Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002285.1

Orthogroup ID

OG0006410

Physical Location & Seq

Genomic Coordinates Forward (+)

151427 .. 156054

Gene Structure 4628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002285.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgggatcccagaaaggagtagtagtgagctctgatttgcttccagttgggtttaggtttatgccaacagatgaagagctggtcactcactatctaatgaacaaagcttgttccagagctgtaccagttgctgatgcgattcaggagatcgatgcgactcggttttacagcaaccatccaaagaatctagtgacgttctctgatggagagagggagtggttcttctttattcatgaagacgatgaaagttgcagcagccatgcccagagaaaaagaactgttcgcgaagtcggaaatggtatcaaagaatttcgactgacccgacccgaacccggaattatgacccgacttttccggcgagctcctgccacctccggcgacaaaactttccagacaggatcgcctccgccgtctggtcgtccctctggtgttctcttacggcgaatctccgtctcagtggcagttcaaggcggtgcagattggagaaatcggacccgaccggaaaacacagttccgacatcggcacggcttcgatttttcttggttgaactcagaacagcctcgccgatcgatccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

192

Amino Acids

21.52

Weight (kDa)

9.61

Isoelectric Point (pI)

57.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006410)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14080 FvH4_5g14170
malus_domestica	MD14G1210000.v1.1
prunus_persica	Prupe.1G234600_v2.0.a1 Prupe.5G203200_v2.0.a1
pyrus_communis	pycom14g17350
rosa_chinensis	RchiOBHm_Chr4g0399591 RchiOBHm_Chr7g0182741
rosa_laevigata	RLG00000005104 RLG00000009260
rosa_multiflora	Rmu_sc0000014.1_g000033 Rmu_sc0002285.1_g000036 Rmu_sc0024464.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271020 Rroxscaffold_5G00344500
rosa_rugosa	Rorug04G0017500 Rorug06G0449800
rosa_samantha	Rh4AG095400 Rh4BG092800 Rh4CG103900 Rh4DG087800 Rh7AG053600 Rh7BG053100 Rh7CG054700 Rh7DG052900
rosa_wichuraiana	Rw4G007850 Rw7G004360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	285
AciI	CCGC	2 cut(s)	407, 471
AclWI	GGATC	3 cut(s)	13, 406, 566
AcsI	RAATTY	1 cut(s)	308
AfaI	GTAC	1 cut(s)	123
AfiI	CCNNNNNNNGG	2 cut(s)	332, 413
AgsI	TTSAA	2 cut(s)	467, 548
AluBI	AGCT	5 cut(s)	30, 79, 107, 119, 362
AluI	AGCT	5 cut(s)	30, 79, 107, 119, 362
Alw21I	GWGCWC	2 cut(s)	32, 364
Alw26I	GTCTC	1 cut(s)	457
AlwI	GGATC	3 cut(s)	13, 406, 566
AlwNI	CAGNNNCTG	1 cut(s)	131
ApeKI	GCWGC	2 cut(s)	252, 255
ApoI	RAATTY	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	492
AsuC2I	CCSGG	1 cut(s)	333
AvaII	GGWCC	1 cut(s)	492
BamHI	GGATCC	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	32, 364
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	2 cut(s)	32, 364
BbvI	GCAGC	2 cut(s)	264, 267
BccI	CCATC	2 cut(s)	183, 197
BceAI	ACGGC	3 cut(s)	394, 455, 542
BcnI	CCSGG	1 cut(s)	333
BcoDI	GTCTC	1 cut(s)	457
BfaI	CTAG	1 cut(s)	188
BisI	GCNGC	2 cut(s)	253, 256
BlsI	GCNGC	2 cut(s)	254, 257
Bme1390I	CCNGG	1 cut(s)	333
Bme18I	GGWCC	1 cut(s)	492
BmgT120I	GGNCC	1 cut(s)	492
BmiI	GGNNCC	2 cut(s)	7, 494
BmrFI	CCNGG	1 cut(s)	333
BmsI	GCATC	2 cut(s)	124, 142
BpiI	GAAGAC	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	333
Bsa29I	ATCGAT	2 cut(s)	150, 570
BsaWI	WCCGGW	1 cut(s)	499
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 413
Bse1I	ACTGG	2 cut(s)	44, 125
BseCI	ATCGAT	2 cut(s)	150, 570
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	2 cut(s)	332, 413
BseMII	CTCAG	2 cut(s)	468, 565
BseNI	ACTGG	2 cut(s)	44, 125
BseXI	GCAGC	2 cut(s)	264, 267
BsgI	GTGCAG	1 cut(s)	495
Bsh1236I	CGCG	1 cut(s)	285
Bsh1285I	CGRYCG	2 cut(s)	500, 570
BshVI	ATCGAT	2 cut(s)	150, 570
BsiEI	CGRYCG	2 cut(s)	500, 570
BsiHKAI	GWGCWC	2 cut(s)	32, 364
BsiSI	CCGG	4 cut(s)	333, 355, 375, 500
BslFI	GGGAC	1 cut(s)	405
BslI	CCNNNNNNNGG	2 cut(s)	332, 413
BsmAI	GTCTC	1 cut(s)	457
BsmBI	CGTCTC	1 cut(s)	457
BsmFI	GGGAC	1 cut(s)	405
Bsp1286I	GDGCHC	2 cut(s)	32, 364
Bsp143I	GATC	5 cut(s)	5, 147, 398, 567, 571
Bsp68I	TCGCGA	1 cut(s)	285
BspACI	CCGC	2 cut(s)	407, 471
BspCNI	CTCAG	2 cut(s)	467, 564
BspDI	ATCGAT	2 cut(s)	150, 570
BspFNI	CGCG	1 cut(s)	285
BspHI	TCATGA	1 cut(s)	232
BspLI	GGNNCC	2 cut(s)	7, 494
BspPI	GGATC	3 cut(s)	13, 406, 566
BspQI	GCTCTTC	1 cut(s)	69
BsrI	ACTGG	2 cut(s)	44, 125
BssMI	GATC	5 cut(s)	5, 147, 398, 567, 571
Bst4CI	ACNGT	2 cut(s)	280, 511
Bst6I	CTCTTC	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	2 cut(s)	454, 551
BstF5I	GGATG	1 cut(s)	175
BstFNI	CGCG	1 cut(s)	285
BstKTI	GATC	5 cut(s)	8, 150, 401, 570, 574
BstMAI	GTCTC	1 cut(s)	457
BstMBI	GATC	5 cut(s)	5, 147, 398, 567, 571
BstMCI	CGRYCG	2 cut(s)	500, 570
BstSCI	CCNGG	1 cut(s)	331
BstUI	CGCG	1 cut(s)	285
BstV1I	GCAGC	2 cut(s)	264, 267
BstV2I	GAAGAC	1 cut(s)	243
BstX2I	RGATCY	1 cut(s)	5
BstYI	RGATCY	1 cut(s)	5
Bsu15I	ATCGAT	2 cut(s)	150, 570
BsuTUI	ATCGAT	2 cut(s)	150, 570
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	462
BtuMI	TCGCGA	1 cut(s)	285
Cac8I	GCNNGC	1 cut(s)	360
CaiI	CAGNNNCTG	1 cut(s)	131
CciI	TCATGA	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	492
ClaI	ATCGAT	2 cut(s)	150, 570
Csp6I	GTAC	1 cut(s)	122
CviAII	CATG	2 cut(s)	233, 260
CviJI	RGCY	8 cut(s)	30, 79, 107, 119, 258, 362, 529, 560
CviKI_1	RGCY	8 cut(s)	30, 79, 107, 119, 258, 362, 529, 560
CviQI	GTAC	1 cut(s)	122
DdeI	CTNAG	2 cut(s)	454, 551
DpnI	GATC	5 cut(s)	7, 149, 400, 569, 573
DpnII	GATC	5 cut(s)	5, 147, 398, 567, 571
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
EciI	GGCGGA	1 cut(s)	396
Ecl136II	GAGCTC	2 cut(s)	30, 362
Eco24I	GRGCYC	2 cut(s)	32, 364
Eco47I	GGWCC	1 cut(s)	492
Eco53kI	GAGCTC	2 cut(s)	30, 362
EcoICRI	GAGCTC	2 cut(s)	30, 362
EcoT38I	GRGCYC	2 cut(s)	32, 364
Esp3I	CGTCTC	1 cut(s)	457
FaeI	CATG	2 cut(s)	236, 263
FaiI	YATR	4 cut(s)	62, 234, 261, 341
FaqI	GGGAC	1 cut(s)	405
FatI	CATG	2 cut(s)	232, 259
Fnu4HI	GCNGC	2 cut(s)	253, 256
FokI	GGATG	1 cut(s)	162
FriOI	GRGCYC	2 cut(s)	32, 364
Fsp4HI	GCNGC	2 cut(s)	253, 256
FspBI	CTAG	1 cut(s)	188
GluI	GCNGC	2 cut(s)	253, 256
HapII	CCGG	4 cut(s)	333, 355, 375, 500
Hin1II	CATG	2 cut(s)	236, 263
HindIII	AAGCTT	1 cut(s)	105
HinfI	GANTC	4 cut(s)	139, 157, 184, 444
HpaII	CCGG	4 cut(s)	333, 355, 375, 500
Hpy188I	TCNGA	6 cut(s)	34, 202, 293, 492, 516, 554
Hpy188III	TCNNGA	5 cut(s)	114, 143, 233, 284, 391
HpyCH4III	ACNGT	2 cut(s)	280, 511
HpyCH4IV	ACGT	1 cut(s)	194
HpyCH4V	TGCA	2 cut(s)	252, 476
HpyF3I	CTNAG	2 cut(s)	454, 551
HpySE526I	ACGT	1 cut(s)	194
Hsp92II	CATG	2 cut(s)	236, 263
Kzo9I	GATC	5 cut(s)	5, 147, 398, 567, 571
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	367
Lsp1109I	GCAGC	2 cut(s)	264, 267
LweI	GCATC	2 cut(s)	124, 142
MaeI	CTAG	1 cut(s)	188
MaeII	ACGT	1 cut(s)	194
MaeIII	GTNAC	2 cut(s)	82, 190
MalI	GATC	5 cut(s)	7, 149, 400, 569, 573
MboI	GATC	5 cut(s)	5, 147, 398, 567, 571
MboII	GAAGA	3 cut(s)	86, 214, 248
MflI	RGATCY	1 cut(s)	5
MhlI	GDGCHC	2 cut(s)	32, 364
MluCI	AATT	2 cut(s)	308, 336
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	2 cut(s)	271, 539
MnlI	CCTC	5 cut(s)	204, 382, 414, 433, 571
MspI	CCGG	4 cut(s)	333, 355, 375, 500
MspR9I	CCNGG	1 cut(s)	333
MvnI	CGCG	1 cut(s)	285
NciI	CCSGG	1 cut(s)	333
NdeII	GATC	5 cut(s)	5, 147, 398, 567, 571
NlaIII	CATG	2 cut(s)	236, 263
NlaIV	GGNNCC	2 cut(s)	7, 494
NmuCI	GTSAC	2 cut(s)	82, 190
NruI	TCGCGA	1 cut(s)	285
PagI	TCATGA	1 cut(s)	232
PciSI	GCTCTTC	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	2 cut(s)	319, 407
PfeI	GAWTC	3 cut(s)	139, 184, 444
PkrI	GCNGC	2 cut(s)	254, 257
Ple19I	CGATCG	1 cut(s)	570
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
Psp124BI	GAGCTC	2 cut(s)	32, 364
PspN4I	GGNNCC	2 cut(s)	7, 494
PspPI	GGNCC	1 cut(s)	492
PstNI	CAGNNNCTG	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	5
PvuI	CGATCG	1 cut(s)	570
RruI	TCGCGA	1 cut(s)	285
RsaI	GTAC	1 cut(s)	123
RsaNI	GTAC	1 cut(s)	122
SacI	GAGCTC	2 cut(s)	32, 364
SapI	GCTCTTC	1 cut(s)	69
SatI	GCNGC	2 cut(s)	253, 256
Sau3AI	GATC	5 cut(s)	5, 147, 398, 567, 571
Sau96I	GGNCC	1 cut(s)	492
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	333
SduI	GDGCHC	2 cut(s)	32, 364
SetI	ASST	8 cut(s)	32, 59, 81, 109, 121, 197, 364, 374
SfaNI	GCATC	2 cut(s)	124, 142
SinI	GGWCC	1 cut(s)	492
Sse9I	AATT	2 cut(s)	308, 336
SsiI	CCGC	2 cut(s)	407, 471
SspMI	CTAG	1 cut(s)	188
SstI	GAGCTC	2 cut(s)	32, 364
StyD4I	CCNGG	1 cut(s)	331
TaaI	ACNGT	2 cut(s)	280, 511
TaiI	ACGT	1 cut(s)	197
TaqI	TCGA	4 cut(s)	150, 313, 532, 570
TasI	AATT	2 cut(s)	308, 336
TfiI	GAWTC	3 cut(s)	139, 184, 444
TscAI	CASTG	1 cut(s)	462
TseFI	GTSAC	2 cut(s)	82, 190
TseI	GCWGC	2 cut(s)	252, 255
Tsp45I	GTSAC	2 cut(s)	82, 190
TspDTI	ATGAA	5 cut(s)	87, 113, 221, 249, 258
TspGWI	ACGGA	1 cut(s)	439
TspRI	CASTG	1 cut(s)	462
VpaK11BI	GGWCC	1 cut(s)	492
XapI	RAATTY	1 cut(s)	308
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.