Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0006266

Physical Location & Seq

Genomic Coordinates Reverse (-)

20355727 .. 20356165

Gene Structure 439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGGGCGGAAGAAGGGAGCGGTGGACTTCGACGAGTCGCCGCCGGACGACTTCGATCCGGCTAATCCGTACAAGGACCCGGTGGCGATGCTGGAGATGAGGGAGCACTTGGTGCGGGAGAAGTGGATTGACATCGAGAAGGCCAAGATCGATCAGGTAGAAACTCCGTTGGTGCTACCGCATCGAAGGCGTCAACCACCTCCAGAAGTGCCGCCACCTCGTCCACCAGTACCTCGAGTCCACTCGAGGCATCGGTTGGGGGAAGGACCACCGTCCTTACGAGTTCCATGGTCCGAAGCCGGAGCCGGTGGAGTCCGAGTGATCGGTTTCAGGTACTTGTTTCTTGTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

NDUFB10

Protein Analysis

118

Amino Acids

13.37

Weight (kDa)

9.15

Isoelectric Point (pI)

58.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49140 AT1G49140 AT3G18410 AT3G18410
fragaria_vesca	FvH4_5g12140
malus_domestica	MD06G1215900.v1.1 MD14G1197200.v1.1 MD14G1226500.v1.1 MD15G1306200.v1.1
prunus_persica	Prupe.1G218000_v2.0.a1 Prupe.2G045100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1
pyrus_communis	pycom14g18790
rosa_chinensis	RchiOBHm_Chr7g0185431
rosa_laevigata	RLG00000004914
rosa_multiflora	Rmu_sc0001761.1_g000002 Rmu_sc0030883.1_g000002
rosa_roxburghii	Rroxscaffold_3G00268950
rosa_rugosa	Rorug06G0469000
rosa_samantha	Rh7AG073800 Rh7BG073900 Rh7CG074000 Rh7DG074000
rosa_wichuraiana	Rw7G006150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	20
AciI	CCGC	6 cut(s)	7, 20, 41, 115, 179, 212
AclWI	GGATC	1 cut(s)	50
AcyI	GRCGYC	1 cut(s)	190
AdeI	CACNNNGTG	1 cut(s)	112
AfaI	GTAC	3 cut(s)	71, 231, 335
Alw21I	GWGCWC	1 cut(s)	108
AlwI	GGATC	1 cut(s)	50
Ama87I	CYCGRG	2 cut(s)	234, 244
AoxI	GGCC	1 cut(s)	141
AspS9I	GGNCC	3 cut(s)	76, 266, 291
AsuC2I	CCSGG	1 cut(s)	80
AvaI	CYCGRG	2 cut(s)	234, 244
AvaII	GGWCC	3 cut(s)	76, 266, 291
Bbv12I	GWGCWC	1 cut(s)	108
BcnI	CCSGG	1 cut(s)	80
BisI	GCNGC	2 cut(s)	41, 212
BlsI	GCNGC	2 cut(s)	42, 213
Bme1390I	CCNGG	1 cut(s)	80
Bme18I	GGWCC	3 cut(s)	76, 266, 291
BmeT110I	CYCGRG	2 cut(s)	234, 244
BmgT120I	GGNCC	3 cut(s)	76, 266, 291
BmiI	GGNNCC	2 cut(s)	78, 304
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	3 cut(s)	78, 190, 259
BoxI	GACNNNNGTC	1 cut(s)	271
BpmI	CTGGAG	2 cut(s)	113, 186
BpuMI	CCSGG	1 cut(s)	80
Bsa29I	ATCGAT	1 cut(s)	150
BsaBI	GATNNNNATC	1 cut(s)	131
BsaHI	GRCGYC	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	287
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	227
Bse8I	GATNNNNATC	1 cut(s)	131
BseCI	ATCGAT	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	287
BseJI	GATNNNNATC	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	227
BshFI	GGCC	1 cut(s)	143
BshVI	ATCGAT	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	108
BsiHKCI	CYCGRG	2 cut(s)	234, 244
BsiSI	CCGG	5 cut(s)	44, 59, 80, 300, 306
BsnI	GGCC	1 cut(s)	143
BsoBI	CYCGRG	2 cut(s)	234, 244
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp143I	GATC	4 cut(s)	55, 147, 151, 321
Bsp19I	CCATGG	1 cut(s)	287
BspACI	CCGC	6 cut(s)	7, 20, 41, 115, 179, 212
BspANI	GGCC	1 cut(s)	143
BspDI	ATCGAT	1 cut(s)	150
BspLI	GGNNCC	2 cut(s)	78, 304
BspPI	GGATC	1 cut(s)	50
BsrBI	CCGCTC	1 cut(s)	20
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	227
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	4 cut(s)	55, 147, 151, 321
BssNI	GRCGYC	1 cut(s)	190
BssT1I	CCWWGG	1 cut(s)	287
Bst4CI	ACNGT	1 cut(s)	273
BstACI	GRCGYC	1 cut(s)	190
BstAPI	GCANNNNNTGC	1 cut(s)	112
BstDSI	CCRYGG	1 cut(s)	287
BstKTI	GATC	4 cut(s)	58, 150, 154, 324
BstMBI	GATC	4 cut(s)	55, 147, 151, 321
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 187
BstPAI	GACNNNNGTC	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	78
Bsu15I	ATCGAT	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	143
BsuTUI	ATCGAT	1 cut(s)	150
BtgI	CCRYGG	1 cut(s)	287
BtgZI	GCGATG	1 cut(s)	101
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	3 cut(s)	76, 266, 291
ClaI	ATCGAT	1 cut(s)	150
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	3 cut(s)	70, 230, 334
CviAII	CATG	1 cut(s)	288
CviJI	RGCY	4 cut(s)	62, 143, 299, 305
CviKI_1	RGCY	4 cut(s)	62, 143, 299, 305
CviQI	GTAC	3 cut(s)	70, 230, 334
DpnI	GATC	4 cut(s)	57, 149, 153, 323
DpnII	GATC	4 cut(s)	55, 147, 151, 321
DraIII	CACNNNGTG	1 cut(s)	112
EciI	GGCGGA	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	287
Eco47I	GGWCC	3 cut(s)	76, 266, 291
Eco88I	CYCGRG	2 cut(s)	234, 244
EcoO109I	RGGNCCY	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	287
FaeI	CATG	1 cut(s)	291
FaiI	YATR	1 cut(s)	289
FatI	CATG	1 cut(s)	287
FauI	CCCGC	1 cut(s)	108
Fnu4HI	GCNGC	2 cut(s)	41, 212
Fsp4HI	GCNGC	2 cut(s)	41, 212
GluI	GCNGC	2 cut(s)	41, 212
GsuI	CTGGAG	2 cut(s)	113, 186
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	5 cut(s)	44, 59, 80, 300, 306
HgaI	GACGC	1 cut(s)	179
Hin1I	GRCGYC	1 cut(s)	190
Hin1II	CATG	1 cut(s)	291
HincII	GTYRAC	1 cut(s)	194
HindII	GTYRAC	1 cut(s)	194
HinfI	GANTC	3 cut(s)	35, 237, 312
HpaII	CCGG	5 cut(s)	44, 59, 80, 300, 306
Hpy166II	GTNNAC	4 cut(s)	25, 194, 224, 241
Hpy188I	TCNGA	2 cut(s)	295, 317
Hpy188III	TCNNGA	2 cut(s)	136, 203
Hpy8I	GTNNAC	4 cut(s)	25, 194, 224, 241
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	4 cut(s)	7, 133, 180, 257
HpyCH4III	ACNGT	1 cut(s)	273
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 187
Hsp92I	GRCGYC	1 cut(s)	190
Hsp92II	CATG	1 cut(s)	291
Kzo9I	GATC	4 cut(s)	55, 147, 151, 321
LmnI	GCTCC	3 cut(s)	17, 103, 302
LweI	GCATC	3 cut(s)	78, 190, 259
MalI	GATC	4 cut(s)	57, 149, 153, 323
MbiI	CCGCTC	1 cut(s)	20
MboI	GATC	4 cut(s)	55, 147, 151, 321
MboII	GAAGA	1 cut(s)	22
MhlI	GDGCHC	1 cut(s)	108
MlyI	GAGTC	3 cut(s)	44, 246, 321
MnlI	CCTC	5 cut(s)	93, 210, 228, 240, 243
MspI	CCGG	5 cut(s)	44, 59, 80, 300, 306
MspR9I	CCNGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	112, 187
NciI	CCSGG	1 cut(s)	80
NcoI	CCATGG	1 cut(s)	287
NdeII	GATC	4 cut(s)	55, 147, 151, 321
NlaIII	CATG	1 cut(s)	291
NlaIV	GGNNCC	2 cut(s)	78, 304
PaeR7I	CTCGAG	2 cut(s)	234, 244
PkrI	GCNGC	2 cut(s)	42, 213
PleI	GAGTC	3 cut(s)	43, 245, 320
PpsI	GAGTC	3 cut(s)	43, 245, 320
PpuMI	RGGWCCY	1 cut(s)	76
PshAI	GACNNNNGTC	1 cut(s)	271
Psp5II	RGGWCCY	1 cut(s)	76
PspN4I	GGNNCC	2 cut(s)	78, 304
PspPI	GGNCC	3 cut(s)	76, 266, 291
PspPPI	RGGWCCY	1 cut(s)	76
PspXI	VCTCGAGB	2 cut(s)	234, 244
RsaI	GTAC	3 cut(s)	71, 231, 335
RsaNI	GTAC	3 cut(s)	70, 230, 334
SatI	GCNGC	2 cut(s)	41, 212
Sau3AI	GATC	4 cut(s)	55, 147, 151, 321
Sau96I	GGNCC	3 cut(s)	76, 266, 291
SchI	GAGTC	3 cut(s)	44, 246, 321
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	5 cut(s)	159, 202, 220, 235, 335
SfaNI	GCATC	3 cut(s)	78, 190, 259
Sfr274I	CTCGAG	2 cut(s)	234, 244
SinI	GGWCC	3 cut(s)	76, 266, 291
SlaI	CTCGAG	2 cut(s)	234, 244
SmlI	CTYRAG	2 cut(s)	234, 244
SmoI	CTYRAG	2 cut(s)	234, 244
SsiI	CCGC	6 cut(s)	7, 20, 41, 115, 179, 212
StyD4I	CCNGG	1 cut(s)	78
StyI	CCWWGG	1 cut(s)	287
TaaI	ACNGT	1 cut(s)	273
TaqI	TCGA	7 cut(s)	30, 54, 135, 150, 184, 235, 245
TauI	GCSGC	2 cut(s)	43, 214
TspGWI	ACGGA	2 cut(s)	57, 156
VpaK11BI	GGWCC	3 cut(s)	76, 266, 291
XhoI	CTCGAG	2 cut(s)	234, 244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.