pycom14g16610

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0007835
Physical Location & Seq
Forward (+)
18843557 .. 18845654
2098 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1512 bp
ATGTTGGAAAAGAGTAGGATTCCATCGAAGTTTATTTTCTACTTGATAACGATTTCGGTGTTCCTTTTAATCTCTTCTTCTGTCTTCCTACTTCAGTTTAGCAATACTTCTTTTGCACCCACAGTGTTTAAGCTTATTGTTCTTAATGGCACATACTTAGAGCCCCTTGTAAAAAGTAGGGACAAAAACCTTCCTTCCTTCTCTTCCGAGGTTCCCCGAGTTGATGCTAAAAGATCCACAAAAAGATGTGAATTGGGATGTCAAGTTTCCAATTCAAGCAAGAAGTTGGGATCTTTAGAAAAAAAGAAAATGGTTGCTTGTGACTTGACGCAGGCTCTCTTGAGGGTGTTTATGTATGAGTTGCCTCCTGAGTTTCACTTTGGGTTATTGGGTTGGAAGGGTAAGGAGAATCAAACATGGCCAAATGTCAAAAACCTGAGTCTCATTCCGGCTTATCCAGGTGGCCTGAATTTACAGCACAGTATCGAATACTGGCTCACCCTTGATCTTCTATCATCAAGTATCCCAACTGTGGTTAGACCTTGCACGGTAGTCAGGGTGCACAATTCAAGTCAAGCAGATGTTATTTTTATCCCATTCTTCGCATCCCTGAGTTACAACAGGCATTCTAAGCTTCGTGGAAACGAGAAAGTAAGTGTGAACAAGAAGTTGCAGGGAAAGTTGGTGCAGTATCTGATGGGTCGGGATGAATGGAAAAGAAGGGGTGGAAAGGATCATTTACTAGTTGCTCACCATCCAAATAGCATGTTAGATGCAAGAAAGAAGTTGGGCTCTGCCATGTTTGTGCTTGCGGATTTTGGAAGATACCCAGCTGAAACAGCAAATCTTGAGAAGGACATAATTGCTCCTTATAGACATTTGGTACTGACTGTTCAGAGCAGCAAATCACCCTCATTCAATGAACGTCCTATACTATTATATTTCCGAGGAGCAATATACAGGAAAGATGGAGGAATAGTACGGAAGAAATTGTATTATCTTCTTAAAGATGAGAAGGATGTCCACTTCACTTTTGGTAGCGTTCAAGGACATGGTATTAACAAGGCAAGCCAAGGAATGGCCTCATCAAAGTTTTGCCTGAATCTTGCTGGTGATACCCCTTCCTCAAATCGCCTATTTGATGCCATTGCTAGCCATTGTGTCCCTGTAATAATTAGCGATGAGATTGAGCTACCATTTGAAGATGTGTTAGACTACTCACAGTTTTGCATATTTGTTCGCTCATCTTACGCTAGTAAGAAGGGTTACCTACTGAATATTCTCCGAGGAATCAAGCAAGAAACATGGACCAAGATGTGGGTAAGGTTGAAGGAAGTCGTACATCATTTCGGATATCAGTATCCATCCCAGCCAGGTGATGCAGTTGATATGATTTGGCAGGCAGTTTCTCATAAGAAATCCTCCACACAGTTTAAATTTCACTCCAGACAGTTTAAATTTCACAGGAAGAAGAGATATGACAGGTCAACTTCTGGTATAAGAACAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

504

Amino Acids

57.44

Weight (kDa)

9.83

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 113 - 425 7.5e-59 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1078, 1317
AciI CCGC 1 cut(s) 812
AclWI GGATC 3 cut(s) 228, 298, 741
AcoI YGGCCR 1 cut(s) 419
AcsI RAATTY 3 cut(s) 469, 1436, 1457
AcuI CTGAAG 1 cut(s) 77
AfaI GTAC 3 cut(s) 885, 981, 1341
AfiI CCNNNNNNNGG 3 cut(s) 532, 1078, 1317
AgsI TTSAA 6 cut(s) 276, 570, 919, 1046, 1202, 1330
AhlI ACTAGT 1 cut(s) 742
AjnI CCWGG 2 cut(s) 457, 1372
AluBI AGCT 4 cut(s) 133, 634, 833, 1192
AluI AGCT 4 cut(s) 133, 634, 833, 1192
Alw21I GWGCWC 1 cut(s) 564
Alw26I GTCTC 1 cut(s) 446
Alw44I GTGCAC 1 cut(s) 560
AlwI GGATC 3 cut(s) 228, 298, 741
AlwNI CAGNNNCTG 1 cut(s) 694
Ama87I CYCGRG 1 cut(s) 216
AoxI GGCC 3 cut(s) 419, 463, 1080
ApaLI GTGCAC 1 cut(s) 560
ApeKI GCWGC 1 cut(s) 900
ApoI RAATTY 3 cut(s) 469, 1436, 1457
AspS9I GGNCC 1 cut(s) 1308
AsuHPI GGTGA 5 cut(s) 490, 743, 900, 1124, 1388
AsuNHI GCTAGC 1 cut(s) 1151
AvaI CYCGRG 1 cut(s) 216
AvaII GGWCC 1 cut(s) 1308
BaeGI GKGCMC 1 cut(s) 564
BalI TGGCCA 1 cut(s) 421
BanII GRGCYC 2 cut(s) 165, 794
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 564
BbvI GCAGC 1 cut(s) 912
BccI CCATC 5 cut(s) 31, 691, 762, 962, 1372
BciT130I CCWGG 2 cut(s) 459, 1374
BciVI GTATCC 2 cut(s) 533, 1371
BcoDI GTCTC 1 cut(s) 446
BcuI ACTAGT 1 cut(s) 742
BfaI CTAG 3 cut(s) 743, 1152, 1254
BfuI GTATCC 2 cut(s) 533, 1371
BisI GCNGC 1 cut(s) 901
BlsI GCNGC 1 cut(s) 902
Bme1390I CCNGG 2 cut(s) 459, 1374
Bme18I GGWCC 1 cut(s) 1308
BmeT110I CYCGRG 1 cut(s) 216
BmgT120I GGNCC 1 cut(s) 1308
BmiI GGNNCC 1 cut(s) 213
BmrFI CCNGG 2 cut(s) 459, 1374
BmsI GCATC 5 cut(s) 214, 614, 763, 1132, 1369
BmtI GCTAGC 1 cut(s) 1155
BpiI GAAGAC 1 cut(s) 76
BpmI CTGGAG 1 cut(s) 1429
BpuEI CTTGAG 2 cut(s) 361, 869
BsaJI CCNNGG 4 cut(s) 207, 946, 1072, 1285
BsaXI ACNNNNNCTCC 2 cut(s) 963, 993
Bsc4I CCNNNNNNNGG 3 cut(s) 532, 1078, 1317
Bse1I ACTGG 1 cut(s) 497
Bse3DI GCAATG 1 cut(s) 1146
BseBI CCWGG 2 cut(s) 459, 1374
BseDI CCNNGG 4 cut(s) 207, 946, 1072, 1285
BseGI GGATG 6 cut(s) 263, 605, 712, 754, 1024, 1364
BseLI CCNNNNNNNGG 3 cut(s) 532, 1078, 1317
BseMI GCAATG 1 cut(s) 1146
BseMII CTCAG 3 cut(s) 360, 428, 602
BseNI ACTGG 1 cut(s) 497
BseRI GAGGAG 1 cut(s) 963
BseSI GKGCMC 1 cut(s) 564
BseXI GCAGC 1 cut(s) 912
BseYI CCCAGC 2 cut(s) 829, 1368
BsgI GTGCAG 1 cut(s) 707
BshFI GGCC 3 cut(s) 421, 465, 1082
BsiHKAI GWGCWC 1 cut(s) 564
BsiHKCI CYCGRG 1 cut(s) 216
BsiSI CCGG 1 cut(s) 449
BslFI GGGAC 2 cut(s) 194, 1148
BslI CCNNNNNNNGG 3 cut(s) 532, 1078, 1317
BsmAI GTCTC 1 cut(s) 446
BsmFI GGGAC 2 cut(s) 194, 1148
BsmI GAATGC 1 cut(s) 625
BsnI GGCC 3 cut(s) 421, 465, 1082
BsoBI CYCGRG 1 cut(s) 216
Bsp1286I GDGCHC 3 cut(s) 165, 564, 794
Bsp143I GATC 4 cut(s) 233, 290, 505, 733
BspACI CCGC 1 cut(s) 812
BspANI GGCC 3 cut(s) 421, 465, 1082
BspCNI CTCAG 3 cut(s) 361, 429, 603
BspLI GGNNCC 1 cut(s) 213
BspOI GCTAGC 1 cut(s) 1155
BspPI GGATC 3 cut(s) 228, 298, 741
BsrDI GCAATG 1 cut(s) 1146
BsrI ACTGG 1 cut(s) 497
BssECI CCNNGG 4 cut(s) 207, 946, 1072, 1285
BssMI GATC 4 cut(s) 233, 290, 505, 733
BssT1I CCWWGG 1 cut(s) 1072
Bst2UI CCWGG 2 cut(s) 459, 1374
Bst4CI ACNGT 8 cut(s) 124, 482, 532, 550, 892, 1224, 1431, 1452
Bst6I CTCTTC 3 cut(s) 79, 208, 1466
BstC8I GCNNGC 5 cut(s) 333, 810, 1069, 1153, 1401
BstDEI CTNAG 5 cut(s) 157, 369, 437, 611, 630
BstEII GGTNACC 1 cut(s) 1265
BstF5I GGATG 6 cut(s) 263, 605, 712, 754, 1024, 1364
BstKTI GATC 4 cut(s) 236, 293, 508, 736
BstMAI GTCTC 1 cut(s) 446
BstMBI GATC 4 cut(s) 233, 290, 505, 733
BstMWI GCNNNNNNNGC 2 cut(s) 631, 839
BstNI CCWGG 2 cut(s) 459, 1374
BstNSI RCATGY 1 cut(s) 769
BstPI GGTNACC 1 cut(s) 1265
BstSCI CCNGG 2 cut(s) 457, 1372
BstSLI GKGCMC 1 cut(s) 564
BstV1I GCAGC 1 cut(s) 912
BstV2I GAAGAC 1 cut(s) 76
BstX2I RGATCY 2 cut(s) 233, 290
BstYI RGATCY 2 cut(s) 233, 290
BsuI GTATCC 2 cut(s) 533, 1371
BsuRI GGCC 3 cut(s) 421, 465, 1082
BtgZI GCGATG 1 cut(s) 1194
BtsCI GGATG 6 cut(s) 263, 605, 712, 754, 1024, 1364
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 5 cut(s) 333, 810, 1069, 1153, 1401
CaiI CAGNNNCTG 1 cut(s) 694
Cfr13I GGNCC 1 cut(s) 1308
CseI GACGC 1 cut(s) 337
Csp6I GTAC 3 cut(s) 884, 980, 1340
CviAII CATG 5 cut(s) 417, 766, 799, 1052, 1305
CviQI GTAC 3 cut(s) 884, 980, 1340
DdeI CTNAG 5 cut(s) 157, 369, 437, 611, 630
DpnI GATC 4 cut(s) 235, 292, 507, 735
DpnII GATC 4 cut(s) 233, 290, 505, 733
DraI TTTAAA 2 cut(s) 1435, 1456
EaeI YGGCCR 1 cut(s) 419
Eam1104I CTCTTC 3 cut(s) 79, 208, 1466
EarI CTCTTC 3 cut(s) 79, 208, 1466
Eco130I CCWWGG 1 cut(s) 1072
Eco24I GRGCYC 2 cut(s) 165, 794
Eco32I GATATC 1 cut(s) 1355
Eco47I GGWCC 1 cut(s) 1308
Eco57I CTGAAG 1 cut(s) 77
Eco88I CYCGRG 1 cut(s) 216
Eco91I GGTNACC 1 cut(s) 1265
EcoO65I GGTNACC 1 cut(s) 1265
EcoRII CCWGG 2 cut(s) 457, 1372
EcoRV GATATC 1 cut(s) 1355
EcoT14I CCWWGG 1 cut(s) 1072
EcoT38I GRGCYC 2 cut(s) 165, 794
ErhI CCWWGG 1 cut(s) 1072
FaeI CATG 5 cut(s) 420, 769, 802, 1055, 1308
FaqI GGGAC 2 cut(s) 194, 1148
FatI CATG 5 cut(s) 416, 765, 798, 1051, 1304
Fnu4HI GCNGC 1 cut(s) 901
FokI GGATG 6 cut(s) 270, 592, 719, 741, 1031, 1351
FriOI GRGCYC 2 cut(s) 165, 794
Fsp4HI GCNGC 1 cut(s) 901
FspBI CTAG 3 cut(s) 743, 1152, 1254
GluI GCNGC 1 cut(s) 901
GsaI CCCAGC 2 cut(s) 833, 1372
GsuI CTGGAG 1 cut(s) 1429
HaeIII GGCC 3 cut(s) 421, 465, 1082
HapII CCGG 1 cut(s) 449
HgaI GACGC 1 cut(s) 337
Hin1II CATG 5 cut(s) 420, 769, 802, 1055, 1308
HincII GTYRAC 1 cut(s) 1488
HindII GTYRAC 1 cut(s) 1488
HindIII AAGCTT 2 cut(s) 131, 632
HinfI GANTC 5 cut(s) 19, 409, 439, 1102, 1290
HpaII CCGG 1 cut(s) 449
HphI GGTGA 5 cut(s) 490, 743, 900, 1124, 1388
Hpy166II GTNNAC 4 cut(s) 562, 661, 1024, 1488
Hpy188I TCNGA 6 cut(s) 208, 696, 897, 947, 1286, 1352
Hpy188III TCNNGA 5 cut(s) 340, 368, 704, 848, 1446
Hpy8I GTNNAC 4 cut(s) 562, 661, 1024, 1488
HpyCH4III ACNGT 8 cut(s) 124, 482, 532, 550, 892, 1224, 1431, 1452
HpyCH4IV ACGT 1 cut(s) 925
HpyCH4V TGCA 8 cut(s) 116, 546, 562, 673, 688, 776, 1230, 1382
HpyF10VI GCNNNNNNNGC 2 cut(s) 631, 839
HpyF3I CTNAG 5 cut(s) 157, 369, 437, 611, 630
HpySE526I ACGT 1 cut(s) 925
Hsp92II CATG 5 cut(s) 420, 769, 802, 1055, 1308
Kzo9I GATC 4 cut(s) 233, 290, 505, 733
LmnI GCTCC 2 cut(s) 871, 950
Lsp1109I GCAGC 1 cut(s) 912
LweI GCATC 5 cut(s) 214, 614, 763, 1132, 1369
MaeI CTAG 3 cut(s) 743, 1152, 1254
MaeII ACGT 1 cut(s) 925
MaeIII GTNAC 3 cut(s) 320, 614, 1265
MalI GATC 4 cut(s) 235, 292, 507, 735
MboI GATC 4 cut(s) 233, 290, 505, 733
MflI RGATCY 2 cut(s) 233, 290
MhlI GDGCHC 3 cut(s) 165, 564, 794
MlsI TGGCCA 1 cut(s) 421
MluCI AATT 9 cut(s) 251, 271, 469, 565, 861, 989, 1173, 1436, 1457
MluNI TGGCCA 1 cut(s) 421
MlyI GAGTC 1 cut(s) 448
MmeI TCCRAC 1 cut(s) 374
Mox20I TGGCCA 1 cut(s) 421
MscI TGGCCA 1 cut(s) 421
MseI TTAA 7 cut(s) 68, 129, 144, 1005, 1059, 1434, 1455
MslI CAYNNNNRTG 1 cut(s) 803
Msp20I TGGCCA 1 cut(s) 421
MspA1I CMGCKG 1 cut(s) 833
MspI CCGG 1 cut(s) 449
MspR9I CCNGG 2 cut(s) 459, 1374
Mva1269I GAATGC 1 cut(s) 625
MvaI CCWGG 2 cut(s) 459, 1374
MwoI GCNNNNNNNGC 2 cut(s) 631, 839
NdeII GATC 4 cut(s) 233, 290, 505, 733
NheI GCTAGC 1 cut(s) 1151
NlaIII CATG 5 cut(s) 420, 769, 802, 1055, 1308
NlaIV GGNNCC 1 cut(s) 213
NmuCI GTSAC 1 cut(s) 320
NspI RCATGY 1 cut(s) 769
PctI GAATGC 1 cut(s) 625
PfeI GAWTC 4 cut(s) 19, 409, 1102, 1290
PflMI CCANNNNNTGG 2 cut(s) 1078, 1317
PkrI GCNGC 1 cut(s) 902
PleI GAGTC 1 cut(s) 447
PpsI GAGTC 1 cut(s) 447
Psp6I CCWGG 2 cut(s) 457, 1372
PspEI GGTNACC 1 cut(s) 1265
PspFI CCCAGC 2 cut(s) 829, 1368
PspGI CCWGG 2 cut(s) 457, 1372
PspN4I GGNNCC 1 cut(s) 213
PspPI GGNCC 1 cut(s) 1308
PsrI GAACNNNNNNTAC 4 cut(s) 876, 908, 915, 947
PstNI CAGNNNCTG 1 cut(s) 694
PsuI RGATCY 2 cut(s) 233, 290
PvuII CAGCTG 1 cut(s) 833
RsaI GTAC 3 cut(s) 885, 981, 1341
RsaNI GTAC 3 cut(s) 884, 980, 1340
RseI CAYNNNNRTG 1 cut(s) 803
SaqAI TTAA 7 cut(s) 68, 129, 144, 1005, 1059, 1434, 1455
SatI GCNGC 1 cut(s) 901
Sau3AI GATC 4 cut(s) 233, 290, 505, 733
Sau96I GGNCC 1 cut(s) 1308
SchI GAGTC 1 cut(s) 448
ScrFI CCNGG 2 cut(s) 459, 1374
SduI GDGCHC 3 cut(s) 165, 564, 794
SfaNI GCATC 5 cut(s) 214, 614, 763, 1132, 1369
SinI GGWCC 1 cut(s) 1308
SmiMI CAYNNNNRTG 1 cut(s) 803
SmlI CTYRAG 2 cut(s) 340, 848
SmoI CTYRAG 2 cut(s) 340, 848
SpeI ACTAGT 1 cut(s) 742
Sse9I AATT 9 cut(s) 251, 271, 469, 565, 861, 989, 1173, 1436, 1457
SsiI CCGC 1 cut(s) 812
SspI AATATT 1 cut(s) 1279
SspMI CTAG 3 cut(s) 743, 1152, 1254
StyD4I CCNGG 2 cut(s) 457, 1372
StyI CCWWGG 1 cut(s) 1072
TaaI ACNGT 8 cut(s) 124, 482, 532, 550, 892, 1224, 1431, 1452
TaiI ACGT 1 cut(s) 928
TaqI TCGA 2 cut(s) 26, 486
TasI AATT 9 cut(s) 251, 271, 469, 565, 861, 989, 1173, 1436, 1457
TfiI GAWTC 4 cut(s) 19, 409, 1102, 1290
Tru1I TTAA 7 cut(s) 68, 129, 144, 1005, 1059, 1434, 1455
Tru9I TTAA 7 cut(s) 68, 129, 144, 1005, 1059, 1434, 1455
TscAI CASTG 1 cut(s) 129
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 1 cut(s) 900
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 2 cut(s) 723, 936
TspGWI ACGGA 1 cut(s) 997
TspRI CASTG 1 cut(s) 129
Van91I CCANNNNNTGG 2 cut(s) 1078, 1317
VneI GTGCAC 1 cut(s) 560
VpaK11BI GGWCC 1 cut(s) 1308
XapI RAATTY 3 cut(s) 469, 1436, 1457
XceI RCATGY 1 cut(s) 769
XcmI CCANNNNNNNNNTGG 1 cut(s) 1031
XspI CTAG 3 cut(s) 743, 1152, 1254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.