Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0006881

Physical Location & Seq

Genomic Coordinates Forward (+)

20049185 .. 20050149

Gene Structure 965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAGGTTAGATTCTGCTGCTAATAGGGCACTTAATGTCCTGGAAAGTAAATCCAATGCAAACAAAAATTTCAGTTTGTTTGGTCTTATGAATAGGACTTGTACTGTTGGAATGGGTAAAAGATTACTGCACATGTGGCTCAAACAGCCTTTATTGGATGTAAATGAAATCAACTCAAGGTTAGATTTGGTACAAGCATTTGTGGAGGATCCTGCACTTCGCCAAGATTTGAGGCAGCATCTGAAAAGAATTTCAGACATCGAGTGGCTGATGCACAATCTTGAGAAGAAAAGAGCTGGTTTGCAGCATATTGTAAAACTTTATCAGTCGTGTATAAGACTTCCCTTCATTAAGAGCGCCCTAGAACGCTATGATGGACAGTTCTCCTCACTGACCAAGGAAAGGTATTGGGAACCCCTTGAGTTATGGACTGATGGTAGCCACTTAAATAAGTTCATTTCTCTGGTGGAAGCTGCTATTGACCTTGATCAACTTAAGAATGGAGAGTACATGATATCATCTAATTATGACCCGGCACTTTCTGCAGTGAAGGAAGAGCAAGAGTTGTTGGAGCACCAAATACACACATTGCATAAACAAACCGCCAATGATCTTGATCTCGCTGTCGATAAGGCTTTAAAATTAGATAAAGGCACACAATTTGGACATGTCTTTAGAATCACAAAGAAGGAAGAGCCAAAAATAAGGAAAAAGCTCACAACGCAATTCATTGTTCTGGAAACCCGAAAGGATGGAGTGAAATTTACCAACACAAAGCTTAAGAAGTTAGGAGATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000217 GO:0000400 GO:0000403 GO:0000404 GO:0000406 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006290 GO:0006298 GO:0006301 GO:0006310 GO:0006311 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0008094 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010520 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0030983 GO:0031323 GO:0031324 GO:0032135 GO:0032137 GO:0032138 GO:0032300 GO:0032301 GO:0032302 GO:0032991 GO:0033043 GO:0033554 GO:0034641 GO:0035822 GO:0040020 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045128 GO:0045786 GO:0045835 GO:0045910 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051276 GO:0051321 GO:0051445 GO:0051447 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0060255 GO:0060631 GO:0061982 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090304 GO:0097159 GO:0110029 GO:1901360 GO:1901363 GO:1903046 GO:1990391 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko05200 ko05210 map01524 map03430 map05200 map05210

Pfam Domains

Protein Families

MutS_I MutS_II MutS_III MutS_IV MutS_V

Protein Analysis

267

Amino Acids

30.84

Weight (kDa)

9.24

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MutS_III	PF05192	7 - 210	3.3e-32	MutS domain III
MutS_IV	PF05190	175 - 265	1.6e-17	MutS family domain IV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18524
fragaria_vesca	FvH4_5g12700 FvH4_5g12700 FvH4_5g12700 FvH4_5g12700 FvH4_5g12700 FvH4_5g12700
malus_domestica	MD06G1211200.v1.1 MD14G1221900.v1.1
prunus_persica	Prupe.5G217300_v2.0.a1 Prupe.5G217300_v2.0.a1
pyrus_communis	pycom06g18850 pycom14g18350
rosa_chinensis	RchiOBHm_Chr7g0184631
rosa_laevigata	RLG00000004964
rosa_multiflora	Rmu_co8151106.1_g000001 Rmu_co8372741.1_g000001 Rmu_sc0009731.1_g000001 Rmu_sc0030268.1_g000001 Rmu_ssc0000289.1_g000029
rosa_roxburghii	Rroxscaffold_3G00269470
rosa_samantha	Rh7AG078900 Rh7BG068400 Rh7CG069200 Rh7DG068500
rosa_wichuraiana	Rw7G005640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	603
AclWI	GGATC	2 cut(s)	203, 216
AcsI	RAATTY	3 cut(s)	67, 249, 761
AfaI	GTAC	3 cut(s)	103, 192, 509
AfiI	CCNNNNNNNGG	1 cut(s)	402
AflII	CTTAAG	2 cut(s)	494, 779
AflIII	ACRYGT	2 cut(s)	132, 667
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	4 cut(s)	296, 473, 715, 778
AluI	AGCT	4 cut(s)	296, 473, 715, 778
Alw21I	GWGCWC	1 cut(s)	576
AlwI	GGATC	2 cut(s)	203, 216
AlwNI	CAGNNNCTG	1 cut(s)	241
ApeKI	GCWGC	4 cut(s)	17, 235, 304, 473
ApoI	RAATTY	3 cut(s)	67, 249, 761
AspLEI	GCGC	1 cut(s)	359
AsuC2I	CCSGG	1 cut(s)	533
BaeGI	GKGCMC	1 cut(s)	31
BamHI	GGATCC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	576
BbvI	GCAGC	4 cut(s)	4, 247, 316, 460
BccI	CCATC	3 cut(s)	368, 428, 746
BciT130I	CCWGG	1 cut(s)	41
BclI	TGATCA	1 cut(s)	487
BcnI	CCSGG	1 cut(s)	533
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	543
BfoI	RGCGCY	1 cut(s)	360
BfrI	CTTAAG	2 cut(s)	494, 779
BisI	GCNGC	4 cut(s)	18, 236, 305, 474
BlsI	GCNGC	4 cut(s)	19, 237, 306, 475
Bme1390I	CCNGG	2 cut(s)	41, 533
BmiI	GGNNCC	2 cut(s)	210, 414
BmrFI	CCNGG	2 cut(s)	41, 533
BmsI	GCATC	2 cut(s)	247, 261
BpuEI	CTTGAG	3 cut(s)	160, 302, 440
BpuMI	CCSGG	1 cut(s)	533
BsaBI	GATNNNNATC	1 cut(s)	615
BsaJI	CCNNGG	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	1 cut(s)	402
Bse3DI	GCAATG	1 cut(s)	587
Bse8I	GATNNNNATC	1 cut(s)	615
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	396
BseGI	GGATG	2 cut(s)	163, 757
BseJI	GATNNNNATC	1 cut(s)	615
BseLI	CCNNNNNNNGG	1 cut(s)	402
BseMI	GCAATG	1 cut(s)	587
BseRI	GAGGAG	1 cut(s)	376
BseSI	GKGCMC	1 cut(s)	31
BseXI	GCAGC	4 cut(s)	4, 247, 316, 460
BsgI	GTGCAG	2 cut(s)	113, 198
BsiHKAI	GWGCWC	1 cut(s)	576
BsiSI	CCGG	1 cut(s)	533
BslI	CCNNNNNNNGG	1 cut(s)	402
Bsp1286I	GDGCHC	2 cut(s)	31, 576
Bsp143I	GATC	5 cut(s)	208, 487, 610, 616, 793
BspACI	CCGC	1 cut(s)	603
BspLI	GGNNCC	2 cut(s)	210, 414
BspMAI	CTGCAG	1 cut(s)	547
BspPI	GGATC	2 cut(s)	203, 216
BspQI	GCTCTTC	2 cut(s)	549, 687
BspTI	CTTAAG	2 cut(s)	494, 779
BsrDI	GCAATG	1 cut(s)	587
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	5 cut(s)	208, 487, 610, 616, 793
BssT1I	CCWWGG	1 cut(s)	396
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	2 cut(s)	106, 381
Bst6I	CTCTTC	2 cut(s)	549, 687
BstAFI	CTTAAG	2 cut(s)	494, 779
BstAPI	GCANNNNNTGC	1 cut(s)	542
BstF5I	GGATG	2 cut(s)	163, 757
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	5 cut(s)	211, 490, 613, 619, 796
BstMBI	GATC	5 cut(s)	208, 487, 610, 616, 793
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 136, 145, 542, 721
BstNI	CCWGG	1 cut(s)	41
BstNSI	RCATGY	2 cut(s)	136, 671
BstSCI	CCNGG	2 cut(s)	39, 531
BstSFI	CTRYAG	1 cut(s)	543
BstSLI	GKGCMC	1 cut(s)	31
BstV1I	GCAGC	4 cut(s)	4, 247, 316, 460
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BtsCI	GGATG	2 cut(s)	163, 757
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	2 cut(s)	389, 552
CaiI	CAGNNNCTG	1 cut(s)	241
CfoI	GCGC	1 cut(s)	359
Csp6I	GTAC	3 cut(s)	102, 191, 508
CviAII	CATG	3 cut(s)	133, 511, 668
CviQI	GTAC	3 cut(s)	102, 191, 508
DpnI	GATC	5 cut(s)	210, 489, 612, 618, 795
DpnII	GATC	5 cut(s)	208, 487, 610, 616, 793
DraI	TTTAAA	1 cut(s)	639
Eam1104I	CTCTTC	2 cut(s)	549, 687
EarI	CTCTTC	2 cut(s)	549, 687
Eco130I	CCWWGG	1 cut(s)	396
Eco32I	GATATC	1 cut(s)	516
EcoRII	CCWGG	1 cut(s)	39
EcoRV	GATATC	1 cut(s)	516
EcoT14I	CCWWGG	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	396
FaeI	CATG	3 cut(s)	136, 514, 671
FatI	CATG	3 cut(s)	132, 510, 667
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	4 cut(s)	18, 236, 305, 474
FokI	GGATG	2 cut(s)	170, 764
Fsp4HI	GCNGC	4 cut(s)	18, 236, 305, 474
FspBI	CTAG	1 cut(s)	362
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	4 cut(s)	18, 236, 305, 474
HaeII	RGCGCY	1 cut(s)	360
HapII	CCGG	1 cut(s)	533
HhaI	GCGC	1 cut(s)	359
Hin1II	CATG	3 cut(s)	136, 514, 671
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HindIII	AAGCTT	1 cut(s)	776
HinfI	GANTC	2 cut(s)	11, 678
HpaII	CCGG	1 cut(s)	533
Hpy188I	TCNGA	2 cut(s)	243, 256
Hpy188III	TCNNGA	3 cut(s)	281, 614, 737
HpyAV	CCTTC	3 cut(s)	355, 544, 682
HpyCH4III	ACNGT	2 cut(s)	106, 381
HpyCH4V	TGCA	7 cut(s)	59, 130, 215, 274, 304, 545, 592
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 136, 145, 542, 721
Hsp92II	CATG	3 cut(s)	136, 514, 671
HspAI	GCGC	1 cut(s)	357
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	5 cut(s)	208, 487, 610, 616, 793
LguI	GCTCTTC	2 cut(s)	549, 687
LmnI	GCTCC	1 cut(s)	571
LpnPI	CCDG	7 cut(s)	26, 53, 225, 282, 449, 546, 722
Lsp1109I	GCAGC	4 cut(s)	4, 247, 316, 460
LweI	GCATC	2 cut(s)	247, 261
MaeI	CTAG	1 cut(s)	362
MalI	GATC	5 cut(s)	210, 489, 612, 618, 795
MboI	GATC	5 cut(s)	208, 487, 610, 616, 793
MboII	GAAGA	3 cut(s)	298, 566, 704
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	2 cut(s)	31, 576
MluCI	AATT	7 cut(s)	67, 249, 523, 641, 659, 725, 761
MmeI	TCCRAC	2 cut(s)	88, 549
MnlI	CCTC	3 cut(s)	199, 225, 397
MseI	TTAA	6 cut(s)	33, 351, 446, 495, 638, 780
MspCI	CTTAAG	2 cut(s)	494, 779
MspI	CCGG	1 cut(s)	533
MspR9I	CCNGG	2 cut(s)	41, 533
MvaI	CCWGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	5 cut(s)	26, 136, 145, 542, 721
NciI	CCSGG	1 cut(s)	533
NdeII	GATC	5 cut(s)	208, 487, 610, 616, 793
NlaIII	CATG	3 cut(s)	136, 514, 671
NlaIV	GGNNCC	2 cut(s)	210, 414
NspI	RCATGY	2 cut(s)	136, 671
PciI	ACATGT	2 cut(s)	132, 667
PciSI	GCTCTTC	2 cut(s)	549, 687
PfeI	GAWTC	2 cut(s)	11, 678
PfoI	TCCNGGA	1 cut(s)	39
PkrI	GCNGC	4 cut(s)	19, 237, 306, 475
PscI	ACATGT	2 cut(s)	132, 667
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	2 cut(s)	210, 414
PstI	CTGCAG	1 cut(s)	547
PstNI	CAGNNNCTG	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	3 cut(s)	103, 192, 509
RsaNI	GTAC	3 cut(s)	102, 191, 508
SapI	GCTCTTC	2 cut(s)	549, 687
SaqAI	TTAA	6 cut(s)	33, 351, 446, 495, 638, 780
SatI	GCNGC	4 cut(s)	18, 236, 305, 474
Sau3AI	GATC	5 cut(s)	208, 487, 610, 616, 793
ScrFI	CCNGG	2 cut(s)	41, 533
SduI	GDGCHC	2 cut(s)	31, 576
SetI	ASST	8 cut(s)	8, 182, 298, 407, 475, 486, 717, 780
SfaNI	GCATC	2 cut(s)	247, 261
SfcI	CTRYAG	1 cut(s)	543
SmlI	CTYRAG	5 cut(s)	175, 281, 419, 494, 779
SmoI	CTYRAG	5 cut(s)	175, 281, 419, 494, 779
Sse9I	AATT	7 cut(s)	67, 249, 523, 641, 659, 725, 761
SsiI	CCGC	1 cut(s)	603
SspMI	CTAG	1 cut(s)	362
StyD4I	CCNGG	2 cut(s)	39, 531
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	2 cut(s)	106, 381
TaqI	TCGA	2 cut(s)	261, 627
TasI	AATT	7 cut(s)	67, 249, 523, 641, 659, 725, 761
TatI	WGTACW	2 cut(s)	101, 507
TfiI	GAWTC	2 cut(s)	11, 678
Tru1I	TTAA	6 cut(s)	33, 351, 446, 495, 638, 780
Tru9I	TTAA	6 cut(s)	33, 351, 446, 495, 638, 780
TscAI	CASTG	2 cut(s)	396, 552
TseI	GCWGC	4 cut(s)	17, 235, 304, 473
TspDTI	ATGAA	5 cut(s)	104, 180, 337, 445, 718
TspRI	CASTG	2 cut(s)	396, 552
Vha464I	CTTAAG	2 cut(s)	494, 779
XapI	RAATTY	3 cut(s)	67, 249, 761
XceI	RCATGY	2 cut(s)	136, 671
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.