Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006410

Physical Location & Seq

Genomic Coordinates Reverse (-)

57964890 .. 57966290

Gene Structure 1401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0449800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGATAGCGCCAACATAGTAACCGTCCTGGAATCCGAAGGAGTTGAGTTCCTTCTATCTGGTGAAAGAAAGGTACCCTTGTCATCATGCAATGGGAAGACAGTATGCCTCCTCTTCTCTGCAAATTGGTGTAGGCCTTGCAAGGCTCTGACTCCTCAGCTTGTGAGACTTTATGATACCCTTAGATATGATGGCAAAGATCTTGAGATTATTTTGGTCTCCTTCGACCGCGATGAGGACAAATTCAATGAACACTTCAAGTGCATGCCATGGCTGGCAGTTCCATTCGATGTAAACCTGCACAAAAGATTGAGTGACATATACCATGTTGATCGGATTCCATCACTTGTTCCGTTGAGTTCAGATGGGATATCAATTGAGGAAGATTTGATTGGACTTATTGAAGACTATGGTGCCGAGGCATTTCCTTTCACTAGGAAGAGAAGAGAGGAATTAAGGGCAATAGATGATGCAAAGCGTGATGGTGGAAAACTTGAAGAGCTTCTGGCACATCAAGGAAGAAACTTTCTCATGTCTAGGGATGGTAGAGAGATATCAGTATCCGAACTTGTTGGCAAAACCATAGGCCTTTACTTTGGTGCACACTGGAGTCCTCCTTGCCGCGCTTTCACTTCCAAGCTCATAGAAGCGTACAGTGAGCTTCTGACATCCAATGATGAATTCTTTGAAATCATTTTCGTCTCCACAGATCGAGACCTCAAAGAATTCGAACTAAACATATGCAACATGCCATGGCTTGCCATCCCCTACCATGATAAAACAAGACAAGACCTTTGCCGAATCTTTAACATTAAAGAGATTCCGGCTTTGGTTCTAATTGGACCAGATGGGAAGGCTGTTAGCACAAAGGGGAGGGCTTTGATCTCTTTGTATGGCGCAAAATCTTTTCCATTTACAGAGTTGAGGATCAAAGAGCTTGAAGCAGCCTTGGGAAAAGAAGGAGAGGCATTGCCTCCTCAAGTGAAGGATATAAAACATGACCATATGCTGAAGTTGGACATGGCCAAAGCATATGTATGTGATTTTTGCAAGAAGCAAGGGAGGTTCTGGGCATTTTCGTGTGATGTTTGTGACTATGACCTTCATCCAACTTGCGTAGATAAGTCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

377

Amino Acids

42.92

Weight (kDa)

5.43

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	23 - 91	2.4e-06	AhpC/TSA family
Thioredoxin_8	PF13905	32 - 123	1.2e-21	Thioredoxin-like
Thioredoxin_8	PF13905	192 - 285	2.1e-25	Thioredoxin-like
C1_2	PF03107	332 - 373	1.6e-08	C1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006410)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14080 FvH4_5g14170
malus_domestica	MD14G1210000.v1.1
prunus_persica	Prupe.1G234600_v2.0.a1 Prupe.5G203200_v2.0.a1
pyrus_communis	pycom14g17350
rosa_chinensis	RchiOBHm_Chr4g0399591 RchiOBHm_Chr7g0182741
rosa_laevigata	RLG00000005104 RLG00000009260
rosa_multiflora	Rmu_sc0000014.1_g000033 Rmu_sc0002285.1_g000036 Rmu_sc0024464.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271020 Rroxscaffold_5G00344500
rosa_rugosa	Rorug04G0017500 Rorug06G0449800
rosa_samantha	Rh4AG095400 Rh4BG092800 Rh4CG103900 Rh4DG087800 Rh7AG053600 Rh7BG053100 Rh7CG054700 Rh7DG052900
rosa_wichuraiana	Rw4G007850 Rw7G004360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	306
Acc65I	GGTACC	1 cut(s)	73
AccB1I	GGYRCC	2 cut(s)	73, 413
AccII	CGCG	2 cut(s)	231, 624
AciI	CCGC	2 cut(s)	229, 622
AclWI	GGATC	1 cut(s)	935
AcoI	YGGCCR	1 cut(s)	1023
AcsI	RAATTY	3 cut(s)	242, 680, 725
AcuI	CTGAAG	1 cut(s)	1031
AfaI	GTAC	2 cut(s)	75, 653
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	6 cut(s)	247, 259, 404, 497, 689, 941
AjnI	CCWGG	1 cut(s)	27
AjuI	GAANNNNNNNTTGG	4 cut(s)	375, 407, 665, 697
AluBI	AGCT	5 cut(s)	160, 502, 640, 661, 937
AluI	AGCT	5 cut(s)	160, 502, 640, 661, 937
Alw21I	GWGCWC	1 cut(s)	604
Alw26I	GTCTC	4 cut(s)	160, 223, 706, 708
Alw44I	GTGCAC	1 cut(s)	600
AlwI	GGATC	1 cut(s)	935
AoxI	GGCC	3 cut(s)	134, 586, 1023
ApaLI	GTGCAC	1 cut(s)	600
ApeKI	GCWGC	1 cut(s)	944
ApoI	RAATTY	3 cut(s)	242, 680, 725
ArsI	GACNNNNNNTTYG	2 cut(s)	777, 809
Asp700I	GAANNNNTTC	1 cut(s)	501
Asp718I	GGTACC	1 cut(s)	73
AspLEI	GCGC	3 cut(s)	11, 626, 899
AspS9I	GGNCC	1 cut(s)	842
AsuHPI	GGTGA	1 cut(s)	74
AsuII	TTCGAA	1 cut(s)	729
AvaII	GGWCC	1 cut(s)	842
BaeGI	GKGCMC	1 cut(s)	604
BaeI	ACNNNNGTAYC	2 cut(s)	65, 98
BalI	TGGCCA	1 cut(s)	1025
BanI	GGYRCC	2 cut(s)	73, 413
BbsI	GAAGAC	2 cut(s)	104, 411
Bbv12I	GWGCWC	1 cut(s)	604
BbvCI	CCTCAGC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	956
BccI	CCATC	7 cut(s)	185, 349, 359, 476, 536, 770, 842
BciT130I	CCWGG	1 cut(s)	29
BciVI	GTATCC	1 cut(s)	571
BcoDI	GTCTC	4 cut(s)	160, 223, 706, 708
BfaI	CTAG	2 cut(s)	435, 537
BfoI	RGCGCY	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	306
BfuI	GTATCC	1 cut(s)	571
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	2 cut(s)	622, 945
BlsI	GCNGC	2 cut(s)	623, 946
Bme1390I	CCNGG	1 cut(s)	29
Bme18I	GGWCC	1 cut(s)	842
BmgT120I	GGNCC	1 cut(s)	842
BmiI	GGNNCC	2 cut(s)	75, 415
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	460
BpiI	GAAGAC	2 cut(s)	104, 411
BpmI	CTGGAG	1 cut(s)	628
Bpu10I	CCTNAGC	1 cut(s)	156
Bpu14I	TTCGAA	1 cut(s)	729
BpuEI	CTTGAG	2 cut(s)	224, 963
BsaI	GGTCTC	2 cut(s)	223, 708
BsaJI	CCNNGG	4 cut(s)	269, 417, 752, 948
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	611
Bse3DI	GCAATG	2 cut(s)	97, 968
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	4 cut(s)	269, 417, 752, 948
BseGI	GGATG	4 cut(s)	547, 668, 762, 1105
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMI	GCAATG	2 cut(s)	97, 968
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	1 cut(s)	611
BseRI	GAGGAG	3 cut(s)	101, 144, 966
BseSI	GKGCMC	1 cut(s)	604
BseXI	GCAGC	1 cut(s)	956
BsgI	GTGCAG	1 cut(s)	284
Bsh1236I	CGCG	2 cut(s)	231, 624
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	3 cut(s)	136, 588, 1025
BshNI	GGYRCC	2 cut(s)	73, 413
BsiEI	CGRYCG	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	604
BsiSI	CCGG	1 cut(s)	824
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	4 cut(s)	160, 223, 706, 708
BsmBI	CGTCTC	1 cut(s)	706
BsnI	GGCC	3 cut(s)	136, 588, 1025
Bso31I	GGTCTC	2 cut(s)	223, 708
Bsp119I	TTCGAA	1 cut(s)	729
Bsp1286I	GDGCHC	1 cut(s)	604
Bsp143I	GATC	5 cut(s)	199, 331, 709, 882, 927
Bsp19I	CCATGG	2 cut(s)	269, 752
BspACI	CCGC	2 cut(s)	229, 622
BspANI	GGCC	3 cut(s)	136, 588, 1025
BspCNI	CTCAG	1 cut(s)	169
BspFNI	CGCG	2 cut(s)	231, 624
BspLI	GGNNCC	2 cut(s)	75, 415
BspMI	ACCTGC	1 cut(s)	306
BspPI	GGATC	1 cut(s)	935
BspQI	GCTCTTC	1 cut(s)	492
BspT104I	TTCGAA	1 cut(s)	729
BspT107I	GGYRCC	2 cut(s)	73, 413
BspTNI	GGTCTC	2 cut(s)	223, 708
BsrDI	GCAATG	2 cut(s)	97, 968
BsrI	ACTGG	1 cut(s)	611
BssECI	CCNNGG	4 cut(s)	269, 417, 752, 948
BssMI	GATC	5 cut(s)	199, 331, 709, 882, 927
BssT1I	CCWWGG	3 cut(s)	269, 752, 948
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	3 cut(s)	25, 103, 656
Bst6I	CTCTTC	4 cut(s)	119, 434, 439, 492
BstBI	TTCGAA	1 cut(s)	729
BstC8I	GCNNGC	3 cut(s)	266, 276, 759
BstDEI	CTNAG	2 cut(s)	156, 182
BstDSI	CCRYGG	2 cut(s)	269, 752
BstF5I	GGATG	4 cut(s)	547, 668, 762, 1105
BstFNI	CGCG	2 cut(s)	231, 624
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	3 cut(s)	11, 626, 899
BstKTI	GATC	5 cut(s)	202, 334, 712, 885, 930
BstMAI	GTCTC	4 cut(s)	160, 223, 706, 708
BstMBI	GATC	5 cut(s)	199, 331, 709, 882, 927
BstMCI	CGRYCG	1 cut(s)	229
BstNI	CCWGG	1 cut(s)	29
BstNSI	RCATGY	2 cut(s)	268, 751
BstSCI	CCNGG	1 cut(s)	27
BstSLI	GKGCMC	1 cut(s)	604
BstUI	CGCG	2 cut(s)	231, 624
BstV1I	GCAGC	1 cut(s)	956
BstV2I	GAAGAC	2 cut(s)	104, 411
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuI	GTATCC	1 cut(s)	571
BsuRI	GGCC	3 cut(s)	136, 588, 1025
BtgI	CCRYGG	2 cut(s)	269, 752
BtgZI	GCGATG	1 cut(s)	246
BtsCI	GGATG	4 cut(s)	547, 668, 762, 1105
BtsIMutI	CAGTG	2 cut(s)	604, 661
BveI	ACCTGC	1 cut(s)	306
Cac8I	GCNNGC	3 cut(s)	266, 276, 759
CfoI	GCGC	3 cut(s)	11, 626, 899
Cfr13I	GGNCC	1 cut(s)	842
Csp6I	GTAC	2 cut(s)	74, 652
CviQI	GTAC	2 cut(s)	74, 652
DdeI	CTNAG	2 cut(s)	156, 182
DpnI	GATC	5 cut(s)	201, 333, 711, 884, 929
DpnII	GATC	5 cut(s)	199, 331, 709, 882, 927
EaeI	YGGCCR	1 cut(s)	1023
Eam1104I	CTCTTC	4 cut(s)	119, 434, 439, 492
EarI	CTCTTC	4 cut(s)	119, 434, 439, 492
Eco130I	CCWWGG	3 cut(s)	269, 752, 948
Eco147I	AGGCCT	2 cut(s)	136, 588
Eco31I	GGTCTC	2 cut(s)	223, 708
Eco32I	GATATC	2 cut(s)	372, 555
Eco47I	GGWCC	1 cut(s)	842
Eco57I	CTGAAG	1 cut(s)	1031
EcoRI	GAATTC	2 cut(s)	680, 725
EcoRII	CCWGG	1 cut(s)	27
EcoRV	GATATC	2 cut(s)	372, 555
EcoT14I	CCWWGG	3 cut(s)	269, 752, 948
ErhI	CCWWGG	3 cut(s)	269, 752, 948
Esp3I	CGTCTC	1 cut(s)	706
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FauNDI	CATATG	3 cut(s)	740, 1005, 1033
Fnu4HI	GCNGC	2 cut(s)	622, 945
FokI	GGATG	4 cut(s)	554, 655, 749, 1092
Fsp4HI	GCNGC	2 cut(s)	622, 945
FspBI	CTAG	2 cut(s)	435, 537
GlaI	GCGC	3 cut(s)	10, 625, 898
GluI	GCNGC	2 cut(s)	622, 945
GsuI	CTGGAG	1 cut(s)	628
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	3 cut(s)	136, 588, 1025
HapII	CCGG	1 cut(s)	824
HhaI	GCGC	3 cut(s)	11, 626, 899
Hin6I	GCGC	3 cut(s)	9, 624, 897
HinP1I	GCGC	3 cut(s)	9, 624, 897
HinfI	GANTC	6 cut(s)	32, 151, 337, 610, 801, 820
HpaII	CCGG	1 cut(s)	824
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	2 cut(s)	295, 602
Hpy188I	TCNGA	6 cut(s)	37, 150, 336, 364, 565, 666
Hpy188III	TCNNGA	2 cut(s)	203, 713
Hpy8I	GTNNAC	2 cut(s)	295, 602
HpyAV	CCTTC	7 cut(s)	32, 62, 232, 847, 953, 979, 1112
HpyCH4III	ACNGT	3 cut(s)	25, 103, 656
HpyCH4V	TGCA	9 cut(s)	90, 122, 141, 264, 301, 473, 602, 744, 1050
HpyF3I	CTNAG	2 cut(s)	156, 182
HspAI	GCGC	3 cut(s)	9, 624, 897
KpnI	GGTACC	1 cut(s)	77
Kzo9I	GATC	5 cut(s)	199, 331, 709, 882, 927
LguI	GCTCTTC	1 cut(s)	492
Lsp1109I	GCAGC	1 cut(s)	956
LweI	GCATC	1 cut(s)	460
MaeI	CTAG	2 cut(s)	435, 537
MaeIII	GTNAC	3 cut(s)	19, 314, 1091
MalI	GATC	5 cut(s)	201, 333, 711, 884, 929
MboI	GATC	5 cut(s)	199, 331, 709, 882, 927
MboII	GAAGA	8 cut(s)	106, 109, 395, 416, 451, 456, 509, 531
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	604
MlsI	TGGCCA	1 cut(s)	1025
MluCI	AATT	7 cut(s)	124, 242, 375, 452, 680, 725, 837
MluNI	TGGCCA	1 cut(s)	1025
MlyI	GAGTC	2 cut(s)	145, 619
MmeI	TCCRAC	2 cut(s)	996, 1133
Mox20I	TGGCCA	1 cut(s)	1025
MroXI	GAANNNNTTC	1 cut(s)	501
MscI	TGGCCA	1 cut(s)	1025
MseI	TTAA	4 cut(s)	455, 807, 813, 1132
MslI	CAYNNNNRTG	2 cut(s)	1036, 1078
Msp20I	TGGCCA	1 cut(s)	1025
MspI	CCGG	1 cut(s)	824
MspR9I	CCNGG	1 cut(s)	29
MunI	CAATTG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	29
MvnI	CGCG	2 cut(s)	231, 624
NcoI	CCATGG	2 cut(s)	269, 752
NdeI	CATATG	3 cut(s)	740, 1005, 1033
NdeII	GATC	5 cut(s)	199, 331, 709, 882, 927
NlaIV	GGNNCC	2 cut(s)	75, 415
NmeAIII	GCCGAG	1 cut(s)	442
NmuCI	GTSAC	2 cut(s)	314, 1091
NspI	RCATGY	2 cut(s)	268, 751
NspV	TTCGAA	1 cut(s)	729
PaeI	GCATGC	1 cut(s)	268
PceI	AGGCCT	2 cut(s)	136, 588
PciSI	GCTCTTC	1 cut(s)	492
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	4 cut(s)	32, 337, 801, 820
PfoI	TCCNGGA	1 cut(s)	27
PkrI	GCNGC	2 cut(s)	623, 946
PleI	GAGTC	2 cut(s)	145, 618
PpsI	GAGTC	2 cut(s)	145, 618
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	75, 415
PspPI	GGNCC	1 cut(s)	842
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	2 cut(s)	75, 653
RsaNI	GTAC	2 cut(s)	74, 652
RseI	CAYNNNNRTG	2 cut(s)	1036, 1078
SapI	GCTCTTC	1 cut(s)	492
SaqAI	TTAA	4 cut(s)	455, 807, 813, 1132
SatI	GCNGC	2 cut(s)	622, 945
Sau3AI	GATC	5 cut(s)	199, 331, 709, 882, 927
Sau96I	GGNCC	1 cut(s)	842
SchI	GAGTC	2 cut(s)	145, 619
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	604
SfaNI	GCATC	1 cut(s)	460
SfuI	TTCGAA	1 cut(s)	729
SinI	GGWCC	1 cut(s)	842
SmiMI	CAYNNNNRTG	2 cut(s)	1036, 1078
SmlI	CTYRAG	2 cut(s)	203, 978
SmoI	CTYRAG	2 cut(s)	203, 978
SphI	GCATGC	1 cut(s)	268
Sse9I	AATT	7 cut(s)	124, 242, 375, 452, 680, 725, 837
SseBI	AGGCCT	2 cut(s)	136, 588
SsiI	CCGC	2 cut(s)	229, 622
SspMI	CTAG	2 cut(s)	435, 537
StuI	AGGCCT	2 cut(s)	136, 588
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	3 cut(s)	269, 752, 948
TaaI	ACNGT	3 cut(s)	25, 103, 656
TaqI	TCGA	4 cut(s)	225, 288, 712, 729
TasI	AATT	7 cut(s)	124, 242, 375, 452, 680, 725, 837
TauI	GCSGC	1 cut(s)	624
TfiI	GAWTC	4 cut(s)	32, 337, 801, 820
Tru1I	TTAA	4 cut(s)	455, 807, 813, 1132
Tru9I	TTAA	4 cut(s)	455, 807, 813, 1132
TscAI	CASTG	2 cut(s)	611, 661
TseFI	GTSAC	2 cut(s)	314, 1091
TseI	GCWGC	1 cut(s)	944
Tsp45I	GTSAC	2 cut(s)	314, 1091
TspDTI	ATGAA	3 cut(s)	264, 693, 1094
TspGWI	ACGGA	1 cut(s)	342
TspRI	CASTG	2 cut(s)	611, 661
VneI	GTGCAC	1 cut(s)	600
VpaK11BI	GGWCC	1 cut(s)	842
XapI	RAATTY	3 cut(s)	242, 680, 725
XceI	RCATGY	2 cut(s)	268, 751
XmnI	GAANNNNTTC	1 cut(s)	501
XspI	CTAG	2 cut(s)	435, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.