Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0009382

Physical Location & Seq

Genomic Coordinates Reverse (-)

19701043 .. 19702745

Gene Structure 1703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCAACAAAGTCAGAGAAGTTTTCTGTGGATTTTGTGATGGGGGGAATGGCAGCCTTGGTGTCAAAGAGTGCAGCAGCACCCATTGAGAGAGTGAAGCTTCTGCTGCAGAATCAGGGAGAGATGATAAAAAGAGGGCAGATTAAGAGACCTTATAAGGGTGTTGGTGATTGCTTTACAAGGGTGTTTAGAGAGGAAGGCGTGTTGTCGTTTTGGCGAGGCAACCAGGCCAATGTTATTCGATATTTTCCTACTCAGGCTTTCAACTTTGCATTTAGAGGTTACTTCAAAAGCATCTTTGGCTGCTCAAAAGAGAAAGATGGATACATAAAGTGGTTTGCTGGAAATGTGGCTTCAGGAAGTGCTGCTGGAGCAACTACTTCATTATTTCTATATCATCTGGACTATGCACGTACGCGGCTAGGCACCGATGGGAGGGGGTCTGCAGTTAGTGGTCAACGCCAGTTCAGTGGGATTCTAGATGTTTACAGTAAAACCTTATCAAGTGATGGAATAGTTGGTCTCTATCGAGGATTTGGGGCTTCGATCATTGGAATTACGATGTATCGAGGAATGTACTTCGGGATTTATGACACCATGAAGCCTATTGTTTTGGTTGGTCCTTTGGAGGGGAATTTTTTAGCTAGTTTTTTGCTTGGCTGGAGTGTTACAACAGTCTCTGGGGTCTGCGCCTATCCATTTGATACCGTTCGGCGGAGAATGATGCTAACATCAGGACAACCGTCAAAGTATCGTAACGCCTTGCATGCATTTCGGGAGATTGTTTACCTTGAGGGTTTCACAGCACTGTTTCGAGGAGTTACGGCAAATATGCTTCTAGGGGTCGCTGGAGCTGGGGTACTTGCAGGATATGATCAGCTGCAGCGAATTGCATATAAACGTGGTTATTCTTTTGAGCCGCAGCAAAGAGTTTTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000295 GO:0003006 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009791 GO:0009987 GO:0010154 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022414 GO:0022622 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0042175 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0098656 GO:0098827 GO:0099402 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

314

Amino Acids

34.57

Weight (kDa)

9.93

Isoelectric Point (pI)

19.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	6 - 101	6.1e-23	Mitochondrial carrier protein
Mito_carr	PF00153	113 - 203	1.1e-18	Mitochondrial carrier protein
Mito_carr	PF00153	212 - 300	3e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17400
fragaria_vesca	FvH4_5g13470
malus_domestica	MD06G1204800.v1.1 MD14G1215900.v1.1
prunus_persica	Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1
pyrus_communis	pycom06g18290 pycom14g17870
rosa_chinensis	RchiOBHm_Chr7g0183601
rosa_laevigata	RLG00000005038
rosa_multiflora	Rmu_sc0042401.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270370
rosa_rugosa	Rorug06G0458800
rosa_samantha	Rh7AG059900 Rh7BG059600 Rh7CG061600 Rh7DG060000
rosa_wichuraiana	Rw7G004920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AccB1I	GGYRCC	1 cut(s)	425
AccII	CGCG	1 cut(s)	418
AciI	CCGC	3 cut(s)	418, 715, 920
AcsI	RAATTY	1 cut(s)	634
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	3 cut(s)	415, 578, 861
AfiI	CCNNNNNNNGG	4 cut(s)	158, 435, 629, 714
AgsI	TTSAA	3 cut(s)	265, 289, 937
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	4 cut(s)	100, 644, 854, 880
AluI	AGCT	4 cut(s)	100, 644, 854, 880
Alw26I	GTCTC	3 cut(s)	142, 527, 682
AlwNI	CAGNNNCTG	1 cut(s)	680
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	9 cut(s)	53, 74, 77, 106, 303, 365, 880, 883, 922
ApoI	RAATTY	1 cut(s)	634
AspLEI	GCGC	1 cut(s)	692
AspS9I	GGNCC	1 cut(s)	620
AsuHPI	GGTGA	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	620
BanI	GGYRCC	1 cut(s)	425
BbvI	GCAGC	9 cut(s)	65, 86, 89, 93, 290, 352, 867, 895, 934
BccI	CCATC	4 cut(s)	34, 314, 425, 503
BceAI	ACGGC	1 cut(s)	840
BcgI	CGANNNNNNTGC	2 cut(s)	755, 789
BciT130I	CCWGG	1 cut(s)	227
BciVI	GTATCC	1 cut(s)	317
BclI	TGATCA	1 cut(s)	874
BcoDI	GTCTC	3 cut(s)	142, 527, 682
BfaI	CTAG	4 cut(s)	422, 479, 645, 839
BfmI	CTRYAG	3 cut(s)	107, 444, 881
BfuI	GTATCC	1 cut(s)	317
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	1 cut(s)	620
BmgT120I	GGNCC	1 cut(s)	620
BmiI	GGNNCC	1 cut(s)	427
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	2 cut(s)	303, 714
BoxI	GACNNNNGTC	1 cut(s)	742
BpmI	CTGGAG	3 cut(s)	390, 682, 870
BpuEI	CTTGAG	1 cut(s)	812
BsaAI	YACGTR	1 cut(s)	413
BsaI	GGTCTC	2 cut(s)	142, 527
BsaJI	CCNNGG	1 cut(s)	57
BsaXI	ACNNNNNCTCC	2 cut(s)	843, 873
Bsc4I	CCNNNNNNNGG	4 cut(s)	158, 435, 629, 714
Bse1I	ACTGG	1 cut(s)	463
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	1 cut(s)	57
BseLI	CCNNNNNNNGG	4 cut(s)	158, 435, 629, 714
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	1 cut(s)	463
BseRI	GAGGAG	1 cut(s)	831
BseXI	GCAGC	9 cut(s)	65, 86, 89, 93, 290, 352, 867, 895, 934
BseYI	CCCAGC	1 cut(s)	854
BsgI	GTGCAG	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	418
BshFI	GGCC	1 cut(s)	230
BshNI	GGYRCC	1 cut(s)	425
BsiWI	CGTACG	1 cut(s)	413
BslI	CCNNNNNNNGG	4 cut(s)	158, 435, 629, 714
BsmAI	GTCTC	3 cut(s)	142, 527, 682
BsnI	GGCC	1 cut(s)	230
Bso31I	GGTCTC	2 cut(s)	142, 527
Bsp143I	GATC	2 cut(s)	546, 874
BspACI	CCGC	3 cut(s)	418, 715, 920
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	427
BspMAI	CTGCAG	3 cut(s)	111, 448, 885
BspT107I	GGYRCC	1 cut(s)	425
BspTNI	GGTCTC	2 cut(s)	142, 527
BsrI	ACTGG	1 cut(s)	463
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	2 cut(s)	546, 874
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	5 cut(s)	491, 676, 709, 744, 810
BstBAI	YACGTR	1 cut(s)	413
BstC8I	GCNNGC	1 cut(s)	768
BstDEI	CTNAG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	418
BstHHI	GCGC	1 cut(s)	692
BstKTI	GATC	2 cut(s)	549, 877
BstMAI	GTCTC	3 cut(s)	142, 527, 682
BstMBI	GATC	2 cut(s)	546, 874
BstMWI	GCNNNNNNNGC	4 cut(s)	106, 300, 371, 767
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	770
BstPAI	GACNNNNGTC	1 cut(s)	742
BstSCI	CCNGG	1 cut(s)	225
BstSFI	CTRYAG	3 cut(s)	107, 444, 881
BstUI	CGCG	1 cut(s)	418
BstV1I	GCAGC	9 cut(s)	65, 86, 89, 93, 290, 352, 867, 895, 934
BstXI	CCANNNNNNTGG	1 cut(s)	470
BsuI	GTATCC	1 cut(s)	317
BsuRI	GGCC	1 cut(s)	230
BtsIMutI	CAGTG	2 cut(s)	475, 806
Cac8I	GCNNGC	1 cut(s)	768
CaiI	CAGNNNCTG	1 cut(s)	680
CfoI	GCGC	1 cut(s)	692
Cfr13I	GGNCC	1 cut(s)	620
Csp6I	GTAC	3 cut(s)	414, 577, 860
CviAII	CATG	2 cut(s)	598, 767
CviQI	GTAC	3 cut(s)	414, 577, 860
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	2 cut(s)	548, 876
DpnII	GATC	2 cut(s)	546, 874
EciI	GGCGGA	1 cut(s)	730
Eco130I	CCWWGG	1 cut(s)	57
Eco31I	GGTCTC	2 cut(s)	142, 527
Eco47I	GGWCC	1 cut(s)	620
Eco57I	CTGAAG	1 cut(s)	339
EcoRII	CCWGG	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	57
EcoT22I	ATGCAT	1 cut(s)	772
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	2 cut(s)	601, 770
FatI	CATG	2 cut(s)	597, 766
FbaI	TGATCA	1 cut(s)	874
FspBI	CTAG	4 cut(s)	422, 479, 645, 839
GlaI	GCGC	1 cut(s)	691
GsaI	CCCAGC	1 cut(s)	858
GsuI	CTGGAG	3 cut(s)	390, 682, 870
HaeIII	GGCC	1 cut(s)	230
HhaI	GCGC	1 cut(s)	692
Hin1II	CATG	2 cut(s)	601, 770
Hin6I	GCGC	1 cut(s)	690
HinP1I	GCGC	1 cut(s)	690
HincII	GTYRAC	1 cut(s)	458
HindII	GTYRAC	1 cut(s)	458
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	2 cut(s)	112, 475
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	3 cut(s)	458, 487, 787
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	6 cut(s)	357, 401, 479, 583, 735, 776
Hpy8I	GTNNAC	3 cut(s)	458, 487, 787
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	5 cut(s)	491, 676, 709, 744, 810
HpyCH4IV	ACGT	2 cut(s)	412, 901
HpyF10VI	GCNNNNNNNGC	4 cut(s)	106, 300, 371, 767
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	2 cut(s)	412, 901
Hsp92II	CATG	2 cut(s)	601, 770
HspAI	GCGC	1 cut(s)	690
Ksp22I	TGATCA	1 cut(s)	874
Kzo9I	GATC	2 cut(s)	546, 874
LmnI	GCTCC	2 cut(s)	371, 851
Lsp1109I	GCAGC	9 cut(s)	65, 86, 89, 93, 290, 352, 867, 895, 934
LweI	GCATC	2 cut(s)	303, 714
MaeI	CTAG	4 cut(s)	422, 479, 645, 839
MaeII	ACGT	2 cut(s)	412, 901
MaeIII	GTNAC	4 cut(s)	281, 667, 755, 820
MalI	GATC	2 cut(s)	548, 876
MboI	GATC	2 cut(s)	546, 874
MluCI	AATT	3 cut(s)	555, 634, 888
Mph1103I	ATGCAT	1 cut(s)	772
MseI	TTAA	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	880
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
MvnI	CGCG	1 cut(s)	418
MwoI	GCNNNNNNNGC	4 cut(s)	106, 300, 371, 767
NdeII	GATC	2 cut(s)	546, 874
NlaIII	CATG	2 cut(s)	601, 770
NlaIV	GGNNCC	1 cut(s)	427
NsiI	ATGCAT	1 cut(s)	772
NspI	RCATGY	1 cut(s)	770
PaeI	GCATGC	1 cut(s)	770
PfeI	GAWTC	2 cut(s)	112, 475
Pfl23II	CGTACG	1 cut(s)	413
Ppu21I	YACGTR	1 cut(s)	413
PshAI	GACNNNNGTC	1 cut(s)	742
PsiI	TTATAA	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	225
PspFI	CCCAGC	1 cut(s)	854
PspGI	CCWGG	1 cut(s)	225
PspLI	CGTACG	1 cut(s)	413
PspN4I	GGNNCC	1 cut(s)	427
PspPI	GGNCC	1 cut(s)	620
PstI	CTGCAG	3 cut(s)	111, 448, 885
PstNI	CAGNNNCTG	1 cut(s)	680
PvuII	CAGCTG	1 cut(s)	880
RsaI	GTAC	3 cut(s)	415, 578, 861
RsaNI	GTAC	3 cut(s)	414, 577, 860
SaqAI	TTAA	1 cut(s)	144
Sau3AI	GATC	2 cut(s)	546, 874
Sau96I	GGNCC	1 cut(s)	620
ScrFI	CCNGG	1 cut(s)	227
SfaNI	GCATC	2 cut(s)	303, 714
SfcI	CTRYAG	3 cut(s)	107, 444, 881
SinI	GGWCC	1 cut(s)	620
SmlI	CTYRAG	1 cut(s)	791
SmoI	CTYRAG	1 cut(s)	791
SphI	GCATGC	1 cut(s)	770
Sse9I	AATT	3 cut(s)	555, 634, 888
SsiI	CCGC	3 cut(s)	418, 715, 920
SspMI	CTAG	4 cut(s)	422, 479, 645, 839
StyD4I	CCNGG	1 cut(s)	225
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	5 cut(s)	491, 676, 709, 744, 810
TaiI	ACGT	2 cut(s)	415, 904
TaqI	TCGA	5 cut(s)	241, 529, 545, 568, 814
TasI	AATT	3 cut(s)	555, 634, 888
TatI	WGTACW	1 cut(s)	576
TauI	GCSGC	2 cut(s)	421, 922
TfiI	GAWTC	2 cut(s)	112, 475
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	2 cut(s)	475, 813
TseI	GCWGC	9 cut(s)	53, 74, 77, 106, 303, 365, 880, 883, 922
TspDTI	ATGAA	2 cut(s)	372, 614
TspRI	CASTG	2 cut(s)	475, 813
VpaK11BI	GGWCC	1 cut(s)	620
XapI	RAATTY	1 cut(s)	634
XbaI	TCTAGA	1 cut(s)	478
XceI	RCATGY	1 cut(s)	770
XspI	CTAG	4 cut(s)	422, 479, 645, 839
Zsp2I	ATGCAT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.