pycom14g17350

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0006410
Physical Location & Seq
Forward (+)
19326776 .. 19327734
959 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g17350.1

Sequence Viewer

Length: 375 bp
ATGCATGCAGTGACTTTCTCCTGCGGGGAGAGAGAGTGGTTTTTCTTCATCCATCAAGGTGAAAGCAGTCATGCATCCCAAACCAGAAGCAGTATTCGAGTAGTTGGAAATGGTTTAGGGTTTTGGAAACCCGAGTACGGATCAGAAACTCCCATCTGCGATGAGGATGGAAGTTTCTTTGCCTCCAAGATCTCTCTCACTTACTTCTCGGGAAGAAGTGCTTCGCATGCAAAGAGAACACATTGGAAAATGGTGGAGTACTATTTACATGAACATGATCACGTCGAGTCTAACACAGAAGAAAAGTACCAAGTTCGGAGAAGAGAGTGGATAGTGGGCCGAATGATAAGAGGAACGGATTACACTGGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

125

Amino Acids

14.51

Weight (kDa)

6.7

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 8 - 89 5e-09 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 24
AclWI GGATC 1 cut(s) 148
AfaI GTAC 3 cut(s) 137, 260, 308
AfiI CCNNNNNNNGG 1 cut(s) 137
AjiI CACGTC 1 cut(s) 283
AlwI GGATC 1 cut(s) 148
Ama87I CYCGRG 2 cut(s) 131, 208
AoxI GGCC 1 cut(s) 337
Asp700I GAANNNNTTC 1 cut(s) 220
AspS9I GGNCC 1 cut(s) 337
AsuHPI GGTGA 1 cut(s) 71
AvaI CYCGRG 2 cut(s) 131, 208
BccI CCATC 3 cut(s) 60, 161, 161
BclI TGATCA 1 cut(s) 277
BglII AGATCT 1 cut(s) 189
BmcAI AGTACT 1 cut(s) 260
BmeT110I CYCGRG 2 cut(s) 131, 208
BmgBI CACGTC 1 cut(s) 283
BmgT120I GGNCC 1 cut(s) 337
BmsI GCATC 1 cut(s) 83
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 370
BseGI GGATG 3 cut(s) 48, 74, 172
BseLI CCNNNNNNNGG 1 cut(s) 137
BseNI ACTGG 1 cut(s) 370
BshFI GGCC 1 cut(s) 339
BsiHKCI CYCGRG 2 cut(s) 131, 208
BslI CCNNNNNNNGG 1 cut(s) 137
BsnI GGCC 1 cut(s) 339
BsoBI CYCGRG 2 cut(s) 131, 208
Bsp143I GATC 3 cut(s) 140, 189, 277
BspACI CCGC 1 cut(s) 24
BspANI GGCC 1 cut(s) 339
BspPI GGATC 1 cut(s) 148
BsrI ACTGG 1 cut(s) 370
BssMI GATC 3 cut(s) 140, 189, 277
Bst6I CTCTTC 1 cut(s) 316
BstC8I GCNNGC 2 cut(s) 6, 228
BstF5I GGATG 3 cut(s) 48, 74, 172
BstKTI GATC 3 cut(s) 143, 192, 280
BstMBI GATC 3 cut(s) 140, 189, 277
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstNSI RCATGY 2 cut(s) 8, 230
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
BsuRI GGCC 1 cut(s) 339
BtgZI GCGATG 1 cut(s) 174
BtrI CACGTC 1 cut(s) 283
BtsCI GGATG 3 cut(s) 48, 74, 172
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 2 cut(s) 15, 363
Cac8I GCNNGC 2 cut(s) 6, 228
Cfr13I GGNCC 1 cut(s) 337
Csp6I GTAC 3 cut(s) 136, 259, 307
CviAII CATG 5 cut(s) 5, 71, 227, 269, 275
CviJI RGCY 1 cut(s) 339
CviKI_1 RGCY 1 cut(s) 339
CviQI GTAC 3 cut(s) 136, 259, 307
DpnI GATC 3 cut(s) 142, 191, 279
DpnII GATC 3 cut(s) 140, 189, 277
Eam1104I CTCTTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 316
Eco88I CYCGRG 2 cut(s) 131, 208
EcoT22I ATGCAT 2 cut(s) 6, 76
FaeI CATG 5 cut(s) 8, 74, 230, 272, 278
FaiI YATR 5 cut(s) 6, 72, 228, 270, 276
FalI AAGNNNNNCTT 2 cut(s) 205, 237
FatI CATG 5 cut(s) 4, 70, 226, 268, 274
FauI CCCGC 1 cut(s) 17
FbaI TGATCA 1 cut(s) 277
FokI GGATG 3 cut(s) 35, 61, 179
HaeIII GGCC 1 cut(s) 339
Hin1II CATG 5 cut(s) 8, 74, 230, 272, 278
HinfI GANTC 1 cut(s) 287
HphI GGTGA 1 cut(s) 71
Hpy188I TCNGA 2 cut(s) 145, 318
Hpy188III TCNNGA 1 cut(s) 210
Hpy99I CGWCG 1 cut(s) 287
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 4 cut(s) 4, 8, 74, 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpySE526I ACGT 1 cut(s) 282
Hsp92II CATG 5 cut(s) 8, 74, 230, 272, 278
Ksp22I TGATCA 1 cut(s) 277
Kzo9I GATC 3 cut(s) 140, 189, 277
LpnPI CCDG 3 cut(s) 34, 97, 351
LweI GCATC 1 cut(s) 83
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 1 cut(s) 10
MalI GATC 3 cut(s) 142, 191, 279
MboI GATC 3 cut(s) 140, 189, 277
MboII GAAGA 4 cut(s) 37, 225, 311, 333
MflI RGATCY 1 cut(s) 189
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 3 cut(s) 157, 193, 344
Mph1103I ATGCAT 2 cut(s) 6, 76
MroXI GAANNNNTTC 1 cut(s) 220
MslI CAYNNNNRTG 2 cut(s) 57, 273
MwoI GCNNNNNNNGC 1 cut(s) 227
NdeII GATC 3 cut(s) 140, 189, 277
NlaIII CATG 5 cut(s) 8, 74, 230, 272, 278
NmuCI GTSAC 1 cut(s) 10
NsiI ATGCAT 2 cut(s) 6, 76
NspI RCATGY 2 cut(s) 8, 230
PaeI GCATGC 2 cut(s) 8, 230
PdmI GAANNNNTTC 1 cut(s) 220
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
PspPI GGNCC 1 cut(s) 337
PsuI RGATCY 1 cut(s) 189
RsaI GTAC 3 cut(s) 137, 260, 308
RsaNI GTAC 3 cut(s) 136, 259, 307
RseI CAYNNNNRTG 2 cut(s) 57, 273
Sau3AI GATC 3 cut(s) 140, 189, 277
Sau96I GGNCC 1 cut(s) 337
ScaI AGTACT 1 cut(s) 260
SchI GAGTC 1 cut(s) 296
SetI ASST 2 cut(s) 61, 285
SfaNI GCATC 1 cut(s) 83
SmiMI CAYNNNNRTG 2 cut(s) 57, 273
SphI GCATGC 2 cut(s) 8, 230
SsiI CCGC 1 cut(s) 24
TaiI ACGT 1 cut(s) 285
TaqI TCGA 2 cut(s) 97, 285
TatI WGTACW 1 cut(s) 258
TscAI CASTG 2 cut(s) 15, 370
TseFI GTSAC 1 cut(s) 10
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 2 cut(s) 37, 285
TspGWI ACGGA 2 cut(s) 153, 371
TspRI CASTG 2 cut(s) 15, 370
XceI RCATGY 2 cut(s) 8, 230
XmnI GAANNNNTTC 1 cut(s) 220
ZrmI AGTACT 1 cut(s) 260
Zsp2I ATGCAT 2 cut(s) 6, 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.