAG	3 cut(s)	218, 752, 1702
BpuMI	CCSGG	2 cut(s)	28, 1184
BsaAI	YACGTR	1 cut(s)	2559
BsaHI	GRCGYC	2 cut(s)	92, 2425
BsaI	GGTCTC	1 cut(s)	1817
Bsc4I	CCNNNNNNNGG	7 cut(s)	472, 786, 860, 1257, 3575, 3670, 3720
Bse118I	RCCGGY	1 cut(s)	1938
Bse1I	ACTGG	8 cut(s)	736, 847, 1560, 1621, 2044, 2061, 2577, 3491
Bse3DI	GCAATG	5 cut(s)	643, 1018, 3316, 3373, 3691
BseBI	CCWGG	8 cut(s)	452, 719, 1381, 2371, 2429, 2799, 3015, 3763
BseLI	CCNNNNNNNGG	7 cut(s)	472, 786, 860, 1257, 3575, 3670, 3720
BseMI	GCAATG	5 cut(s)	643, 1018, 3316, 3373, 3691
BseNI	ACTGG	8 cut(s)	736, 847, 1560, 1621, 2044, 2061, 2577, 3491
BseRI	GAGGAG	2 cut(s)	598, 3730
BseSI	GKGCMC	1 cut(s)	3225
BseX3I	CGGCCG	2 cut(s)	29, 3147
BseXI	GCAGC	8 cut(s)	82, 523, 564, 1407, 1417, 1522, 1928, 3116
BsgI	GTGCAG	1 cut(s)	2522
Bsh1236I	CGCG	2 cut(s)	195, 242
Bsh1285I	CGRYCG	3 cut(s)	13, 32, 3150
BshNI	GGYRCC	2 cut(s)	881, 2424
BsiEI	CGRYCG	3 cut(s)	13, 32, 3150
BsiHKAI	GWGCWC	2 cut(s)	141, 3740
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	5 cut(s)	28, 32, 79, 1183, 1939
BslFI	GGGAC	2 cut(s)	457, 3605
BslI	CCNNNNNNNGG	7 cut(s)	472, 786, 860, 1257, 3575, 3670, 3720
BsmAI	GTCTC	4 cut(s)	777, 1817, 1955, 2557
BsmFI	GGGAC	2 cut(s)	457, 3605
BsmI	GAATGC	2 cut(s)	455, 2291
Bso31I	GGTCTC	1 cut(s)	1817
BsoBI	CYCGRG	1 cut(s)	206
Bsp120I	GGGCCC	1 cut(s)	3221
Bsp1286I	GDGCHC	3 cut(s)	141, 3225, 3740
Bsp1407I	TGTACA	1 cut(s)	317
Bsp19I	CCATGG	1 cut(s)	596
BspACI	CCGC	9 cut(s)	6, 151, 168, 193, 195, 1213, 3146, 3576, 3730
BspFNI	CGCG	2 cut(s)	195, 242
BspLI	GGNNCC	6 cut(s)	883, 1457, 2426, 2913, 3039, 3223
BspMAI	CTGCAG	3 cut(s)	513, 751, 3248
BspMI	ACCTGC	1 cut(s)	3572
BspPI	GGATC	6 cut(s)	594, 2531, 2789, 2874, 2906, 2919
BspQI	GCTCTTC	1 cut(s)	2295
BspT107I	GGYRCC	2 cut(s)	881, 2424
BspTNI	GGTCTC	1 cut(s)	1817
BsrDI	GCAATG	5 cut(s)	643, 1018, 3316, 3373, 3691
BsrFI	RCCGGY	1 cut(s)	1938
BsrGI	TGTACA	1 cut(s)	317
BsrI	ACTGG	8 cut(s)	736, 847, 1560, 1621, 2044, 2061, 2577, 3491
BssAI	RCCGGY	1 cut(s)	1938
BssNAI	GTATAC	2 cut(s)	566, 1741
BssNI	GRCGYC	2 cut(s)	92, 2425
BssSI	CACGAG	2 cut(s)	697, 3478
BssT1I	CCWWGG	6 cut(s)	171, 596, 1888, 2010, 2541, 2907
Bst1107I	GTATAC	2 cut(s)	566, 1741
Bst2BI	CACGAG	2 cut(s)	697, 3478
Bst2UI	CCWGG	8 cut(s)	452, 719, 1381, 2371, 2429, 2799, 3015, 3763
Bst6I	CTCTTC	7 cut(s)	618, 1675, 1696, 2087, 2295, 2908, 3416
BstACI	GRCGYC	2 cut(s)	92, 2425
BstAPI	GCANNNNNTGC	4 cut(s)	2944, 3129, 3198, 3282
BstAUI	TGTACA	1 cut(s)	317
BstBAI	YACGTR	1 cut(s)	2559
BstDSI	CCRYGG	2 cut(s)	193, 596
BstFNI	CGCG	2 cut(s)	195, 242
BstH2I	RGCGCY	3 cut(s)	290, 1945, 2428
BstHHI	GCGC	3 cut(s)	289, 1944, 2427
BstMAI	GTCTC	4 cut(s)	777, 1817, 1955, 2557
BstMCI	CGRYCG	3 cut(s)	13, 32, 3150
BstNI	CCWGG	8 cut(s)	452, 719, 1381, 2371, 2429, 2799, 3015, 3763
BstNSI	RCATGY	7 cut(s)	1559, 2408, 3231, 3400, 3426, 3534, 3598
BstSFI	CTRYAG	9 cut(s)	509, 747, 1006, 1132, 1267, 2532, 2718, 3159, 3244
BstSLI	GKGCMC	1 cut(s)	3225
BstSNI	TACGTA	1 cut(s)	2559
BstUI	CGCG	2 cut(s)	195, 242
BstV1I	GCAGC	8 cut(s)	82, 523, 564, 1407, 1417, 1522, 1928, 3116
BstV2I	GAAGAC	3 cut(s)	39, 2507, 2769
BstX2I	RGATCY	7 cut(s)	586, 895, 1834, 2536, 2866, 2911, 3170
BstYI	RGATCY	7 cut(s)	586, 895, 1834, 2536, 2866, 2911, 3170
BstZ17I	GTATAC	2 cut(s)	566, 1741
BstZI	CGGCCG	2 cut(s)	29, 3147
BsuI	GTATCC	2 cut(s)	839, 1447
BtgI	CCRYGG	2 cut(s)	193, 596
BtgZI	GCGATG	1 cut(s)	140
BtrI	CACGTC	1 cut(s)	157
BtsI	GCAGTG	2 cut(s)	253, 3253
BtsIMutI	CAGTG	6 cut(s)	253, 729, 1614, 2054, 2668, 3253
BveI	ACCTGC	1 cut(s)	3572
CaiI	CAGNNNCTG	2 cut(s)	2726, 2944
CfoI	GCGC	3 cut(s)	289, 1944, 2427
Cfr10I	RCCGGY	1 cut(s)	1938
Cfr13I	GGNCC	7 cut(s)	715, 2059, 2161, 2271, 3037, 3221, 3222
Cfr42I	CCGCGG	1 cut(s)	196
CseI	GACGC	2 cut(s)	100, 454
Csp6I	GTAC	7 cut(s)	250, 318, 662, 1069, 1563, 2560, 3325
CspCI	CAANNNNNGTGG	2 cut(s)	1308, 1343
CviQI	GTAC	7 cut(s)	250, 318, 662, 1069, 1563, 2560, 3325
DinI	GGCGCC	1 cut(s)	2426
DraI	TTTAAA	1 cut(s)	796
DraIII	CACNNNGTG	1 cut(s)	1039
DriI	GACNNNNNGTC	2 cut(s)	2167, 2856
EaeI	YGGCCR	4 cut(s)	29, 1465, 3147, 3661
EagI	CGGCCG	2 cut(s)	29, 3147
Eam1104I	CTCTTC	7 cut(s)	618, 1675, 1696, 2087, 2295, 2908, 3416
Eam1105I	GACNNNNNGTC	2 cut(s)	2167, 2856
EarI	CTCTTC	7 cut(s)	618, 1675, 1696, 2087, 2295, 2908, 3416
EciI	GGCGGA	1 cut(s)	140
Ecl136II	GAGCTC	1 cut(s)	139
EclXI	CGGCCG	2 cut(s)	29, 3147
Eco105I	TACGTA	1 cut(s)	2559
Eco130I	CCWWGG	6 cut(s)	171, 596, 1888, 2010, 2541, 2907
Eco147I	AGGCCT	1 cut(s)	3542
Eco24I	GRGCYC	2 cut(s)	141, 3225
Eco31I	GGTCTC	1 cut(s)	1817
Eco32I	GATATC	1 cut(s)	2415
Eco47I	GGWCC	3 cut(s)	2059, 2161, 3037
Eco47III	AGCGCT	1 cut(s)	288
Eco52I	CGGCCG	2 cut(s)	29, 3147
Eco53kI	GAGCTC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	1352
Eco88I	CYCGRG	1 cut(s)	206
EcoICRI	GAGCTC	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	3037
EcoRI	GAATTC	2 cut(s)	182, 3008
EcoRII	CCWGG	8 cut(s)	450, 717, 1379, 2369, 2427, 2797, 3013, 3761
EcoRV	GATATC	1 cut(s)	2415
EcoT14I	CCWWGG	6 cut(s)	171, 596, 1888, 2010, 2541, 2907
EcoT22I	ATGCAT	1 cut(s)	3625
EcoT38I	GRGCYC	2 cut(s)	141, 3225
EgeI	GGCGCC	1 cut(s)	2426
EheI	GGCGCC	1 cut(s)	2426
ErhI	CCWWGG	6 cut(s)	171, 596, 1888, 2010, 2541, 2907
FalI	AAGNNNNNCTT	2 cut(s)	2250, 2282
FaqI	GGGAC	2 cut(s)	457, 3605
FauNDI	CATATG	1 cut(s)	471
FblI	GTMKAC	2 cut(s)	565, 1740
FriOI	GRGCYC	2 cut(s)	141, 3225
FspBI	CTAG	7 cut(s)	284, 290, 581, 899, 950, 2069, 2105
GlaI	GCGC	3 cut(s)	288, 1943, 2426
GsuI	CTGGAG	3 cut(s)	434, 3474, 3654
HaeII	RGCGCY	3 cut(s)	290, 1945, 2428
HapII	CCGG	5 cut(s)	28, 32, 79, 1183, 1939
HgaI	GACGC	2 cut(s)	100, 454
HhaI	GCGC	3 cut(s)	289, 1944, 2427
Hin1I	GRCGYC	2 cut(s)	92, 2425
Hin6I	GCGC	3 cut(s)	287, 1942, 2425
HinP1I	GCGC	3 cut(s)	287, 1942, 2425
HincII	GTYRAC	2 cut(s)	2874, 2985
HindII	GTYRAC	2 cut(s)	2874, 2985
HindIII	AAGCTT	4 cut(s)	1175, 3086, 3436, 3641
HpaI	GTTAAC	1 cut(s)	2985
HpaII	CCGG	5 cut(s)	28, 32, 79, 1183, 1939
HphI	GGTGA	6 cut(s)	151, 191, 487, 746, 1025, 2680
Hpy166II	GTNNAC	9 cut(s)	566, 1033, 1049, 1231, 1741, 2570, 2874, 2985, 3065
Hpy8I	GTNNAC	9 cut(s)	566, 1033, 1049, 1231, 1741, 2570, 2874, 2985, 3065
Hpy99I	CGWCG	1 cut(s)	222
HpyAV	CCTTC	8 cut(s)	1083, 1112, 1316, 1861, 2107, 2532, 2735, 3512
HpyCH4IV	ACGT	3 cut(s)	156, 2547, 2558
HpySE526I	ACGT	3 cut(s)	156, 2547, 2558
Hsp92I	GRCGYC	2 cut(s)	92, 2425
HspAI	GCGC	3 cut(s)	287, 1942, 2425
KasI	GGCGCC	1 cut(s)	2424
KroI	GCCGGC	1 cut(s)	1938
KroNI	GCCGGC	1 cut(s)	1940
KspAI	GTTAAC	1 cut(s)	2985
KspI	CCGCGG	1 cut(s)	196
LguI	GCTCTTC	1 cut(s)	2295
LmnI	GCTCC	8 cut(s)	331, 453, 510, 529, 1589, 3100, 3715, 3743
Lsp1109I	GCAGC	8 cut(s)	82, 523, 564, 1407, 1417, 1522, 1928, 3116
MaeI	CTAG	7 cut(s)	284, 290, 581, 899, 950, 2069, 2105
MaeII	ACGT	3 cut(s)	156, 2547, 2558
MfeI	CAATTG	2 cut(s)	926, 1485
MflI	RGATCY	7 cut(s)	586, 895, 1834, 2536, 2866, 2911, 3170
MhlI	GDGCHC	3 cut(s)	141, 3225, 3740
MlsI	TGGCCA	1 cut(s)	1467
MluNI	TGGCCA	1 cut(s)	1467
Mly113I	GGCGCC	1 cut(s)	2425
MlyI	GAGTC	8 cut(s)	74, 84, 1218, 1385, 1682, 2516, 2894, 2973
MmeI	TCCRAC	3 cut(s)	309, 999, 3325
Mox20I	TGGCCA	1 cut(s)	1467
Mph1103I	ATGCAT	1 cut(s)	3625
MroNI	GCCGGC	1 cut(s)	1938
MroXI	GAANNNNTTC	2 cut(s)	1101, 3008
MscI	TGGCCA	1 cut(s)	1467
MseI	TTAA	3 cut(s)	795, 1043, 2984
MslI	CAYNNNNRTG	3 cut(s)	544, 732, 3599
Msp20I	TGGCCA	1 cut(s)	1467
MspA1I	CMGCKG	2 cut(s)	195, 1898
MspI	CCGG	5 cut(s)	28, 32, 79, 1183, 1939
MunI	CAATTG	2 cut(s)	926, 1485
Mva1269I	GAATGC	2 cut(s)	455, 2291
MvaI	CCWGG	8 cut(s)	452, 719, 1381, 2371, 2429, 2799, 3015, 3763
MvnI	CGCG	2 cut(s)	195, 242
NaeI	GCCGGC	1 cut(s)	1940
NarI	GGCGCC	1 cut(s)	2425
NciI	CCSGG	2 cut(s)	28, 1184
NcoI	CCATGG	1 cut(s)	596
NdeI	CATATG	1 cut(s)	471
NgoMIV	GCCGGC	1 cut(s)	1938
NlaIV	GGNNCC	6 cut(s)	883, 1457, 2426, 2913, 3039, 3223
NmeAIII	GCCGAG	2 cut(s)	160, 3365
NmuCI	GTSAC	6 cut(s)	14, 157, 1339, 2431, 2897, 3582
NsiI	ATGCAT	1 cut(s)	3625
NspI	RCATGY	7 cut(s)	1559, 2408, 3231, 3400, 3426, 3534, 3598
OliI	CACNNNNGTG	2 cut(s)	544, 732
PaeI	GCATGC	1 cut(s)	2408
PaeR7I	CTCGAG	1 cut(s)	206
PceI	AGGCCT	1 cut(s)	3542
PciI	ACATGT	1 cut(s)	3530
PciSI	GCTCTTC	1 cut(s)	2295
PcsI	WCGNNNNNNNCGW	1 cut(s)	2616
PctI	GAATGC	2 cut(s)	455, 2291
PdiI	GCCGGC	1 cut(s)	1940
PdmI	GAANNNNTTC	2 cut(s)	1101, 3008
PflFI	GACNNNGTC	1 cut(s)	2549
PflMI	CCANNNNNTGG	1 cut(s)	472
PfoI	TCCNGGA	1 cut(s)	2797
PleI	GAGTC	8 cut(s)	73, 83, 1217, 1384, 1682, 2515, 2894, 2972
PluTI	GGCGCC	1 cut(s)	2428
PpsI	GAGTC	8 cut(s)	73, 83, 1217, 1384, 1682, 2515, 2894, 2972
Ppu21I	YACGTR	1 cut(s)	2559
PpuMI	RGGWCCY	1 cut(s)	3037
PscI	ACATGT	1 cut(s)	3530
PsiI	TTATAA	1 cut(s)	1256
Psp124BI	GAGCTC	1 cut(s)	141
Psp5II	RGGWCCY	1 cut(s)	3037
Psp6I	CCWGG	8 cut(s)	450, 717, 1379, 2369, 2427, 2797, 3013, 3761
PspGI	CCWGG	8 cut(s)	450, 717, 1379, 2369, 2427, 2797, 3013, 3761
PspN4I	GGNNCC	6 cut(s)	883, 1457, 2426, 2913, 3039, 3223
PspOMI	GGGCCC	1 cut(s)	3221
PspPI	GGNCC	7 cut(s)	715, 2059, 2161, 2271, 3037, 3221, 3222
PspPPI	RGGWCCY	1 cut(s)	3037
PsrI	GAACNNNNNNTAC	2 cut(s)	1555, 1587
PstI	CTGCAG	3 cut(s)	513, 751, 3248
PstNI	CAGNNNCTG	2 cut(s)	2726, 2944
PsuI	RGATCY	7 cut(s)	586, 895, 1834, 2536, 2866, 2911, 3170
PsyI	GACNNNGTC	1 cut(s)	2549
PvuII	CAGCTG	1 cut(s)	1898
RsaI	GTAC	7 cut(s)	251, 319, 663, 1070, 1564, 2561, 3326
RsaNI	GTAC	7 cut(s)	250, 318, 662, 1069, 1563, 2560, 3325
RseI	CAYNNNNRTG	3 cut(s)	544, 732, 3599
SacI	GAGCTC	1 cut(s)	141
SacII	CCGCGG	1 cut(s)	196
SapI	GCTCTTC	1 cut(s)	2295
SaqAI	TTAA	3 cut(s)	795, 1043, 2984
Sau96I	GGNCC	7 cut(s)	715, 2059, 2161, 2271, 3037, 3221, 3222
ScaI	AGTACT	1 cut(s)	1564
SchI	GAGTC	8 cut(s)	74, 84, 1218, 1385, 1682, 2516, 2894, 2973
SduI	GDGCHC	3 cut(s)	141, 3225, 3740
SfcI	CTRYAG	9 cut(s)	509, 747, 1006, 1132, 1267, 2532, 2718, 3159, 3244
SfoI	GGCGCC	1 cut(s)	2426
Sfr274I	CTCGAG	1 cut(s)	206
Sfr303I	CCGCGG	1 cut(s)	196
SgrBI	CCGCGG	1 cut(s)	196
SinI	GGWCC	3 cut(s)	2059, 2161, 3037
SlaI	CTCGAG	1 cut(s)	206
SmiMI	CAYNNNNRTG	3 cut(s)	544, 732, 3599
SmlI	CTYRAG	4 cut(s)	206, 233, 767, 1717
SmoI	CTYRAG	4 cut(s)	206, 233, 767, 1717
SnaBI	TACGTA	1 cut(s)	2559
SphI	GCATGC	1 cut(s)	2408
SseBI	AGGCCT	1 cut(s)	3542
SsiI	CCGC	9 cut(s)	6, 151, 168, 193, 195, 1213, 3146, 3576, 3730
SspDI	GGCGCC	1 cut(s)	2424
SspI	AATATT	2 cut(s)	1518, 2352
SspMI	CTAG	7 cut(s)	284, 290, 581, 899, 950, 2069, 2105
SstI	GAGCTC	1 cut(s)	141
StuI	AGGCCT	1 cut(s)	3542
StyI	CCWWGG	6 cut(s)	171, 596, 1888, 2010, 2541, 2907
TaiI	ACGT	3 cut(s)	159, 2550, 2561
TaqI	TCGA	4 cut(s)	207, 724, 2610, 2951
TatI	WGTACW	2 cut(s)	317, 1562
TauI	GCSGC	6 cut(s)	9, 170, 195, 198, 3149, 3579
Tru1I	TTAA	3 cut(s)	795, 1043, 2984
Tru9I	TTAA	3 cut(s)	795, 1043, 2984
TscAI	CASTG	6 cut(s)	260, 736, 1621, 2061, 2668, 3253
TseFI	GTSAC	6 cut(s)	14, 157, 1339, 2431, 2897, 3582
TseI	GCWGC	8 cut(s)	70, 511, 577, 1395, 1405, 1510, 1916, 3129
Tsp45I	GTSAC	6 cut(s)	14, 157, 1339, 2431, 2897, 3582
TspGWI	ACGGA	2 cut(s)	1448, 2843
TspRI	CASTG	6 cut(s)	260, 736, 1621, 2061, 2668, 3253
Tth111I	GACNNNGTC	1 cut(s)	2549
Van91I	CCANNNNNTGG	1 cut(s)	472
VpaK11BI	GGWCC	3 cut(s)	2059, 2161, 3037
XbaI	TCTAGA	3 cut(s)	898, 949, 2104
XceI	RCATGY	7 cut(s)	1559, 2408, 3231, 3400, 3426, 3534, 3598
XcmI	CCANNNNNNNNNTGG	1 cut(s)	839
XhoI	CTCGAG	1 cut(s)	206
XmiI	GTMKAC	2 cut(s)	565, 1740
XmnI	GAANNNNTTC	2 cut(s)	1101, 3008
XspI	CTAG	7 cut(s)	284, 290, 581, 899, 950, 2069, 2105
ZrmI	AGTACT	1 cut(s)	1564
Zsp2I	ATGCAT	1 cut(s)	3625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.