Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008770

Physical Location & Seq

Genomic Coordinates Reverse (-)

64902394 .. 64909504

Gene Structure 7111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00272970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGGCGGCGACCGTCACGACACCACCCGGGCGGTCTGTTCCTCGTCTTCTTCTTCGTCGTCTTTGTCTTCCGAGTCGCGAGTCCGGCTCGCTCAGACGCCGATTCTGTTGCTGGTTTGCTTCCACAAGGCGATGCGAGCCGATCTCGCCGATCTCCGCCACGTCACCGAGGCCGCCTTGGACGGTGGATTCAGAGGCCGCGGCGTTGTTCTCGAGGTTCTGCGACGGTTTGAGTTCCTCAAGCTCGCGTATAAGTACCACTGCTCTGCTGAGGATGAGGTTATTTTTCTAGCGCTAGATGGACGAACAAAAAACATAGCTTGTACATATTCGTTGGAGCATAGGAGTATAGATGGTCTTTTTGAATCTATTTTTAGTCGTTTGGATGTATTGTTAGAGGAAAGTAAAGATATTTCAAAGGAATTTCAGGAACTTGTGTTCTGCATCGGGACGCTCCAGGCATTCATTTGCCAGCATATGGTGAAAGAAGAAGAACAGGTTTTTCCTTTGCTCCTGCAGCAATTCTCTGTGAAGGAGCAGGCTTCACTTGTGTGGCAGTTCATGTGTAGTATGCCTTTAGTGCTGCTAGAGGATCTTCTACCGTGGATGATCTCCTCTCTTCAAACCGATGAAAAAGAGGAAGTCATACATTGCATAAAAGAAATTGTACCTGATGAAAAATATCTCCAAGAGGTAGTAAGCTCGTGGCTTGCTAACAAGGGCCAGGCTCGACACACTGGTGATGATGAATCTGCAGATATGAAAAAGTTACTCAAGTCTCATTCCCCTAAGAGGTTCTTTAAAGAAAATTGGAGTTGCATGAAGAAAGACAGCATCCAAACTGATACTGGATACAGTCCTGTTGATGGGCTTCATCTTTGGCATGGTGCCATAAGGAAAGATCTAGAAAAATTATGGGAGAGCTTTATCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010106 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019725 GO:0019787 GO:0019941 GO:0030003 GO:0030163 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0033554 GO:0036211 GO:0042592 GO:0042594 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051603 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0071496 GO:0071704 GO:0098771 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemerythrin zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

311

Amino Acids

35.57

Weight (kDa)

5.61

Isoelectric Point (pI)

52.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hemerythrin	PF01814	40 - 171	2.8e-09	Hemerythrin HHE cation binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18910 AT1G74770 AT1G74770
fragaria_vesca	FvH4_5g15780 FvH4_5g15780 FvH4_5g15780
malus_domestica	MD14G1191800.v1.1
prunus_persica	Prupe.1G314300_v2.0.a1 Prupe.5G184400_v2.0.a1 Prupe.5G184400_v2.0.a1
pyrus_communis	pycom14g15950
rosa_chinensis	RchiOBHm_Chr7g0180341
rosa_laevigata	RLG00000005275
rosa_multiflora	Rmu_sc0003526.1_g000012 Rmu_ssc0000099.1_g000006
rosa_roxburghii	Rroxscaffold_3G00244490 Rroxscaffold_3G00272970
rosa_rugosa	Rorug06G0432400
rosa_samantha	Rh7AG032800 Rh7BG032800 Rh7CG034700 Rh7DG033400
rosa_wichuraiana	Rw7G002740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	887
AccB7I	CCANNNNNTGG	1 cut(s)	478
AccII	CGCG	3 cut(s)	79, 201, 248
AciI	CCGC	6 cut(s)	6, 32, 157, 174, 199, 201
AclWI	GGATC	1 cut(s)	600
AcsI	RAATTY	1 cut(s)	422
AcyI	GRCGYC	1 cut(s)	98
AfaI	GTAC	3 cut(s)	257, 325, 669
AfeI	AGCGCT	1 cut(s)	294
AfiI	CCNNNNNNNGG	3 cut(s)	478, 792, 866
AgsI	TTSAA	3 cut(s)	365, 417, 623
AjiI	CACGTC	1 cut(s)	163
AjnI	CCWGG	2 cut(s)	456, 723
AleI	CACNNNNGTG	2 cut(s)	550, 738
AloI	GAACNNNNNNTCC	2 cut(s)	422, 454
AluBI	AGCT	4 cut(s)	244, 320, 702, 924
AluI	AGCT	4 cut(s)	244, 320, 702, 924
Alw26I	GTCTC	1 cut(s)	783
AlwI	GGATC	1 cut(s)	600
Ama87I	CYCGRG	2 cut(s)	27, 212
Aor51HI	AGCGCT	1 cut(s)	294
AoxI	GGCC	3 cut(s)	171, 196, 721
ApeKI	GCWGC	2 cut(s)	517, 583
ApoI	RAATTY	1 cut(s)	422
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	1 cut(s)	721
AsuC2I	CCSGG	2 cut(s)	28, 29
AsuHPI	GGTGA	3 cut(s)	157, 493, 752
AvaI	CYCGRG	2 cut(s)	27, 212
BanI	GGYRCC	1 cut(s)	887
BauI	CACGAG	1 cut(s)	703
BbsI	GAAGAC	2 cut(s)	39, 60
BbvCI	CCTCAGC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	529, 570
BccI	CCATC	3 cut(s)	293, 347, 860
BcgI	CGANNNNNNTGC	2 cut(s)	91, 125
BciT130I	CCWGG	2 cut(s)	458, 725
BciVI	GTATCC	1 cut(s)	845
BcnI	CCSGG	2 cut(s)	28, 29
BcoDI	GTCTC	1 cut(s)	783
BfaI	CTAG	4 cut(s)	290, 296, 587, 905
BfmI	CTRYAG	2 cut(s)	515, 753
BfoI	RGCGCY	1 cut(s)	296
BfuI	GTATCC	1 cut(s)	845
BglII	AGATCT	1 cut(s)	901
BisI	GCNGC	6 cut(s)	7, 174, 199, 202, 518, 584
BlsI	GCNGC	6 cut(s)	8, 175, 200, 203, 519, 585
Bme1390I	CCNGG	4 cut(s)	28, 29, 458, 725
BmeT110I	CYCGRG	2 cut(s)	27, 212
BmgBI	CACGTC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	721
BmiI	GGNNCC	1 cut(s)	889
BmrFI	CCNGG	4 cut(s)	28, 29, 458, 725
BmsI	GCATC	3 cut(s)	123, 453, 843
BpiI	GAAGAC	2 cut(s)	39, 60
BplI	GAGNNNNNCTC	4 cut(s)	72, 104, 129, 161
BpmI	CTGGAG	1 cut(s)	440
Bpu10I	CCTNAGC	1 cut(s)	270
BpuEI	CTTGAG	2 cut(s)	224, 758
BpuMI	CCSGG	2 cut(s)	28, 29
BsaHI	GRCGYC	1 cut(s)	98
BsaJI	CCNNGG	5 cut(s)	27, 168, 177, 199, 602
Bsc4I	CCNNNNNNNGG	3 cut(s)	478, 792, 866
Bse1I	ACTGG	2 cut(s)	742, 853
Bse3DI	GCAATG	1 cut(s)	649
BseBI	CCWGG	2 cut(s)	458, 725
BseDI	CCNNGG	5 cut(s)	27, 168, 177, 199, 602
BseGI	GGATG	4 cut(s)	280, 391, 612, 834
BseLI	CCNNNNNNNGG	3 cut(s)	478, 792, 866
BseMI	GCAATG	1 cut(s)	649
BseMII	CTCAG	2 cut(s)	107, 261
BseNI	ACTGG	2 cut(s)	742, 853
BseRI	GAGGAG	1 cut(s)	604
BseXI	GCAGC	2 cut(s)	529, 570
Bsh1236I	CGCG	3 cut(s)	79, 201, 248
Bsh1285I	CGRYCG	1 cut(s)	13
BshFI	GGCC	3 cut(s)	173, 198, 723
BshNI	GGYRCC	1 cut(s)	887
BsiEI	CGRYCG	1 cut(s)	13
BsiHKCI	CYCGRG	2 cut(s)	27, 212
BsiSI	CCGG	2 cut(s)	28, 85
BslFI	GGGAC	1 cut(s)	463
BslI	CCNNNNNNNGG	3 cut(s)	478, 792, 866
BsmAI	GTCTC	1 cut(s)	783
BsmFI	GGGAC	1 cut(s)	463
BsmI	GAATGC	1 cut(s)	461
BsnI	GGCC	3 cut(s)	173, 198, 723
BsoBI	CYCGRG	2 cut(s)	27, 212
Bsp1407I	TGTACA	1 cut(s)	323
Bsp143I	GATC	5 cut(s)	142, 151, 592, 609, 901
Bsp68I	TCGCGA	1 cut(s)	79
BspACI	CCGC	6 cut(s)	6, 32, 157, 174, 199, 201
BspANI	GGCC	3 cut(s)	173, 198, 723
BspCNI	CTCAG	2 cut(s)	106, 262
BspFNI	CGCG	3 cut(s)	79, 201, 248
BspLI	GGNNCC	1 cut(s)	889
BspMAI	CTGCAG	2 cut(s)	519, 757
BspPI	GGATC	1 cut(s)	600
BspT107I	GGYRCC	1 cut(s)	887
BsrDI	GCAATG	1 cut(s)	649
BsrGI	TGTACA	1 cut(s)	323
BsrI	ACTGG	2 cut(s)	742, 853
BssECI	CCNNGG	5 cut(s)	27, 168, 177, 199, 602
BssMI	GATC	5 cut(s)	142, 151, 592, 609, 901
BssNI	GRCGYC	1 cut(s)	98
BssSI	CACGAG	1 cut(s)	703
BssT1I	CCWWGG	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	703
Bst2UI	CCWGG	2 cut(s)	458, 725
Bst4CI	ACNGT	5 cut(s)	14, 185, 228, 603, 857
Bst6I	CTCTTC	1 cut(s)	624
BstACI	GRCGYC	1 cut(s)	98
BstAUI	TGTACA	1 cut(s)	323
BstC8I	GCNNGC	6 cut(s)	90, 138, 246, 473, 540, 711
BstDEI	CTNAG	3 cut(s)	93, 270, 789
BstDSI	CCRYGG	2 cut(s)	199, 602
BstF5I	GGATG	4 cut(s)	280, 391, 612, 834
BstFNI	CGCG	3 cut(s)	79, 201, 248
BstH2I	RGCGCY	1 cut(s)	296
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	5 cut(s)	145, 154, 595, 612, 904
BstMAI	GTCTC	1 cut(s)	783
BstMBI	GATC	5 cut(s)	142, 151, 592, 609, 901
BstMCI	CGRYCG	1 cut(s)	13
BstMWI	GCNNNNNNNGC	5 cut(s)	85, 137, 146, 517, 580
BstNI	CCWGG	2 cut(s)	458, 725
BstSCI	CCNGG	4 cut(s)	26, 27, 456, 723
BstSFI	CTRYAG	2 cut(s)	515, 753
BstUI	CGCG	3 cut(s)	79, 201, 248
BstV1I	GCAGC	2 cut(s)	529, 570
BstV2I	GAAGAC	2 cut(s)	39, 60
BstX2I	RGATCY	2 cut(s)	592, 901
BstYI	RGATCY	2 cut(s)	592, 901
BsuI	GTATCC	1 cut(s)	845
BsuRI	GGCC	3 cut(s)	173, 198, 723
BtgI	CCRYGG	2 cut(s)	199, 602
BtgZI	GCGATG	1 cut(s)	146
BtrI	CACGTC	1 cut(s)	163
BtsCI	GGATG	4 cut(s)	280, 391, 612, 834
BtsI	GCAGTG	1 cut(s)	259
BtsIMutI	CAGTG	2 cut(s)	259, 735
BtuMI	TCGCGA	1 cut(s)	79
Cac8I	GCNNGC	6 cut(s)	90, 138, 246, 473, 540, 711
CfoI	GCGC	1 cut(s)	295
Cfr13I	GGNCC	1 cut(s)	721
Cfr42I	CCGCGG	1 cut(s)	202
Cfr9I	CCCGGG	1 cut(s)	27
CseI	GACGC	2 cut(s)	106, 460
Csp6I	GTAC	3 cut(s)	256, 324, 668
CviAII	CATG	3 cut(s)	562, 820, 884
CviQI	GTAC	3 cut(s)	256, 324, 668
DdeI	CTNAG	3 cut(s)	93, 270, 789
DpnI	GATC	5 cut(s)	144, 153, 594, 611, 903
DpnII	GATC	5 cut(s)	142, 151, 592, 609, 901
DraI	TTTAAA	1 cut(s)	802
Eam1104I	CTCTTC	1 cut(s)	624
EarI	CTCTTC	1 cut(s)	624
EciI	GGCGGA	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	177
Eco47III	AGCGCT	1 cut(s)	294
Eco88I	CYCGRG	2 cut(s)	27, 212
EcoRII	CCWGG	2 cut(s)	456, 723
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	3 cut(s)	565, 823, 887
FalI	AAGNNNNNCTT	2 cut(s)	782, 814
FaqI	GGGAC	1 cut(s)	463
FatI	CATG	3 cut(s)	561, 819, 883
FauNDI	CATATG	1 cut(s)	477
Fnu4HI	GCNGC	6 cut(s)	7, 174, 199, 202, 518, 584
FokI	GGATG	4 cut(s)	287, 398, 619, 821
Fsp4HI	GCNGC	6 cut(s)	7, 174, 199, 202, 518, 584
FspBI	CTAG	4 cut(s)	290, 296, 587, 905
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	6 cut(s)	7, 174, 199, 202, 518, 584
GsuI	CTGGAG	1 cut(s)	440
HaeII	RGCGCY	1 cut(s)	296
HaeIII	GGCC	3 cut(s)	173, 198, 723
HapII	CCGG	2 cut(s)	28, 85
HgaI	GACGC	2 cut(s)	106, 460
HhaI	GCGC	1 cut(s)	295
Hin1I	GRCGYC	1 cut(s)	98
Hin1II	CATG	3 cut(s)	565, 823, 887
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HinfI	GANTC	6 cut(s)	74, 81, 103, 189, 365, 749
HpaII	CCGG	2 cut(s)	28, 85
HphI	GGTGA	3 cut(s)	157, 493, 752
Hpy188I	TCNGA	3 cut(s)	73, 96, 194
Hpy188III	TCNNGA	6 cut(s)	17, 78, 212, 428, 448, 905
Hpy99I	CGWCG	2 cut(s)	61, 228
HpyAV	CCTTC	1 cut(s)	526
HpyCH4III	ACNGT	5 cut(s)	14, 185, 228, 603, 857
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	5 cut(s)	444, 517, 654, 755, 819
HpyF10VI	GCNNNNNNNGC	5 cut(s)	85, 137, 146, 517, 580
HpyF3I	CTNAG	3 cut(s)	93, 270, 789
HpySE526I	ACGT	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	98
Hsp92II	CATG	3 cut(s)	565, 823, 887
HspAI	GCGC	1 cut(s)	293
KspI	CCGCGG	1 cut(s)	202
Kzo9I	GATC	5 cut(s)	142, 151, 592, 609, 901
LmnI	GCTCC	4 cut(s)	337, 459, 516, 535
Lsp1109I	GCAGC	2 cut(s)	529, 570
LweI	GCATC	3 cut(s)	123, 453, 843
MaeI	CTAG	4 cut(s)	290, 296, 587, 905
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	3 cut(s)	14, 163, 768
MalI	GATC	5 cut(s)	144, 153, 594, 611, 903
MboI	GATC	5 cut(s)	142, 151, 592, 609, 901
MboII	GAAGA	9 cut(s)	39, 42, 45, 60, 500, 503, 587, 611, 835
MfeI	CAATTG	1 cut(s)	931
MflI	RGATCY	2 cut(s)	592, 901
MluCI	AATT	6 cut(s)	422, 521, 663, 808, 911, 931
MlyI	GAGTC	2 cut(s)	83, 90
MmeI	TCCRAC	1 cut(s)	315
MseI	TTAA	1 cut(s)	801
MslI	CAYNNNNRTG	2 cut(s)	550, 738
MspA1I	CMGCKG	1 cut(s)	201
MspI	CCGG	2 cut(s)	28, 85
MspR9I	CCNGG	4 cut(s)	28, 29, 458, 725
MunI	CAATTG	1 cut(s)	931
Mva1269I	GAATGC	1 cut(s)	461
MvaI	CCWGG	2 cut(s)	458, 725
MvnI	CGCG	3 cut(s)	79, 201, 248
MwoI	GCNNNNNNNGC	5 cut(s)	85, 137, 146, 517, 580
NciI	CCSGG	2 cut(s)	28, 29
NdeI	CATATG	1 cut(s)	477
NdeII	GATC	5 cut(s)	142, 151, 592, 609, 901
NlaIII	CATG	3 cut(s)	565, 823, 887
NlaIV	GGNNCC	1 cut(s)	889
NmuCI	GTSAC	2 cut(s)	14, 163
NruI	TCGCGA	1 cut(s)	79
OliI	CACNNNNGTG	2 cut(s)	550, 738
PaeR7I	CTCGAG	1 cut(s)	212
PctI	GAATGC	1 cut(s)	461
PfeI	GAWTC	4 cut(s)	103, 189, 365, 749
PflMI	CCANNNNNTGG	1 cut(s)	478
PkrI	GCNGC	6 cut(s)	8, 175, 200, 203, 519, 585
PleI	GAGTC	2 cut(s)	82, 89
PpsI	GAGTC	2 cut(s)	82, 89
Psp6I	CCWGG	2 cut(s)	456, 723
PspGI	CCWGG	2 cut(s)	456, 723
PspN4I	GGNNCC	1 cut(s)	889
PspPI	GGNCC	1 cut(s)	721
PstI	CTGCAG	2 cut(s)	519, 757
PsuI	RGATCY	2 cut(s)	592, 901
RruI	TCGCGA	1 cut(s)	79
RsaI	GTAC	3 cut(s)	257, 325, 669
RsaNI	GTAC	3 cut(s)	256, 324, 668
RseI	CAYNNNNRTG	2 cut(s)	550, 738
SacII	CCGCGG	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	801
SatI	GCNGC	6 cut(s)	7, 174, 199, 202, 518, 584
Sau3AI	GATC	5 cut(s)	142, 151, 592, 609, 901
Sau96I	GGNCC	1 cut(s)	721
SchI	GAGTC	2 cut(s)	83, 90
ScrFI	CCNGG	4 cut(s)	28, 29, 458, 725
SfaNI	GCATC	3 cut(s)	123, 453, 843
SfcI	CTRYAG	2 cut(s)	515, 753
Sfr274I	CTCGAG	1 cut(s)	212
Sfr303I	CCGCGG	1 cut(s)	202
SgrBI	CCGCGG	1 cut(s)	202
SlaI	CTCGAG	1 cut(s)	212
SmaI	CCCGGG	1 cut(s)	29
SmiMI	CAYNNNNRTG	2 cut(s)	550, 738
SmlI	CTYRAG	3 cut(s)	212, 239, 773
SmoI	CTYRAG	3 cut(s)	212, 239, 773
Sse9I	AATT	6 cut(s)	422, 521, 663, 808, 911, 931
SsiI	CCGC	6 cut(s)	6, 32, 157, 174, 199, 201
SspMI	CTAG	4 cut(s)	290, 296, 587, 905
StyD4I	CCNGG	4 cut(s)	26, 27, 456, 723
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	5 cut(s)	14, 185, 228, 603, 857
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	2 cut(s)	213, 730
TasI	AATT	6 cut(s)	422, 521, 663, 808, 911, 931
TatI	WGTACW	1 cut(s)	323
TauI	GCSGC	4 cut(s)	9, 176, 201, 204
TfiI	GAWTC	4 cut(s)	103, 189, 365, 749
Tru1I	TTAA	1 cut(s)	801
Tru9I	TTAA	1 cut(s)	801
TscAI	CASTG	2 cut(s)	266, 742
TseFI	GTSAC	2 cut(s)	14, 163
TseI	GCWGC	2 cut(s)	517, 583
Tsp45I	GTSAC	2 cut(s)	14, 163
TspDTI	ATGAA	8 cut(s)	454, 550, 645, 690, 762, 776, 836, 863
TspMI	CCCGGG	1 cut(s)	27
TspRI	CASTG	2 cut(s)	266, 742
Van91I	CCANNNNNTGG	1 cut(s)	478
XapI	RAATTY	1 cut(s)	422
XbaI	TCTAGA	1 cut(s)	904
XcmI	CCANNNNNNNNNTGG	1 cut(s)	845
XhoI	CTCGAG	1 cut(s)	212
XmaI	CCCGGG	1 cut(s)	27
XspI	CTAG	4 cut(s)	290, 296, 587, 905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.