Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000014.1

Orthogroup ID

OG0006410

Physical Location & Seq

Genomic Coordinates Reverse (-)

183615 .. 184875

Gene Structure 1261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000014.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atggaatcccagaaagtagtagtgagctctaatttgcttccagttgggtttaggtttatgccaacagatgaagagctggtcagtcactatctaatgaacaaagcttgttccagatctgtaccagttgctgatgcgattcaggagatcaatgcgactcggttttacagcaaccatccaaagagtctagtgacgttctctgatggagagagggactggttcttctttattcatgaagacaatgacagttgcagcagccatgcccagagaaaaagaaatgttcgagaagtcggaaacgggctagggttttggaaaccgaacggatcagaaaacccgatctacaatgaagatggaaatgtctttgcgaccaagatctacctcacttacttctccggaagttgtcactccaataaaccaaagagaacccactggaaaatggtcgagtaccatttacagataagaagagaatgggtagtgctgggaagattacaaagaggaatggattacactggtttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

171

Amino Acids

19.86

Weight (kDa)

8.43

Isoelectric Point (pI)

54.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006410)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14080 FvH4_5g14170
malus_domestica	MD14G1210000.v1.1
prunus_persica	Prupe.1G234600_v2.0.a1 Prupe.5G203200_v2.0.a1
pyrus_communis	pycom14g17350
rosa_chinensis	RchiOBHm_Chr4g0399591 RchiOBHm_Chr7g0182741
rosa_laevigata	RLG00000005104 RLG00000009260
rosa_multiflora	Rmu_sc0000014.1_g000033 Rmu_sc0002285.1_g000036 Rmu_sc0024464.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271020 Rroxscaffold_5G00344500
rosa_rugosa	Rorug04G0017500 Rorug06G0449800
rosa_samantha	Rh4AG095400 Rh4BG092800 Rh4CG103900 Rh4DG087800 Rh7AG053600 Rh7BG053100 Rh7CG054700 Rh7DG052900
rosa_wichuraiana	Rw4G007850 Rw7G004360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	389
AclWI	GGATC	1 cut(s)	328
AfaI	GTAC	2 cut(s)	120, 443
AluBI	AGCT	3 cut(s)	27, 76, 104
AluI	AGCT	3 cut(s)	27, 76, 104
Alw21I	GWGCWC	1 cut(s)	29
AlwI	GGATC	1 cut(s)	328
AlwNI	CAGNNNCTG	1 cut(s)	128
Aor13HI	TCCGGA	1 cut(s)	389
ApeKI	GCWGC	2 cut(s)	249, 252
BanII	GRGCYC	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	2 cut(s)	261, 264
BccI	CCATC	3 cut(s)	180, 194, 341
BfaI	CTAG	2 cut(s)	185, 299
BglII	AGATCT	2 cut(s)	113, 369
BisI	GCNGC	2 cut(s)	250, 253
BlsI	GCNGC	2 cut(s)	251, 254
BmsI	GCATC	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	389
Bse1I	ACTGG	5 cut(s)	41, 122, 218, 431, 511
BseAI	TCCGGA	1 cut(s)	389
BseGI	GGATG	1 cut(s)	172
BseNI	ACTGG	5 cut(s)	41, 122, 218, 431, 511
BseXI	GCAGC	2 cut(s)	261, 264
BseYI	CCCAGC	1 cut(s)	475
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	390
BslFI	GGGAC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp13I	TCCGGA	1 cut(s)	389
Bsp143I	GATC	5 cut(s)	113, 144, 320, 333, 369
BspEI	TCCGGA	1 cut(s)	389
BspHI	TCATGA	1 cut(s)	229
BspPI	GGATC	1 cut(s)	328
BspQI	GCTCTTC	1 cut(s)	66
BsrI	ACTGG	5 cut(s)	41, 122, 218, 431, 511
BssMI	GATC	5 cut(s)	113, 144, 320, 333, 369
Bst4CI	ACNGT	1 cut(s)	245
Bst6I	CTCTTC	2 cut(s)	66, 454
BstF5I	GGATG	1 cut(s)	172
BstKTI	GATC	5 cut(s)	116, 147, 323, 336, 372
BstMBI	GATC	5 cut(s)	113, 144, 320, 333, 369
BstV1I	GCAGC	2 cut(s)	261, 264
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	2 cut(s)	113, 369
BstYI	RGATCY	2 cut(s)	113, 369
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	2 cut(s)	424, 504
CaiI	CAGNNNCTG	1 cut(s)	128
CciI	TCATGA	1 cut(s)	229
Csp6I	GTAC	2 cut(s)	119, 442
CviAII	CATG	2 cut(s)	230, 257
CviJI	RGCY	5 cut(s)	27, 76, 104, 255, 298
CviKI_1	RGCY	5 cut(s)	27, 76, 104, 255, 298
CviQI	GTAC	2 cut(s)	119, 442
DpnI	GATC	5 cut(s)	115, 146, 322, 335, 371
DpnII	GATC	5 cut(s)	113, 144, 320, 333, 369
Eam1104I	CTCTTC	2 cut(s)	66, 454
EarI	CTCTTC	2 cut(s)	66, 454
Ecl136II	GAGCTC	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	29
Eco53kI	GAGCTC	1 cut(s)	27
EcoICRI	GAGCTC	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	29
FaeI	CATG	2 cut(s)	233, 260
FaiI	YATR	3 cut(s)	59, 231, 258
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	2 cut(s)	229, 256
Fnu4HI	GCNGC	2 cut(s)	250, 253
FokI	GGATG	1 cut(s)	159
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	2 cut(s)	250, 253
FspBI	CTAG	2 cut(s)	185, 299
GluI	GCNGC	2 cut(s)	250, 253
GsaI	CCCAGC	1 cut(s)	479
HapII	CCGG	1 cut(s)	390
Hin1II	CATG	2 cut(s)	233, 260
HindIII	AAGCTT	1 cut(s)	102
HinfI	GANTC	4 cut(s)	5, 136, 154, 181
HpaII	CCGG	1 cut(s)	390
Hpy188I	TCNGA	3 cut(s)	199, 290, 325
Hpy188III	TCNNGA	5 cut(s)	111, 140, 230, 281, 390
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	1 cut(s)	249
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	2 cut(s)	233, 260
Kpn2I	TCCGGA	1 cut(s)	389
Kzo9I	GATC	5 cut(s)	113, 144, 320, 333, 369
LguI	GCTCTTC	1 cut(s)	66
Lsp1109I	GCAGC	2 cut(s)	261, 264
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	2 cut(s)	185, 299
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	3 cut(s)	83, 187, 398
MalI	GATC	5 cut(s)	115, 146, 322, 335, 371
MboI	GATC	5 cut(s)	113, 144, 320, 333, 369
MboII	GAAGA	6 cut(s)	83, 211, 245, 356, 471, 492
MflI	RGATCY	2 cut(s)	113, 369
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	1 cut(s)	31
MlyI	GAGTC	2 cut(s)	148, 190
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	3 cut(s)	201, 386, 485
MroI	TCCGGA	1 cut(s)	389
MspI	CCGG	1 cut(s)	390
NdeII	GATC	5 cut(s)	113, 144, 320, 333, 369
NlaIII	CATG	2 cut(s)	233, 260
NmuCI	GTSAC	3 cut(s)	83, 187, 398
PagI	TCATGA	1 cut(s)	229
PciSI	GCTCTTC	1 cut(s)	66
PfeI	GAWTC	2 cut(s)	5, 136
PkrI	GCNGC	2 cut(s)	251, 254
PleI	GAGTC	2 cut(s)	148, 189
PpsI	GAGTC	2 cut(s)	148, 189
Psp124BI	GAGCTC	1 cut(s)	29
PspFI	CCCAGC	1 cut(s)	475
PstNI	CAGNNNCTG	1 cut(s)	128
PsuI	RGATCY	2 cut(s)	113, 369
RsaI	GTAC	2 cut(s)	120, 443
RsaNI	GTAC	2 cut(s)	119, 442
SacI	GAGCTC	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	66
SatI	GCNGC	2 cut(s)	250, 253
Sau3AI	GATC	5 cut(s)	113, 144, 320, 333, 369
SchI	GAGTC	2 cut(s)	148, 190
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	6 cut(s)	29, 56, 78, 106, 194, 378
SfaNI	GCATC	1 cut(s)	121
Sse9I	AATT	1 cut(s)	31
SspMI	CTAG	2 cut(s)	185, 299
SstI	GAGCTC	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	245
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	2 cut(s)	280, 438
TasI	AATT	1 cut(s)	31
TfiI	GAWTC	2 cut(s)	5, 136
TscAI	CASTG	2 cut(s)	431, 511
TseFI	GTSAC	3 cut(s)	83, 187, 398
TseI	GCWGC	2 cut(s)	249, 252
Tsp45I	GTSAC	3 cut(s)	83, 187, 398
TspDTI	ATGAA	5 cut(s)	84, 110, 218, 246, 357
TspGWI	ACGGA	1 cut(s)	333
TspRI	CASTG	2 cut(s)	431, 511
XspI	CTAG	2 cut(s)	185, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.