Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008770

Physical Location & Seq

Genomic Coordinates Forward (+)

2256369 .. 2265474

Gene Structure 9106 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG032800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3771 bp

ATGGGCGGCGACCGTCACGACACCACCCGGCCGGACTGTTCTTCGTCTTCTTCTTCTTCTTCCTCCGAGTCGCAGCGAGTCCGGCTCTCTCAGACGCCGATTCTGTTGCTGGTTTGTTTCCATAAGGCGATGCGAGCCGAGCTCGCCGATCTCCGCCACGTCACCGAGGCGGCCTTGGACGGTGGATTCAGAGGCCGCGGCTTTGTTCTCGACGTTCTGCGACGGTTTGAGTTCCTCAAGCTCGCGTATAAGTACCACTGCTCTGCTGAGGATGAGGTTATTTTTCGAGCGCTAGATGGACGAACAAAAAACATAGCTTGTACATATTCGTTGGAGCATAGGAGTATAGATGGTCTTTTTGAATCTATTTTTAGTCGTTTGGATGTATTGTTAGAGGAAAGTAAAGATATTTCAAAGGAATTTCAGGAACTTGTGTTCTGCATCGGGACGCTCCAGGCATTCATTTGCCAGCATATGGTGAAAGAAGAAGAACAGGTTTTTCCTTTGCTCCTGCAGCAATTCTCTGTGATGGAGCAGGCTTCACTTGTGTGGCAGTTCATGTGTAGTATACCTTTAGTGCTGCTAGAGGATCTTCTACCATGGATGATCTCCTCTCTTCAAACTGATGAAAAAGAGGAAGTCATACATTGCATAAAAGAAATTGTACCTGATGAAAAATATCTCCAAGAGGTAGTAAGCTCGTGGCTTGCTAACAAGGGCCAGGCTCGACACACTGGTGATGATGAATCTGCAGATATGAAAAAGTTACTCAAGTCTCATTCCCCTAAGAGGTTCTTTAAAGAAAATTGGAGTTGCATGAAGAAAGACAGCATCCAAACTGATACTGGATACAGTCCTGTTGATGGGCTTCATCTTTGGCATGGTGCCATAAGGAAAGATCTAGAAAAAATTATGGGAGAGCTTTATCAATTGAGAAGCTCAGCCAATTTTCTAGATATTGATTCAATAGTTGTCCAGCTAAAGTTTCTTGCTGATGTCCTTACTTTCTACAGCAATGCGTTGGAGAAGTTAGTTCACCCTGTGTTAAGTGAACTTGTCAATGGCTGTCCGTACCCTTCTATTGAGAAATTTCCCAATGAAAGGCTTCTGGAAAGTTTGCAGAATTTACTATACCATAGCCTTGAAAATGGAACACCTTTGGGCAAATTTGTTGAAAAGCTTTGCCGGGAATTTGAGTGTCTTGTGGTGTTAGTCCGCAAACATTTTGCTGTCCACGAAACAGAGGTATTTCCCATTATAAGGAAGAACTGTAGCCATGAAATGCAACAGCAACTTGTGTATGTCAGCCTTCATATTATGCCACTTGGGTTGCTGAAGTGTGTGACTACTTGGTTTTCAGCTTGCTTATCTGAGGATGAGTCCAGGTCAATTCTTAGCAGCATGAAGCAGCGAGATTTCGTAGTCAATGAATCTTTTGTATCCCTGTTACATGAGTGGTTCCGTATTGGCCATTCAGGTAAAACCTCAATTGAAAATTTCCGAGAGGACTTGCAGCAAATATTCAAGAGCAGATGCACTTTCTTATGCAACCAATTACATGCCAGTGCGTGTTCATCTGTAAGCTCCAATATGCAACATCAAGGGAAATCAAACACTGGGGTAATGGAACTAATTTCTTCAAACAAGGGAAAGAACTCTATGCCATACTCTTCATCTTTTGCCCCCGACTCTTCTAAGTATTCTGAGATGACAAACTCAAGAGGAATCAATCTCCAAGTATACTTCTCTGGAATGAAAACATCTTATCATATTTCTGAAAGTCTTAGTGGAGAAAATTTGAGTGGTTACGGTCTCCATGAACCAAAACCAATAGATCTCATATTTTTCTTCCACAAGGCTCTCAGGAAGGATTTGGATTACCTTGTCCTTGGTTCAGCTGAGTTGGCTGAAAATGCAGCTTCCCTTACAAATTTTTGCCGGCGCTTTAGTCTCATACAGTTCTTACATCAAATACATAGTGAAGCAGAGGACGAGGTTGCCTTTCCAGCCTTGGAGGCAAAGGGAAAATGTCAAAACATTAGCCAGTCTTACACACTGGACCACAAACTAGAGGTTGAACTCTTCCAAAAAATATCCTTCATTCTAGATGAGATGTCTAAATTGCATTTTTCAGTTTCTATGGTTGATTCAAACACAATGGACCAGATGTCGCCAAAGCACTATCAGTTGTGCATGAGGCTTCATGGTATTTGCAAATCTATGAGCAAATTACTGACTGACCATATTCATCGTGAAGAAGTTGAACTTTGGCCCTTGTTTAGAGAATGCTTCTCCATTGAAGAGCAAGAAAGGATTGTGGGGTGCATACTTGGTAGAACAGAAGCGAAAATATTACAAGATATGATACCCTGGCTGATGGAATCTTTGACACCAGAAGAACAGCATGCCATGATATCTATATGGCGCCAGGTCACAAGAAACACAATGTTTGATGAGTGGTTGAAAGAATGGTGGGAGGGGTATGATGCAGGCAAGGTGGTGCAGGAGTCAAGTCTTCCTCCTTCAAAGACTGTAGATCCCTTGGACGTTGTCTCTACGTACTTGTGTGGACTGGATGAACAAGAAAGAAGTATCTTCAACAGAAACATCGACTTTCCCGAAAAAGATTCCCCTGATACTAATACTAAGCCATTACAAATCAGTGAGGTGAATCATAAGCTGAGGGATGCTGATAATCACCAATGTAATTACAACTCTACAGAAGCTGGAAGTCTTGCAGAAGGTAAGAAGATGAAGTATGAAGACATTGAAAATGCCATAGATCAAATCAATGATCCAGGACAACTTTTTCAAGCAAGTCAGAAAACGGCTTATTGTGAGTGCCTGCTGACCCTAAGTCAAGAGGATCTGTTGACTGCAATAAGTAAAATCTCCCGTGACTCTTCCTTGGATCCTCAGAAGAAACCATATATGATGCAGAGCCTGCTATCGAGCCATTGGAGAGTCAGACAACACTCTCAATTAACTGTTGCAAGTAATGGGAAAGAATTCCCTGGTCAGCATCCATCCTATCAGGACCCTTTTGGGCTAAAATTTGGTTGTAAACACTATAAGAGGAACTGTAAGCTTGTTGCTCCATGTTGCAACCAGATCTACACTTGCATACGCTGCCATGATGAGATGGCCGATCACACTATAGATAGGAGATCTGTAACAAAGATGATGTGCATGAACTGCTTGAAAATTCAGCCAATCGGGCCCACATGCTCAACTGCATCCTGCAGTGATTTATCTATGGCAAGATATTTTTGCAAAATCTGCAAAATTTTTGATGATGAAAGGATGATCTACCATTGCCCATACTGTAACTTGTGCCGAGTTGGAAAGGGGTTGGGTATTGACTATTTCCATTGCATGACTTGTAATGCTTGCATGTCCTGTTCTCTCTTCAAGCATACATGCAGAGAGAAAAGCTTTATGGATAATTGCCCTATTTGCCATGAGGACATCTTCACGAGCAACTCTCCAGTAAAAGCCCTTCCATGTGGTCATTCAATGCACTCAACATGTTTTCAGGCCTACACCTTTACTAATTATACCTGCCCAATCTGCGGCAAGTCACTTGGGGACATGCAGATGTTATTTAGAATGTATGATGCATATTTGGCTGGAGAGAAGCTTCCAGATGAGTATTCTGGCCGAACTCAGGCCATACTATGCAATGACTGTGAGAAGAAAGGAACTGCTCCCTTTCATTGGCTTTACCACAAGTGCTCCTCTTGTGGTTCATACAATACCAGGCTTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010106 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019725 GO:0019787 GO:0019941 GO:0030003 GO:0030163 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0033554 GO:0036211 GO:0042592 GO:0042594 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051603 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0071496 GO:0071704 GO:0098771 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemerythrin zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

1256

Amino Acids

143.76

Weight (kDa)

6.03

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hemerythrin	PF01814	39 - 170	4.6e-09	Hemerythrin HHE cation binding domain
zf-CHY	PF05495	1021 - 1089	5.7e-18	CHY zinc finger
zf-RING_2	PF13639	1148 - 1191	3.7e-09	Ring finger domain
zinc_ribbon_6	PF14599	1197 - 1254	1.3e-22	Zinc-ribbon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18910 AT1G74770 AT1G74770
fragaria_vesca	FvH4_5g15780 FvH4_5g15780 FvH4_5g15780
malus_domestica	MD14G1191800.v1.1
prunus_persica	Prupe.1G314300_v2.0.a1 Prupe.5G184400_v2.0.a1 Prupe.5G184400_v2.0.a1
pyrus_communis	pycom14g15950
rosa_chinensis	RchiOBHm_Chr7g0180341
rosa_laevigata	RLG00000005275
rosa_multiflora	Rmu_sc0003526.1_g000012 Rmu_ssc0000099.1_g000006
rosa_roxburghii	Rroxscaffold_3G00244490 Rroxscaffold_3G00272970
rosa_rugosa	Rorug06G0432400
rosa_samantha	Rh7AG032800 Rh7BG032800 Rh7CG034700 Rh7DG033400
rosa_wichuraiana	Rw7G002740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1259
Acc36I	ACCTGC	1 cut(s)	3569
AccB1I	GGYRCC	2 cut(s)	884, 2424
AccB7I	CCANNNNNTGG	1 cut(s)	475
AccI	GTMKAC	2 cut(s)	568, 1740
AccII	CGCG	2 cut(s)	198, 245
AciI	CCGC	7 cut(s)	6, 154, 170, 196, 198, 1216, 3573
AclWI	GGATC	6 cut(s)	597, 2531, 2789, 2874, 2906, 2919
AcoI	YGGCCR	4 cut(s)	29, 1468, 3144, 3658
AcuI	CTGAAG	1 cut(s)	1355
AcyI	GRCGYC	2 cut(s)	95, 2425
AdeI	CACNNNGTG	1 cut(s)	1042
AfaI	GTAC	5 cut(s)	254, 322, 666, 1073, 2561
AfeI	AGCGCT	1 cut(s)	291
AfiI	CCNNNNNNNGG	8 cut(s)	475, 789, 863, 1101, 1260, 3572, 3667, 3717
AflIII	ACRYGT	1 cut(s)	3527
AhdI	GACNNNNNGTC	2 cut(s)	2167, 2856
AjiI	CACGTC	1 cut(s)	160
AjnI	CCWGG	8 cut(s)	453, 720, 1382, 2369, 2427, 2797, 3013, 3758
AleI	CACNNNNGTG	2 cut(s)	547, 735
AloI	GAACNNNNNNTCC	2 cut(s)	419, 451
Alw21I	GWGCWC	2 cut(s)	144, 3737
Alw26I	GTCTC	4 cut(s)	780, 1817, 1955, 2557
AlwI	GGATC	6 cut(s)	597, 2531, 2789, 2874, 2906, 2919
AlwNI	CAGNNNCTG	2 cut(s)	2726, 2944
Aor51HI	AGCGCT	1 cut(s)	291
ApaI	GGGCCC	1 cut(s)	3222
ApeKI	GCWGC	8 cut(s)	73, 514, 580, 1398, 1408, 1513, 1916, 3129
Asp700I	GAANNNNTTC	2 cut(s)	1104, 3008
AspLEI	GCGC	3 cut(s)	292, 1944, 2427
AspS9I	GGNCC	7 cut(s)	718, 2059, 2161, 2271, 3037, 3218, 3219
AsuC2I	CCSGG	2 cut(s)	28, 1187
AsuHPI	GGTGA	6 cut(s)	154, 490, 749, 1028, 2680, 2690
AvaII	GGWCC	3 cut(s)	2059, 2161, 3037
BaeGI	GKGCMC	1 cut(s)	3222
BalI	TGGCCA	1 cut(s)	1470
BamHI	GGATCC	1 cut(s)	2911
BanI	GGYRCC	2 cut(s)	884, 2424
BanII	GRGCYC	2 cut(s)	144, 3222
BarI	GAAGNNNNNNTAC	2 cut(s)	3483, 3515
BauI	CACGAG	2 cut(s)	700, 3475
BbsI	GAAGAC	3 cut(s)	39, 2507, 2769
Bbv12I	GWGCWC	2 cut(s)	144, 3737
BbvCI	CCTCAGC	2 cut(s)	267, 2681
BbvI	GCAGC	8 cut(s)	85, 526, 567, 1410, 1420, 1525, 1928, 3116
BccI	CCATC	7 cut(s)	290, 344, 523, 857, 2371, 3034, 3136
BceAI	ACGGC	1 cut(s)	2844
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BciT130I	CCWGG	8 cut(s)	455, 722, 1384, 2371, 2429, 2799, 3015, 3760
BciVI	GTATCC	2 cut(s)	842, 1450
BcnI	CCSGG	2 cut(s)	28, 1187
BcoDI	GTCTC	4 cut(s)	780, 1817, 1955, 2557
BfaI	CTAG	6 cut(s)	293, 584, 902, 953, 2069, 2105
BfmI	CTRYAG	8 cut(s)	512, 750, 1009, 1270, 2532, 2718, 3156, 3241
BfoI	RGCGCY	3 cut(s)	293, 1945, 2428
BfuAI	ACCTGC	1 cut(s)	3569
BfuI	GTATCC	2 cut(s)	842, 1450
BglI	GCCNNNNNGGC	2 cut(s)	2015, 3217
BglII	AGATCT	4 cut(s)	898, 1834, 3111, 3167
BlpI	GCTNAGC	1 cut(s)	940
Bme18I	GGWCC	3 cut(s)	2059, 2161, 3037
BmeRI	GACNNNNNGTC	2 cut(s)	2167, 2856
BmgBI	CACGTC	1 cut(s)	160
BmgT120I	GGNCC	7 cut(s)	718, 2059, 2161, 2271, 3037, 3218, 3219
BmiI	GGNNCC	6 cut(s)	886, 1460, 2426, 2913, 3039, 3220
BmrI	ACTGGG	1 cut(s)	1626
BmuI	ACTGGG	1 cut(s)	1626
BpiI	GAAGAC	3 cut(s)	39, 2507, 2769
BplI	GAGNNNNNCTC	6 cut(s)	69, 101, 126, 158, 3469, 3501
BpmI	CTGGAG	3 cut(s)	437, 3471, 3651
Bpu10I	CCTNAGC	2 cut(s)	267, 2681
Bpu1102I	GCTNAGC	1 cut(s)	940
BpuEI	CTTGAG	3 cut(s)	221, 755, 1702
BpuMI	CCSGG	2 cut(s)	28, 1187
BsaAI	YACGTR	1 cut(s)	2559
BsaHI	GRCGYC	2 cut(s)	95, 2425
BsaI	GGTCTC	1 cut(s)	1817
BsaXI	ACNNNNNCTCC	2 cut(s)	3719, 3749
Bsc4I	CCNNNNNNNGG	8 cut(s)	475, 789, 863, 1101, 1260, 3572, 3667, 3717
Bse118I	RCCGGY	1 cut(s)	1938
Bse1I	ACTGG	8 cut(s)	739, 850, 1563, 1621, 2044, 2061, 2577, 3488
Bse3DI	GCAATG	5 cut(s)	646, 1021, 3313, 3370, 3688
BseBI	CCWGG	8 cut(s)	455, 722, 1384, 2371, 2429, 2799, 3015, 3760
BseLI	CCNNNNNNNGG	8 cut(s)	475, 789, 863, 1101, 1260, 3572, 3667, 3717
BseMI	GCAATG	5 cut(s)	646, 1021, 3313, 3370, 3688
BseNI	ACTGG	8 cut(s)	739, 850, 1563, 1621, 2044, 2061, 2577, 3488
BseRI	GAGGAG	2 cut(s)	601, 3727
BseSI	GKGCMC	1 cut(s)	3222
BseX3I	CGGCCG	1 cut(s)	29
BseXI	GCAGC	8 cut(s)	85, 526, 567, 1410, 1420, 1525, 1928, 3116
BsgI	GTGCAG	1 cut(s)	2522
Bsh1236I	CGCG	2 cut(s)	198, 245
Bsh1285I	CGRYCG	2 cut(s)	13, 32
BshNI	GGYRCC	2 cut(s)	884, 2424
BsiEI	CGRYCG	2 cut(s)	13, 32
BsiHKAI	GWGCWC	2 cut(s)	144, 3737
BsiSI	CCGG	5 cut(s)	28, 32, 82, 1186, 1939
BslFI	GGGAC	2 cut(s)	460, 3602
BslI	CCNNNNNNNGG	8 cut(s)	475, 789, 863, 1101, 1260, 3572, 3667, 3717
BsmAI	GTCTC	4 cut(s)	780, 1817, 1955, 2557
BsmFI	GGGAC	2 cut(s)	460, 3602
BsmI	GAATGC	2 cut(s)	458, 2291
Bso31I	GGTCTC	1 cut(s)	1817
Bsp120I	GGGCCC	1 cut(s)	3218
Bsp1286I	GDGCHC	3 cut(s)	144, 3222, 3737
Bsp1407I	TGTACA	1 cut(s)	320
Bsp1720I	GCTNAGC	1 cut(s)	940
Bsp19I	CCATGG	1 cut(s)	599
BspACI	CCGC	7 cut(s)	6, 154, 170, 196, 198, 1216, 3573
BspFNI	CGCG	2 cut(s)	198, 245
BspLI	GGNNCC	6 cut(s)	886, 1460, 2426, 2913, 3039, 3220
BspMAI	CTGCAG	3 cut(s)	516, 754, 3245
BspMI	ACCTGC	1 cut(s)	3569
BspPI	GGATC	6 cut(s)	597, 2531, 2789, 2874, 2906, 2919
BspQI	GCTCTTC	1 cut(s)	2295
BspT107I	GGYRCC	2 cut(s)	884, 2424
BspTNI	GGTCTC	1 cut(s)	1817
BsrDI	GCAATG	5 cut(s)	646, 1021, 3313, 3370, 3688
BsrFI	RCCGGY	1 cut(s)	1938
BsrGI	TGTACA	1 cut(s)	320
BsrI	ACTGG	8 cut(s)	739, 850, 1563, 1621, 2044, 2061, 2577, 3488
BssAI	RCCGGY	1 cut(s)	1938
BssNAI	GTATAC	2 cut(s)	569, 1741
BssNI	GRCGYC	2 cut(s)	95, 2425
BssSI	CACGAG	2 cut(s)	700, 3475
BssT1I	CCWWGG	6 cut(s)	174, 599, 1888, 2010, 2541, 2907
Bst1107I	GTATAC	2 cut(s)	569, 1741
Bst2BI	CACGAG	2 cut(s)	700, 3475
Bst2UI	CCWGG	8 cut(s)	455, 722, 1384, 2371, 2429, 2799, 3015, 3760
Bst6I	CTCTTC	7 cut(s)	621, 1675, 1696, 2087, 2295, 2908, 3413
BstACI	GRCGYC	2 cut(s)	95, 2425
BstAPI	GCANNNNNTGC	4 cut(s)	2944, 3129, 3195, 3279
BstAUI	TGTACA	1 cut(s)	320
BstBAI	YACGTR	1 cut(s)	2559
BstDSI	CCRYGG	2 cut(s)	196, 599
BstFNI	CGCG	2 cut(s)	198, 245
BstH2I	RGCGCY	3 cut(s)	293, 1945, 2428
BstHHI	GCGC	3 cut(s)	292, 1944, 2427
BstMAI	GTCTC	4 cut(s)	780, 1817, 1955, 2557
BstMCI	CGRYCG	2 cut(s)	13, 32
BstNI	CCWGG	8 cut(s)	455, 722, 1384, 2371, 2429, 2799, 3015, 3760
BstNSI	RCATGY	7 cut(s)	1562, 2408, 3228, 3397, 3423, 3531, 3595
BstSFI	CTRYAG	8 cut(s)	512, 750, 1009, 1270, 2532, 2718, 3156, 3241
BstSLI	GKGCMC	1 cut(s)	3222
BstSNI	TACGTA	1 cut(s)	2559
BstUI	CGCG	2 cut(s)	198, 245
BstV1I	GCAGC	8 cut(s)	85, 526, 567, 1410, 1420, 1525, 1928, 3116
BstV2I	GAAGAC	3 cut(s)	39, 2507, 2769
BstX2I	RGATCY	8 cut(s)	589, 898, 1834, 2536, 2866, 2911, 3111, 3167
BstYI	RGATCY	8 cut(s)	589, 898, 1834, 2536, 2866, 2911, 3111, 3167
BstZ17I	GTATAC	2 cut(s)	569, 1741
BstZI	CGGCCG	1 cut(s)	29
BsuI	GTATCC	2 cut(s)	842, 1450
BtgI	CCRYGG	2 cut(s)	196, 599
BtgZI	GCGATG	1 cut(s)	143
BtrI	CACGTC	1 cut(s)	160
BtsI	GCAGTG	2 cut(s)	256, 3250
BtsIMutI	CAGTG	7 cut(s)	256, 732, 1570, 1614, 2054, 2668, 3250
BveI	ACCTGC	1 cut(s)	3569
CaiI	CAGNNNCTG	2 cut(s)	2726, 2944
CfoI	GCGC	3 cut(s)	292, 1944, 2427
Cfr10I	RCCGGY	1 cut(s)	1938
Cfr13I	GGNCC	7 cut(s)	718, 2059, 2161, 2271, 3037, 3218, 3219
Cfr42I	CCGCGG	1 cut(s)	199
CseI	GACGC	2 cut(s)	103, 457
Csp6I	GTAC	5 cut(s)	253, 321, 665, 1072, 2560
CspCI	CAANNNNNGTGG	2 cut(s)	1311, 1346
CviQI	GTAC	5 cut(s)	253, 321, 665, 1072, 2560
DinI	GGCGCC	1 cut(s)	2426
DraI	TTTAAA	1 cut(s)	799
DraIII	CACNNNGTG	1 cut(s)	1042
DriI	GACNNNNNGTC	2 cut(s)	2167, 2856
EaeI	YGGCCR	4 cut(s)	29, 1468, 3144, 3658
EagI	CGGCCG	1 cut(s)	29
Eam1104I	CTCTTC	7 cut(s)	621, 1675, 1696, 2087, 2295, 2908, 3413
Eam1105I	GACNNNNNGTC	2 cut(s)	2167, 2856
EarI	CTCTTC	7 cut(s)	621, 1675, 1696, 2087, 2295, 2908, 3413
EciI	GGCGGA	1 cut(s)	143
Ecl136II	GAGCTC	1 cut(s)	142
EclXI	CGGCCG	1 cut(s)	29
Eco105I	TACGTA	1 cut(s)	2559
Eco130I	CCWWGG	6 cut(s)	174, 599, 1888, 2010, 2541, 2907
Eco147I	AGGCCT	1 cut(s)	3539
Eco24I	GRGCYC	2 cut(s)	144, 3222
Eco31I	GGTCTC	1 cut(s)	1817
Eco32I	GATATC	1 cut(s)	2415
Eco47I	GGWCC	3 cut(s)	2059, 2161, 3037
Eco47III	AGCGCT	1 cut(s)	291
Eco52I	CGGCCG	1 cut(s)	29
Eco53kI	GAGCTC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	1355
EcoICRI	GAGCTC	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	3037
EcoRI	GAATTC	1 cut(s)	3008
EcoRII	CCWGG	8 cut(s)	453, 720, 1382, 2369, 2427, 2797, 3013, 3758
EcoRV	GATATC	1 cut(s)	2415
EcoT14I	CCWWGG	6 cut(s)	174, 599, 1888, 2010, 2541, 2907
EcoT22I	ATGCAT	1 cut(s)	3622
EcoT38I	GRGCYC	2 cut(s)	144, 3222
EgeI	GGCGCC	1 cut(s)	2426
EheI	GGCGCC	1 cut(s)	2426
ErhI	CCWWGG	6 cut(s)	174, 599, 1888, 2010, 2541, 2907
FalI	AAGNNNNNCTT	4 cut(s)	779, 811, 2250, 2282
FaqI	GGGAC	2 cut(s)	460, 3602
FauNDI	CATATG	1 cut(s)	474
FblI	GTMKAC	2 cut(s)	568, 1740
FriOI	GRGCYC	2 cut(s)	144, 3222
FspBI	CTAG	6 cut(s)	293, 584, 902, 953, 2069, 2105
GlaI	GCGC	3 cut(s)	291, 1943, 2426
GsuI	CTGGAG	3 cut(s)	437, 3471, 3651
HaeII	RGCGCY	3 cut(s)	293, 1945, 2428
HapII	CCGG	5 cut(s)	28, 32, 82, 1186, 1939
HgaI	GACGC	2 cut(s)	103, 457
HhaI	GCGC	3 cut(s)	292, 1944, 2427
Hin1I	GRCGYC	2 cut(s)	95, 2425
Hin6I	GCGC	3 cut(s)	290, 1942, 2425
HinP1I	GCGC	3 cut(s)	290, 1942, 2425
HincII	GTYRAC	1 cut(s)	2874
HindII	GTYRAC	1 cut(s)	2874
HindIII	AAGCTT	4 cut(s)	1178, 3086, 3433, 3638
HpaII	CCGG	5 cut(s)	28, 32, 82, 1186, 1939
HphI	GGTGA	6 cut(s)	154, 490, 749, 1028, 2680, 2690
Hpy166II	GTNNAC	8 cut(s)	569, 1036, 1052, 1234, 1741, 2570, 2874, 3065
Hpy8I	GTNNAC	8 cut(s)	569, 1036, 1052, 1234, 1741, 2570, 2874, 3065
Hpy99I	CGWCG	2 cut(s)	215, 225
HpyAV	CCTTC	7 cut(s)	1086, 1319, 1861, 2107, 2532, 2735, 3509
HpyCH4IV	ACGT	4 cut(s)	159, 213, 2547, 2558
HpySE526I	ACGT	4 cut(s)	159, 213, 2547, 2558
Hsp92I	GRCGYC	2 cut(s)	95, 2425
HspAI	GCGC	3 cut(s)	290, 1942, 2425
KasI	GGCGCC	1 cut(s)	2424
KroI	GCCGGC	1 cut(s)	1938
KroNI	GCCGGC	1 cut(s)	1940
KspI	CCGCGG	1 cut(s)	199
LguI	GCTCTTC	1 cut(s)	2295
LmnI	GCTCC	8 cut(s)	334, 456, 513, 532, 1589, 3100, 3712, 3740
Lsp1109I	GCAGC	8 cut(s)	85, 526, 567, 1410, 1420, 1525, 1928, 3116
MaeI	CTAG	6 cut(s)	293, 584, 902, 953, 2069, 2105
MaeII	ACGT	4 cut(s)	159, 213, 2547, 2558
MfeI	CAATTG	2 cut(s)	929, 1488
MflI	RGATCY	8 cut(s)	589, 898, 1834, 2536, 2866, 2911, 3111, 3167
MhlI	GDGCHC	3 cut(s)	144, 3222, 3737
MlsI	TGGCCA	1 cut(s)	1470
MluNI	TGGCCA	1 cut(s)	1470
Mly113I	GGCGCC	1 cut(s)	2425
MlyI	GAGTC	7 cut(s)	77, 87, 1388, 1682, 2516, 2894, 2973
MmeI	TCCRAC	3 cut(s)	312, 1002, 3322
Mox20I	TGGCCA	1 cut(s)	1470
Mph1103I	ATGCAT	1 cut(s)	3622
MroNI	GCCGGC	1 cut(s)	1938
MroXI	GAANNNNTTC	2 cut(s)	1104, 3008
MscI	TGGCCA	1 cut(s)	1470
MseI	TTAA	3 cut(s)	798, 1046, 2984
MslI	CAYNNNNRTG	4 cut(s)	547, 735, 1563, 3596
Msp20I	TGGCCA	1 cut(s)	1470
MspA1I	CMGCKG	2 cut(s)	198, 1898
MspI	CCGG	5 cut(s)	28, 32, 82, 1186, 1939
MunI	CAATTG	2 cut(s)	929, 1488
Mva1269I	GAATGC	2 cut(s)	458, 2291
MvaI	CCWGG	8 cut(s)	455, 722, 1384, 2371, 2429, 2799, 3015, 3760
MvnI	CGCG	2 cut(s)	198, 245
NaeI	GCCGGC	1 cut(s)	1940
NarI	GGCGCC	1 cut(s)	2425
NciI	CCSGG	2 cut(s)	28, 1187
NcoI	CCATGG	1 cut(s)	599
NdeI	CATATG	1 cut(s)	474
NgoMIV	GCCGGC	1 cut(s)	1938
NlaIV	GGNNCC	6 cut(s)	886, 1460, 2426, 2913, 3039, 3220
NmeAIII	GCCGAG	2 cut(s)	163, 3362
NmuCI	GTSAC	6 cut(s)	14, 160, 1342, 2431, 2897, 3579
NsiI	ATGCAT	1 cut(s)	3622
NspI	RCATGY	7 cut(s)	1562, 2408, 3228, 3397, 3423, 3531, 3595
OliI	CACNNNNGTG	2 cut(s)	547, 735
PaeI	GCATGC	1 cut(s)	2408
PceI	AGGCCT	1 cut(s)	3539
PciI	ACATGT	1 cut(s)	3527
PciSI	GCTCTTC	1 cut(s)	2295
PcsI	WCGNNNNNNNCGW	1 cut(s)	2616
PctI	GAATGC	2 cut(s)	458, 2291
PdiI	GCCGGC	1 cut(s)	1940
PdmI	GAANNNNTTC	2 cut(s)	1104, 3008
PflFI	GACNNNGTC	1 cut(s)	2549
PflMI	CCANNNNNTGG	1 cut(s)	475
PfoI	TCCNGGA	1 cut(s)	2797
PleI	GAGTC	7 cut(s)	76, 86, 1387, 1682, 2515, 2894, 2972
PluTI	GGCGCC	1 cut(s)	2428
PpsI	GAGTC	7 cut(s)	76, 86, 1387, 1682, 2515, 2894, 2972
Ppu21I	YACGTR	1 cut(s)	2559
PpuMI	RGGWCCY	1 cut(s)	3037
PscI	ACATGT	1 cut(s)	3527
PsiI	TTATAA	1 cut(s)	1259
Psp124BI	GAGCTC	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	3037
Psp6I	CCWGG	8 cut(s)	453, 720, 1382, 2369, 2427, 2797, 3013, 3758
PspGI	CCWGG	8 cut(s)	453, 720, 1382, 2369, 2427, 2797, 3013, 3758
PspN4I	GGNNCC	6 cut(s)	886, 1460, 2426, 2913, 3039, 3220
PspOMI	GGGCCC	1 cut(s)	3218
PspPI	GGNCC	7 cut(s)	718, 2059, 2161, 2271, 3037, 3218, 3219
PspPPI	RGGWCCY	1 cut(s)	3037
PstI	CTGCAG	3 cut(s)	516, 754, 3245
PstNI	CAGNNNCTG	2 cut(s)	2726, 2944
PsuI	RGATCY	8 cut(s)	589, 898, 1834, 2536, 2866, 2911, 3111, 3167
PsyI	GACNNNGTC	1 cut(s)	2549
PvuII	CAGCTG	1 cut(s)	1898
RsaI	GTAC	5 cut(s)	254, 322, 666, 1073, 2561
RsaNI	GTAC	5 cut(s)	253, 321, 665, 1072, 2560
RseI	CAYNNNNRTG	4 cut(s)	547, 735, 1563, 3596
SacI	GAGCTC	1 cut(s)	144
SacII	CCGCGG	1 cut(s)	199
SapI	GCTCTTC	1 cut(s)	2295
SaqAI	TTAA	3 cut(s)	798, 1046, 2984
Sau96I	GGNCC	7 cut(s)	718, 2059, 2161, 2271, 3037, 3218, 3219
SchI	GAGTC	7 cut(s)	77, 87, 1388, 1682, 2516, 2894, 2973
SduI	GDGCHC	3 cut(s)	144, 3222, 3737
SfcI	CTRYAG	8 cut(s)	512, 750, 1009, 1270, 2532, 2718, 3156, 3241
SfoI	GGCGCC	1 cut(s)	2426
Sfr303I	CCGCGG	1 cut(s)	199
SgrBI	CCGCGG	1 cut(s)	199
SinI	GGWCC	3 cut(s)	2059, 2161, 3037
SmiMI	CAYNNNNRTG	4 cut(s)	547, 735, 1563, 3596
SmlI	CTYRAG	3 cut(s)	236, 770, 1717
SmoI	CTYRAG	3 cut(s)	236, 770, 1717
SnaBI	TACGTA	1 cut(s)	2559
SphI	GCATGC	1 cut(s)	2408
SseBI	AGGCCT	1 cut(s)	3539
SsiI	CCGC	7 cut(s)	6, 154, 170, 196, 198, 1216, 3573
SspDI	GGCGCC	1 cut(s)	2424
SspI	AATATT	2 cut(s)	1521, 2352
SspMI	CTAG	6 cut(s)	293, 584, 902, 953, 2069, 2105
SstI	GAGCTC	1 cut(s)	144
StuI	AGGCCT	1 cut(s)	3539
StyI	CCWWGG	6 cut(s)	174, 599, 1888, 2010, 2541, 2907
TaiI	ACGT	4 cut(s)	162, 216, 2550, 2561
TaqI	TCGA	5 cut(s)	210, 286, 727, 2610, 2951
TatI	WGTACW	1 cut(s)	320
TauI	GCSGC	5 cut(s)	9, 173, 198, 201, 3576
Tru1I	TTAA	3 cut(s)	798, 1046, 2984
Tru9I	TTAA	3 cut(s)	798, 1046, 2984
TscAI	CASTG	7 cut(s)	263, 739, 1570, 1621, 2061, 2668, 3250
TseFI	GTSAC	6 cut(s)	14, 160, 1342, 2431, 2897, 3579
TseI	GCWGC	8 cut(s)	73, 514, 580, 1398, 1408, 1513, 1916, 3129
Tsp45I	GTSAC	6 cut(s)	14, 160, 1342, 2431, 2897, 3579
TspGWI	ACGGA	2 cut(s)	1059, 1451
TspRI	CASTG	7 cut(s)	263, 739, 1570, 1621, 2061, 2668, 3250
Tth111I	GACNNNGTC	1 cut(s)	2549
Van91I	CCANNNNNTGG	1 cut(s)	475
VpaK11BI	GGWCC	3 cut(s)	2059, 2161, 3037
XbaI	TCTAGA	3 cut(s)	901, 952, 2104
XceI	RCATGY	7 cut(s)	1562, 2408, 3228, 3397, 3423, 3531, 3595
XcmI	CCANNNNNNNNNTGG	1 cut(s)	842
XmiI	GTMKAC	2 cut(s)	568, 1740
XmnI	GAANNNNTTC	2 cut(s)	1104, 3008
XspI	CTAG	6 cut(s)	293, 584, 902, 953, 2069, 2105
Zsp2I	ATGCAT	1 cut(s)	3622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.