Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006410

Physical Location & Seq

Genomic Coordinates Forward (+)

2617444 .. 2619260

Gene Structure 1817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0017500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCGATGGAGGCATGGTTCATGGATGAGAGCGATGCAGACCCAAGGCTTCCTCACCATCTGAACCCCAAAGAGTATGTTCCTTTGGACCATTTGGCAGAGCTGGGTGTGCTCTACTGGCACTTGAACCCCAAGGACTATGAGAACGATGAACAACTGCGCCAGATAAGAGAAACCAGGGGATATAATTACATGGATTTGCTTGATATATGCCCGGAGAAATTGGAGAACTATGAGGAGAAGCTGAAGAACTTCTACACTGAGCACATTCATGGTGATGAAGAGATACGTTACTGTTTAGAAGGATGTGGGTACTTTGATGTCCGAGACAAGGATGACCGTTGGATTAGAATCTGGATTAAGGCCGGCGATCTTATCATTTTACCTGCCGGAATTTACCACAGGTTCACCCTGGATACCAGCAACTATATCAAGTTGATGAGGTTGTTTGTGGGAGAGCCTGTGTGGACTGCTTACAATCGACCACAGGAAGAACATCCGGCTAGGAAGGAGTACATTGAGAGCTTCACTAAGAAAGTTGGAGTGGCATTGGAAGCTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

187

Amino Acids

22.44

Weight (kDa)

5.1

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARD	PF03079	5 - 158	1.6e-60	ARD/ARD' family
AraC_binding	PF02311	85 - 146	9.9e-06	AraC-like ligand binding domain
Cupin_2	PF07883	88 - 142	8.3e-08	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006410)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14080 FvH4_5g14170
malus_domestica	MD14G1210000.v1.1
prunus_persica	Prupe.1G234600_v2.0.a1 Prupe.5G203200_v2.0.a1
pyrus_communis	pycom14g17350
rosa_chinensis	RchiOBHm_Chr4g0399591 RchiOBHm_Chr7g0182741
rosa_laevigata	RLG00000005104 RLG00000009260
rosa_multiflora	Rmu_sc0000014.1_g000033 Rmu_sc0002285.1_g000036 Rmu_sc0024464.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271020 Rroxscaffold_5G00344500
rosa_rugosa	Rorug04G0017500 Rorug06G0449800
rosa_samantha	Rh4AG095400 Rh4BG092800 Rh4CG103900 Rh4DG087800 Rh7AG053600 Rh7BG053100 Rh7CG054700 Rh7DG052900
rosa_wichuraiana	Rw4G007850 Rw7G004360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	394
AcsI	RAATTY	1 cut(s)	393
AcuI	CTGAAG	1 cut(s)	266
AfaI	GTAC	2 cut(s)	314, 515
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	1 cut(s)	127
AjnI	CCWGG	2 cut(s)	176, 411
AloI	GAACNNNNNNTCC	1 cut(s)	34
AluBI	AGCT	4 cut(s)	103, 244, 525, 557
AluI	AGCT	4 cut(s)	103, 244, 525, 557
Alw21I	GWGCWC	2 cut(s)	114, 267
Alw26I	GTCTC	1 cut(s)	321
AoxI	GGCC	1 cut(s)	363
ApoI	RAATTY	1 cut(s)	393
Asp700I	GAANNNNTTC	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	162
AspS9I	GGNCC	1 cut(s)	88
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	3 cut(s)	47, 287, 400
AvaII	GGWCC	1 cut(s)	88
BarI	GAAGNNNNNNTAC	2 cut(s)	239, 271
Bbv12I	GWGCWC	2 cut(s)	114, 267
BccI	CCATC	1 cut(s)	66
BciT130I	CCWGG	2 cut(s)	178, 413
BciVI	GTATCC	1 cut(s)	409
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	1 cut(s)	504
BfuAI	ACCTGC	1 cut(s)	394
BfuI	GTATCC	1 cut(s)	409
Bme1390I	CCNGG	3 cut(s)	178, 215, 413
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	88
BmrFI	CCNGG	3 cut(s)	178, 215, 413
BmsI	GCATC	1 cut(s)	25
BpuMI	CCSGG	1 cut(s)	215
BsaBI	GATNNNNATC	1 cut(s)	350
BsaJI	CCNNGG	4 cut(s)	44, 132, 177, 411
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 447, 477
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	1 cut(s)	122
Bse8I	GATNNNNATC	1 cut(s)	350
BseBI	CCWGG	2 cut(s)	178, 413
BseDI	CCNNGG	4 cut(s)	44, 132, 177, 411
BseGI	GGATG	4 cut(s)	31, 311, 340, 496
BseJI	GATNNNNATC	1 cut(s)	350
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	122
BseRI	GAGGAG	1 cut(s)	251
BseYI	CCCAGC	1 cut(s)	103
BshFI	GGCC	1 cut(s)	365
BsiHKAI	GWGCWC	2 cut(s)	114, 267
BsiSI	CCGG	4 cut(s)	215, 366, 390, 500
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	1 cut(s)	321
BsnI	GGCC	1 cut(s)	365
Bsp1286I	GDGCHC	2 cut(s)	114, 267
Bsp143I	GATC	1 cut(s)	370
BspANI	GGCC	1 cut(s)	365
BspCNI	CTCAG	1 cut(s)	253
BspMI	ACCTGC	1 cut(s)	394
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	4 cut(s)	44, 132, 177, 411
BssMI	GATC	1 cut(s)	370
BssT1I	CCWWGG	2 cut(s)	44, 132
Bst2UI	CCWGG	2 cut(s)	178, 413
Bst4CI	ACNGT	2 cut(s)	296, 341
Bst6I	CTCTTC	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	367
BstDEI	CTNAG	2 cut(s)	261, 531
BstF5I	GGATG	4 cut(s)	31, 311, 340, 496
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	1 cut(s)	373
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	370
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 109, 118, 554
BstNI	CCWGG	2 cut(s)	178, 413
BstSCI	CCNGG	3 cut(s)	176, 213, 411
BsuI	GTATCC	1 cut(s)	409
BsuRI	GGCC	1 cut(s)	365
BtgZI	GCGATG	2 cut(s)	20, 48
BtsCI	GGATG	4 cut(s)	31, 311, 340, 496
BtsIMutI	CAGTG	1 cut(s)	258
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	1 cut(s)	367
CfoI	GCGC	1 cut(s)	162
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	1 cut(s)	88
Csp6I	GTAC	2 cut(s)	313, 514
CviAII	CATG	4 cut(s)	15, 22, 193, 272
CviJI	RGCY	8 cut(s)	49, 103, 244, 365, 460, 503, 525, 557
CviKI_1	RGCY	8 cut(s)	49, 103, 244, 365, 460, 503, 525, 557
CviQI	GTAC	2 cut(s)	313, 514
DdeI	CTNAG	2 cut(s)	261, 531
DpnI	GATC	1 cut(s)	372
DpnII	GATC	1 cut(s)	370
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco130I	CCWWGG	2 cut(s)	44, 132
Eco47I	GGWCC	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	176, 411
EcoT14I	CCWWGG	2 cut(s)	44, 132
ErhI	CCWWGG	2 cut(s)	44, 132
FaeI	CATG	4 cut(s)	18, 25, 196, 275
FatI	CATG	4 cut(s)	14, 21, 192, 271
FokI	GGATG	4 cut(s)	38, 318, 347, 483
FspBI	CTAG	1 cut(s)	504
GlaI	GCGC	1 cut(s)	161
GsaI	CCCAGC	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	365
HapII	CCGG	4 cut(s)	215, 366, 390, 500
HhaI	GCGC	1 cut(s)	162
Hin1II	CATG	4 cut(s)	18, 25, 196, 275
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HinfI	GANTC	1 cut(s)	351
HpaII	CCGG	4 cut(s)	215, 366, 390, 500
HphI	GGTGA	3 cut(s)	47, 287, 400
Hpy166II	GTNNAC	2 cut(s)	408, 468
Hpy188I	TCNGA	2 cut(s)	63, 326
Hpy188III	TCNNGA	1 cut(s)	355
Hpy8I	GTNNAC	2 cut(s)	408, 468
HpyAV	CCTTC	2 cut(s)	296, 502
HpyCH4III	ACNGT	2 cut(s)	296, 341
HpyCH4IV	ACGT	1 cut(s)	289
HpyCH4V	TGCA	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 109, 118, 554
HpyF3I	CTNAG	2 cut(s)	261, 531
HpySE526I	ACGT	1 cut(s)	289
Hsp92II	CATG	4 cut(s)	18, 25, 196, 275
HspAI	GCGC	1 cut(s)	160
KroI	GCCGGC	1 cut(s)	365
KroNI	GCCGGC	1 cut(s)	367
Kzo9I	GATC	1 cut(s)	370
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	1 cut(s)	504
MaeII	ACGT	1 cut(s)	289
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	1 cut(s)	372
MboI	GATC	1 cut(s)	370
MboII	GAAGA	3 cut(s)	259, 293, 503
MhlI	GDGCHC	2 cut(s)	114, 267
MluCI	AATT	3 cut(s)	187, 221, 393
MmeI	TCCRAC	2 cut(s)	323, 520
MnlI	CCTC	4 cut(s)	4, 63, 229, 435
MroNI	GCCGGC	1 cut(s)	365
MroXI	GAANNNNTTC	1 cut(s)	251
MseI	TTAA	2 cut(s)	360, 562
MslI	CAYNNNNRTG	2 cut(s)	270, 276
MspI	CCGG	4 cut(s)	215, 366, 390, 500
MspR9I	CCNGG	3 cut(s)	178, 215, 413
MvaI	CCWGG	2 cut(s)	178, 413
MwoI	GCNNNNNNNGC	4 cut(s)	11, 109, 118, 554
NaeI	GCCGGC	1 cut(s)	367
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	1 cut(s)	370
NgoMIV	GCCGGC	1 cut(s)	365
NlaIII	CATG	4 cut(s)	18, 25, 196, 275
PdiI	GCCGGC	1 cut(s)	367
PdmI	GAANNNNTTC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	351
Psp6I	CCWGG	2 cut(s)	176, 411
PspFI	CCCAGC	1 cut(s)	103
PspGI	CCWGG	2 cut(s)	176, 411
PspPI	GGNCC	1 cut(s)	88
RsaI	GTAC	2 cut(s)	314, 515
RsaNI	GTAC	2 cut(s)	313, 514
RseI	CAYNNNNRTG	2 cut(s)	270, 276
SaqAI	TTAA	2 cut(s)	360, 562
Sau3AI	GATC	1 cut(s)	370
Sau96I	GGNCC	1 cut(s)	88
ScrFI	CCNGG	3 cut(s)	178, 215, 413
SduI	GDGCHC	2 cut(s)	114, 267
SetI	ASST	8 cut(s)	105, 246, 292, 388, 407, 446, 527, 559
SfaNI	GCATC	1 cut(s)	25
SinI	GGWCC	1 cut(s)	88
SmiMI	CAYNNNNRTG	2 cut(s)	270, 276
Sse9I	AATT	3 cut(s)	187, 221, 393
SspMI	CTAG	1 cut(s)	504
StyD4I	CCNGG	3 cut(s)	176, 213, 411
StyI	CCWWGG	2 cut(s)	44, 132
TaaI	ACNGT	2 cut(s)	296, 341
TaiI	ACGT	1 cut(s)	292
TaqI	TCGA	1 cut(s)	481
TasI	AATT	3 cut(s)	187, 221, 393
TatI	WGTACW	1 cut(s)	513
TfiI	GAWTC	1 cut(s)	351
Tru1I	TTAA	2 cut(s)	360, 562
Tru9I	TTAA	2 cut(s)	360, 562
TscAI	CASTG	1 cut(s)	265
TspDTI	ATGAA	4 cut(s)	10, 165, 260, 294
TspRI	CASTG	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	88
XapI	RAATTY	1 cut(s)	393
XmnI	GAANNNNTTC	1 cut(s)	251
XspI	CTAG	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.