Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008770

Physical Location & Seq

Genomic Coordinates Forward (+)

56743109 .. 56744013

Gene Structure 905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0432400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGAAGTCCTTTATGGTGTTAATTGTCACTGCAATGTGCATAGCAGAAACTCTTGCTCTTGCTCCAAACATTGTAAAGGGGTCACAAGCACTTGGATTGATTTTTAGTATACTCAACAGAGAAACAGCCATACATTCTAATGATCCCACATCAAATGTGGTTGCTGATATCAGAGGAGACATAGAATTCAGAAATGTGCGGTTTTGGTACCCTGCACGGTCTGATATCACCATTTTCGACAACTTGAATTTGAAGGTGTCAGCAGGGAAGAGTCTTGCAGTTGTCGGTCCAAGTGGTTCAGGGAAGAGTACTCTGATTGCACTAGTAATGAGATTTTATGACCCTATTTTAGGAGCAGTTATGATTGATGGACATGATATCAAAGGCTTAAACTTGAAATCTTTGAGGAAGAAAATAGGACTAGTCCAGCAAGAGCCAGCATTGTTCTCAACAACAGTTTATGACAACATCAAATATGGGAATGAGGAAGCATCCGAAGTTGAGTTATCTGGTGGGCAGAAACAGCGGGTGGCTATTGCTAGAGCTATACTGAAAGACCCATCGATACTTCTTTTAGATGAAGCAACAAGTGCGTTGGACACAGAGGCCGAGAAGCTGGTTCAGGAGGCTCTAGATAAGCTAATGGAAGGCCGAACAATTTTGGTAGCACACAGGTTGTCAACTATACGTGATGCAAACAATTTTGCCCTGCTACAAAATGGTAGGGTGGTGGAAATGGGTAGCCATGAGCAGCTGATTGGAACCCCCGGAAGTCTGTATAAACAATTAGTTGGTCTACAGCAAGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010106 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019725 GO:0019787 GO:0019941 GO:0030003 GO:0030163 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0033554 GO:0036211 GO:0042592 GO:0042594 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051603 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0071496 GO:0071704 GO:0098771 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemerythrin zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

270

Amino Acids

29.42

Weight (kDa)

5.89

Isoelectric Point (pI)

32.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	80 - 162	3.4e-18	ABC transporter
ABC_tran	PF00005	167 - 197	1.4e-09	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18910 AT1G74770 AT1G74770
fragaria_vesca	FvH4_5g15780 FvH4_5g15780 FvH4_5g15780
malus_domestica	MD14G1191800.v1.1
prunus_persica	Prupe.1G314300_v2.0.a1 Prupe.5G184400_v2.0.a1 Prupe.5G184400_v2.0.a1
pyrus_communis	pycom14g15950
rosa_chinensis	RchiOBHm_Chr7g0180341
rosa_laevigata	RLG00000005275
rosa_multiflora	Rmu_sc0003526.1_g000012 Rmu_ssc0000099.1_g000006
rosa_roxburghii	Rroxscaffold_3G00244490 Rroxscaffold_3G00272970
rosa_rugosa	Rorug06G0432400
rosa_samantha	Rh7AG032800 Rh7BG032800 Rh7CG034700 Rh7DG033400
rosa_wichuraiana	Rw7G002740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	207
AccI	GTMKAC	2 cut(s)	109, 796
AciI	CCGC	2 cut(s)	199, 526
AclWI	GGATC	1 cut(s)	137
AcsI	RAATTY	2 cut(s)	185, 247
AfaI	GTAC	2 cut(s)	209, 310
AfiI	CCNNNNNNNGG	1 cut(s)	350
AgsI	TTSAA	3 cut(s)	247, 253, 397
AhlI	ACTAGT	2 cut(s)	322, 421
AluBI	AGCT	4 cut(s)	545, 616, 640, 754
AluI	AGCT	4 cut(s)	545, 616, 640, 754
Alw26I	GTCTC	1 cut(s)	171
AlwI	GGATC	1 cut(s)	137
AoxI	GGCC	2 cut(s)	606, 649
ApeKI	GCWGC	1 cut(s)	751
ApoI	RAATTY	2 cut(s)	185, 247
Asp718I	GGTACC	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	768
AsuHPI	GGTGA	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	763
BccI	CCATC	2 cut(s)	362, 568
BcnI	CCSGG	1 cut(s)	768
BcoDI	GTCTC	1 cut(s)	171
BcuI	ACTAGT	2 cut(s)	322, 421
BfaI	CTAG	4 cut(s)	323, 422, 540, 632
BfmI	CTRYAG	1 cut(s)	797
BisI	GCNGC	1 cut(s)	752
BlsI	GCNGC	1 cut(s)	753
BmcAI	AGTACT	1 cut(s)	310
Bme1390I	CCNGG	1 cut(s)	768
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	2 cut(s)	209, 763
BmrFI	CCNGG	1 cut(s)	768
BmsI	GCATC	2 cut(s)	500, 682
BpuMI	CCSGG	1 cut(s)	768
Bsa29I	ATCGAT	1 cut(s)	563
BsaAI	YACGTR	1 cut(s)	689
BsaJI	CCNNGG	1 cut(s)	766
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse3DI	GCAATG	1 cut(s)	39
BseCI	ATCGAT	1 cut(s)	563
BseDI	CCNNGG	1 cut(s)	766
BseGI	GGATG	1 cut(s)	491
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMI	GCAATG	1 cut(s)	39
BseRI	GAGGAG	1 cut(s)	189
BseXI	GCAGC	1 cut(s)	763
BsgI	GTGCAG	1 cut(s)	198
BshFI	GGCC	2 cut(s)	608, 651
BshNI	GGYRCC	1 cut(s)	207
BshVI	ATCGAT	1 cut(s)	563
BsiSI	CCGG	1 cut(s)	768
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmAI	GTCTC	1 cut(s)	171
BsnI	GGCC	2 cut(s)	608, 651
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	2 cut(s)	199, 526
BspANI	GGCC	2 cut(s)	608, 651
BspDI	ATCGAT	1 cut(s)	563
BspLI	GGNNCC	2 cut(s)	209, 763
BspPI	GGATC	1 cut(s)	137
BspT107I	GGYRCC	1 cut(s)	207
BsrDI	GCAATG	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	766
BssMI	GATC	1 cut(s)	142
BssNAI	GTATAC	1 cut(s)	110
Bst1107I	GTATAC	1 cut(s)	110
Bst4CI	ACNGT	2 cut(s)	219, 457
Bst6I	CTCTTC	2 cut(s)	263, 299
BstAPI	GCANNNNNTGC	1 cut(s)	590
BstBAI	YACGTR	1 cut(s)	689
BstC8I	GCNNGC	1 cut(s)	438
BstENI	CCTNNNNNAGG	1 cut(s)	348
BstF5I	GGATG	1 cut(s)	491
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	2 cut(s)	523, 590
BstSCI	CCNGG	1 cut(s)	766
BstSFI	CTRYAG	1 cut(s)	797
BstV1I	GCAGC	1 cut(s)	763
BstZ17I	GTATAC	1 cut(s)	110
Bsu15I	ATCGAT	1 cut(s)	563
BsuRI	GGCC	2 cut(s)	608, 651
BsuTUI	ATCGAT	1 cut(s)	563
BtsCI	GGATG	1 cut(s)	491
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	1 cut(s)	438
Cfr13I	GGNCC	1 cut(s)	287
ClaI	ATCGAT	1 cut(s)	563
Csp6I	GTAC	2 cut(s)	208, 309
CviAII	CATG	2 cut(s)	374, 746
CviQI	GTAC	2 cut(s)	208, 309
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
Eam1104I	CTCTTC	2 cut(s)	263, 299
EarI	CTCTTC	2 cut(s)	263, 299
Eco32I	GATATC	3 cut(s)	169, 226, 379
Eco47I	GGWCC	1 cut(s)	287
EcoNI	CCTNNNNNAGG	1 cut(s)	348
EcoRI	GAATTC	1 cut(s)	185
EcoRV	GATATC	3 cut(s)	169, 226, 379
FaeI	CATG	2 cut(s)	377, 749
FatI	CATG	2 cut(s)	373, 745
FauI	CCCGC	1 cut(s)	519
FblI	GTMKAC	2 cut(s)	109, 796
Fnu4HI	GCNGC	1 cut(s)	752
FokI	GGATG	1 cut(s)	478
Fsp4HI	GCNGC	1 cut(s)	752
FspBI	CTAG	4 cut(s)	323, 422, 540, 632
GluI	GCNGC	1 cut(s)	752
HaeIII	GGCC	2 cut(s)	608, 651
HapII	CCGG	1 cut(s)	768
Hin1II	CATG	2 cut(s)	377, 749
HincII	GTYRAC	1 cut(s)	681
HindII	GTYRAC	1 cut(s)	681
HinfI	GANTC	1 cut(s)	271
HpaII	CCGG	1 cut(s)	768
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	3 cut(s)	110, 681, 797
Hpy188I	TCNGA	5 cut(s)	173, 191, 223, 315, 496
Hpy188III	TCNNGA	2 cut(s)	623, 632
Hpy8I	GTNNAC	3 cut(s)	110, 681, 797
HpyAV	CCTTC	2 cut(s)	247, 641
HpyCH4III	ACNGT	2 cut(s)	219, 457
HpyCH4IV	ACGT	1 cut(s)	688
HpyCH4V	TGCA	6 cut(s)	32, 39, 215, 278, 320, 695
HpyF10VI	GCNNNNNNNGC	2 cut(s)	523, 590
HpySE526I	ACGT	1 cut(s)	688
Hsp92II	CATG	2 cut(s)	377, 749
KpnI	GGTACC	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	2 cut(s)	67, 353
Lsp1109I	GCAGC	1 cut(s)	763
LweI	GCATC	2 cut(s)	500, 682
MaeI	CTAG	4 cut(s)	323, 422, 540, 632
MaeII	ACGT	1 cut(s)	688
MaeIII	GTNAC	2 cut(s)	25, 81
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	3 cut(s)	280, 316, 421
MluCI	AATT	6 cut(s)	21, 185, 247, 657, 700, 785
MlyI	GAGTC	1 cut(s)	280
MmeI	TCCRAC	1 cut(s)	576
MnlI	CCTC	6 cut(s)	167, 399, 478, 598, 619, 799
MseI	TTAA	2 cut(s)	20, 389
MslI	CAYNNNNRTG	2 cut(s)	32, 138
MspA1I	CMGCKG	2 cut(s)	526, 754
MspI	CCGG	1 cut(s)	768
MspR9I	CCNGG	1 cut(s)	768
MwoI	GCNNNNNNNGC	2 cut(s)	523, 590
NciI	CCSGG	1 cut(s)	768
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	2 cut(s)	377, 749
NlaIV	GGNNCC	2 cut(s)	209, 763
NmeAIII	GCCGAG	1 cut(s)	634
NmuCI	GTSAC	2 cut(s)	25, 81
PkrI	GCNGC	1 cut(s)	753
PleI	GAGTC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	279
Ppu21I	YACGTR	1 cut(s)	689
PspN4I	GGNNCC	2 cut(s)	209, 763
PspPI	GGNCC	1 cut(s)	287
PvuII	CAGCTG	1 cut(s)	754
RsaI	GTAC	2 cut(s)	209, 310
RsaNI	GTAC	2 cut(s)	208, 309
RseI	CAYNNNNRTG	2 cut(s)	32, 138
SaqAI	TTAA	2 cut(s)	20, 389
SatI	GCNGC	1 cut(s)	752
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	1 cut(s)	287
ScaI	AGTACT	1 cut(s)	310
SchI	GAGTC	1 cut(s)	280
ScrFI	CCNGG	1 cut(s)	768
SetI	ASST	7 cut(s)	258, 547, 618, 642, 677, 691, 756
SfaNI	GCATC	2 cut(s)	500, 682
SfcI	CTRYAG	1 cut(s)	797
SinI	GGWCC	1 cut(s)	287
SmiMI	CAYNNNNRTG	2 cut(s)	32, 138
SpeI	ACTAGT	2 cut(s)	322, 421
Sse9I	AATT	6 cut(s)	21, 185, 247, 657, 700, 785
SsiI	CCGC	2 cut(s)	199, 526
SspMI	CTAG	4 cut(s)	323, 422, 540, 632
StyD4I	CCNGG	1 cut(s)	766
TaaI	ACNGT	2 cut(s)	219, 457
TaiI	ACGT	1 cut(s)	691
TaqI	TCGA	2 cut(s)	237, 563
TaqII	GACCGA	1 cut(s)	275
TasI	AATT	6 cut(s)	21, 185, 247, 657, 700, 785
TatI	WGTACW	1 cut(s)	308
Tru1I	TTAA	2 cut(s)	20, 389
Tru9I	TTAA	2 cut(s)	20, 389
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	2 cut(s)	25, 81
TseI	GCWGC	1 cut(s)	751
Tsp45I	GTSAC	2 cut(s)	25, 81
TspDTI	ATGAA	2 cut(s)	17, 594
TspRI	CASTG	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	287
XagI	CCTNNNNNAGG	1 cut(s)	348
XapI	RAATTY	2 cut(s)	185, 247
XbaI	TCTAGA	1 cut(s)	631
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
XmiI	GTMKAC	2 cut(s)	109, 796
XspI	CTAG	4 cut(s)	323, 422, 540, 632
ZrmI	AGTACT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.