pycom14g20560

Rhodanese-like domain-containing protein 8

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Reverse (-)
21577680 .. 21580355
2676 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1440 bp
ATGAGAGGGAGTTTTCCGGCGCCGGCGGTTATATCCGGTGCGGTGAGCTTCACAATTACTCAAATTGCTTTGGTGGGCAGAAGAAAGAAAGATTCGTTTGAATTCCCAGTCTGCTCCTCCTCCCAAACAGCTCGCTTTTCCTTCTCAATTCACGACGAGCATAACCAGCAGAGGCAAAGACAGAGGCGAAGACAATGCCTTTGGTTACCAGAGAGAAGAAAATGGAAAGGAGGACGTCGTGCGGGCATTGGCTTGCAATGCAAGTGCAGCTACGAAAGCGGAGGAGAGGATAACGAATGGGTGGTGGTGAATTTCTACCATTTCGTGATGATCAAAGACGCAGAGGCGGAGGTGGCCAAGCATCTCTCTTTCGTAGAGGACCTCGACATACGCGGACGGATATATCTGAATGAACAAGGGATAAATGCACAGTACAGTGGGCCGTTGAGAGATGCACTTGCATATGTTGAATGGTTAAGGGGGGACGAGAGATTTTCTGGCATCCTAGTGCAGATTTCTGCAGCAACAAATGGGCACGCCTTTCCAAAACTCAAGTTGCGGTATAAGCCCTCACTGGTTCAGTTAGAAGGGGGCATTTCCCATCTTCCTTTGCTGGACCCTTCAATGCGAGCAACGCCTCTATCGCCATCTGAATGGAGAAAGAGATTGGAATCATTGAATACAACTAGTGATGCATCAAATGACAATCTTAAAAGAAACCAGATTTTATTGGATGTGAGAAATGGTTATGAGTGGGATGTTGGTCATTTTGAAGGGGCTCGGCGACCTGATGTGGACTGCTTTAGGAGCACTTCGTTTGGGTTATCGCAACCAGAGGTCATTGCCGCAGATCCATTAGAAAATGTTGACAAAGAAAAGACAGATATATTGATGTATTGCACTGGAGGTATCCGTTGTGATGTATATTCCACAATCCTAAGACAACAGGGCTTTCAAAATCTATACACATTAAAGGGAGGTGTTTCTCATTATCTGGAGAATGAAGGTCCTGACCAGTGGATTGGTAATTTGTTCGTATTTGACTCTCGTCTCTCTCTCCCACCGCCTGCCTACAATCCTGAAACCACGACTAAAGCAAGCACGCATGAAGATTCAGAGAATAATACGTTCGCTATATGCTATATATGTAGTTCACAAGTCTGTGAGTTAAGTTCCTTTAGTTACCTATTCCCTCTCCATCCATCCCTCCCTCCCTCCTACAACTTGAAGCGTCACTGCCTAAGTATCATTTTAGCATCTGAATTATGTAAGGATTTCTATTTCAGATGCTGTATGAACTGTGTGAAGGATTTAAGAGGATGCTGCTGTTCCAACTGCACAACTGCTGCTCGACTTAGACCTGTTCTTCCAGGGTTCCAGAGATACAAGAAGTGGCACACGTATCGAGATTCGATACCACACAGCCGGTTGACGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

480

Amino Acids

54.47

Weight (kDa)

8.53

Isoelectric Point (pI)

46.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0176_N PF17773 100 - 190 1.7e-17 UPF0176 acylphosphatase like domain
Rhodanese PF00581 235 - 332 4.2e-09 Rhodanese-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 238
AccB1I GGYRCC 1 cut(s) 19
AccII CGCG 1 cut(s) 393
AciI CCGC 9 cut(s) 26, 41, 242, 279, 347, 393, 559, 846, 1064
AclWI GGATC 1 cut(s) 845
AcoI YGGCCR 1 cut(s) 354
AcsI RAATTY 2 cut(s) 101, 310
AcyI GRCGYC 2 cut(s) 20, 235
AfaI GTAC 1 cut(s) 434
AfiI CCNNNNNNNGG 1 cut(s) 1432
AflIII ACRYGT 1 cut(s) 1398
AgsI TTSAA 7 cut(s) 101, 470, 624, 679, 773, 956, 1228
AhlI ACTAGT 1 cut(s) 686
AjnI CCWGG 1 cut(s) 1369
AluBI AGCT 3 cut(s) 48, 131, 270
AluI AGCT 3 cut(s) 48, 131, 270
Alw21I GWGCWC 1 cut(s) 812
Alw26I GTCTC 1 cut(s) 1055
AlwI GGATC 1 cut(s) 845
AlwNI CAGNNNCTG 1 cut(s) 1290
AoxI GGCC 2 cut(s) 354, 440
ApeKI GCWGC 4 cut(s) 267, 521, 1323, 1346
ApoI RAATTY 2 cut(s) 101, 310
ArsI GACNNNNNNTTYG 2 cut(s) 183, 215
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 4 cut(s) 379, 440, 616, 1007
AsuHPI GGTGA 2 cut(s) 55, 319
AvaII GGWCC 3 cut(s) 379, 616, 1007
BaeGI GKGCMC 1 cut(s) 537
BalI TGGCCA 1 cut(s) 356
BanI GGYRCC 1 cut(s) 19
BanII GRGCYC 1 cut(s) 781
BbsI GAAGAC 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 812
BbvI GCAGC 4 cut(s) 279, 533, 1310, 1333
BccI CCATC 4 cut(s) 609, 655, 1206, 1210
BceAI ACGGC 1 cut(s) 427
BcgI CGANNNNNNTGC 4 cut(s) 177, 211, 1385, 1419
BciT130I CCWGG 1 cut(s) 1371
BciVI GTATCC 1 cut(s) 920
BclI TGATCA 1 cut(s) 330
BcoDI GTCTC 1 cut(s) 1055
BcuI ACTAGT 1 cut(s) 686
BfaI CTAG 2 cut(s) 506, 687
BfmI CTRYAG 1 cut(s) 519
BfoI RGCGCY 1 cut(s) 23
BfuI GTATCC 1 cut(s) 920
BisI GCNGC 5 cut(s) 268, 522, 846, 1324, 1347
BlsI GCNGC 5 cut(s) 269, 523, 847, 1325, 1348
Bme1390I CCNGG 1 cut(s) 1371
Bme18I GGWCC 3 cut(s) 379, 616, 1007
BmgT120I GGNCC 4 cut(s) 379, 440, 616, 1007
BmiI GGNNCC 3 cut(s) 21, 618, 1376
BmrFI CCNGG 1 cut(s) 1371
BmrI ACTGGG 1 cut(s) 101
BmsI GCATC 8 cut(s) 370, 442, 510, 682, 704, 1265, 1277, 1310
BmuI ACTGGG 1 cut(s) 101
BoxI GACNNNNGTC 1 cut(s) 1047
BpiI GAAGAC 1 cut(s) 196
BpmI CTGGAG 2 cut(s) 924, 1016
BpuEI CTTGAG 1 cut(s) 536
BsaAI YACGTR 1 cut(s) 1401
BsaBI GATNNNNATC 1 cut(s) 670
BsaHI GRCGYC 2 cut(s) 20, 235
BsaJI CCNNGG 1 cut(s) 1370
BsaWI WCCGGW 1 cut(s) 35
Bsc4I CCNNNNNNNGG 1 cut(s) 1432
Bse118I RCCGGY 2 cut(s) 22, 1425
Bse1I ACTGG 4 cut(s) 107, 579, 907, 1015
Bse3DI GCAATG 2 cut(s) 263, 840
Bse8I GATNNNNATC 1 cut(s) 670
BseBI CCWGG 1 cut(s) 1371
BseDI CCNNGG 1 cut(s) 1370
BseGI GGATG 6 cut(s) 501, 739, 763, 1198, 1202, 1325
BseJI GATNNNNATC 1 cut(s) 670
BseLI CCNNNNNNNGG 1 cut(s) 1432
BseMI GCAATG 2 cut(s) 263, 840
BseNI ACTGG 4 cut(s) 107, 579, 907, 1015
BseRI GAGGAG 3 cut(s) 106, 109, 297
BseSI GKGCMC 1 cut(s) 537
BseXI GCAGC 4 cut(s) 279, 533, 1310, 1333
BsgI GTGCAG 3 cut(s) 286, 530, 1321
Bsh1236I CGCG 1 cut(s) 393
BshFI GGCC 2 cut(s) 356, 442
BshNI GGYRCC 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 812
BsiSI CCGG 4 cut(s) 17, 23, 36, 1426
BslFI GGGAC 1 cut(s) 497
BslI CCNNNNNNNGG 1 cut(s) 1432
BsmAI GTCTC 1 cut(s) 1055
BsmBI CGTCTC 1 cut(s) 1055
BsmFI GGGAC 1 cut(s) 497
BsnI GGCC 2 cut(s) 356, 442
Bsp1286I GDGCHC 3 cut(s) 537, 781, 812
Bsp143I GATC 2 cut(s) 330, 850
BspACI CCGC 9 cut(s) 26, 41, 242, 279, 347, 393, 559, 846, 1064
BspANI GGCC 2 cut(s) 356, 442
BspFNI CGCG 1 cut(s) 393
BspLI GGNNCC 3 cut(s) 21, 618, 1376
BspMAI CTGCAG 1 cut(s) 523
BspPI GGATC 1 cut(s) 845
BspT107I GGYRCC 1 cut(s) 19
BsrDI GCAATG 2 cut(s) 263, 840
BsrFI RCCGGY 2 cut(s) 22, 1425
BsrI ACTGG 4 cut(s) 107, 579, 907, 1015
BssAI RCCGGY 2 cut(s) 22, 1425
BssECI CCNNGG 1 cut(s) 1370
BssMI GATC 2 cut(s) 330, 850
BssNI GRCGYC 2 cut(s) 20, 235
Bst2UI CCWGG 1 cut(s) 1371
Bst4CI ACNGT 3 cut(s) 432, 437, 1301
BstACI GRCGYC 2 cut(s) 20, 235
BstBAI YACGTR 1 cut(s) 1401
BstC8I GCNNGC 9 cut(s) 24, 133, 244, 254, 537, 630, 1068, 1099, 1103
BstDEI CTNAG 3 cut(s) 938, 1241, 1355
BstEII GGTNACC 1 cut(s) 204
BstF5I GGATG 6 cut(s) 501, 739, 763, 1198, 1202, 1325
BstFNI CGCG 1 cut(s) 393
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 2 cut(s) 333, 853
BstMAI GTCTC 1 cut(s) 1055
BstMBI GATC 2 cut(s) 330, 850
BstMWI GCNNNNNNNGC 9 cut(s) 166, 258, 267, 276, 353, 565, 634, 643, 807
BstNI CCWGG 1 cut(s) 1371
BstPAI GACNNNNGTC 1 cut(s) 1047
BstPI GGTNACC 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 1369
BstSFI CTRYAG 1 cut(s) 519
BstSLI GKGCMC 1 cut(s) 537
BstUI CGCG 1 cut(s) 393
BstV1I GCAGC 4 cut(s) 279, 533, 1310, 1333
BstV2I GAAGAC 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 850
BstXI CCANNNNNNTGG 2 cut(s) 654, 1022
BstYI RGATCY 1 cut(s) 850
BsuI GTATCC 1 cut(s) 920
BsuRI GGCC 2 cut(s) 356, 442
BtsCI GGATG 6 cut(s) 501, 739, 763, 1198, 1202, 1325
BtsI GCAGTG 1 cut(s) 1234
BtsIMutI CAGTG 5 cut(s) 442, 572, 900, 1022, 1234
Cac8I GCNNGC 9 cut(s) 24, 133, 244, 254, 537, 630, 1068, 1099, 1103
CaiI CAGNNNCTG 1 cut(s) 1290
CfoI GCGC 1 cut(s) 22
Cfr10I RCCGGY 2 cut(s) 22, 1425
Cfr13I GGNCC 4 cut(s) 379, 440, 616, 1007
CseI GACGC 2 cut(s) 347, 1220
Csp6I GTAC 1 cut(s) 433
CviAII CATG 1 cut(s) 1106
CviQI GTAC 1 cut(s) 433
DdeI CTNAG 3 cut(s) 938, 1241, 1355
DinI GGCGCC 1 cut(s) 21
DpnI GATC 2 cut(s) 332, 852
DpnII GATC 2 cut(s) 330, 850
EaeI YGGCCR 1 cut(s) 354
EciI GGCGGA 1 cut(s) 362
Eco24I GRGCYC 1 cut(s) 781
Eco47I GGWCC 3 cut(s) 379, 616, 1007
Eco91I GGTNACC 1 cut(s) 204
EcoO109I RGGNCCY 2 cut(s) 379, 1007
EcoO65I GGTNACC 1 cut(s) 204
EcoRI GAATTC 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 1369
EcoT22I ATGCAT 1 cut(s) 697
EcoT38I GRGCYC 1 cut(s) 781
EgeI GGCGCC 1 cut(s) 21
EheI GGCGCC 1 cut(s) 21
Esp3I CGTCTC 1 cut(s) 1055
FaeI CATG 1 cut(s) 1109
FaqI GGGAC 1 cut(s) 497
FatI CATG 1 cut(s) 1105
FauI CCCGC 1 cut(s) 235
FauNDI CATATG 1 cut(s) 463
FbaI TGATCA 1 cut(s) 330
Fnu4HI GCNGC 5 cut(s) 268, 522, 846, 1324, 1347
FokI GGATG 6 cut(s) 488, 746, 770, 1185, 1189, 1332
FriOI GRGCYC 1 cut(s) 781
Fsp4HI GCNGC 5 cut(s) 268, 522, 846, 1324, 1347
FspBI CTAG 2 cut(s) 506, 687
GlaI GCGC 1 cut(s) 21
GluI GCNGC 5 cut(s) 268, 522, 846, 1324, 1347
GsuI CTGGAG 2 cut(s) 924, 1016
HaeII RGCGCY 1 cut(s) 23
HaeIII GGCC 2 cut(s) 356, 442
HapII CCGG 4 cut(s) 17, 23, 36, 1426
HgaI GACGC 2 cut(s) 347, 1220
HhaI GCGC 1 cut(s) 22
Hin1I GRCGYC 2 cut(s) 20, 235
Hin1II CATG 1 cut(s) 1109
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HincII GTYRAC 2 cut(s) 868, 1431
HindII GTYRAC 2 cut(s) 868, 1431
HinfI GANTC 5 cut(s) 92, 671, 1043, 1112, 1409
HpaII CCGG 4 cut(s) 17, 23, 36, 1426
HphI GGTGA 2 cut(s) 55, 319
Hpy166II GTNNAC 4 cut(s) 796, 868, 1154, 1431
Hpy188I TCNGA 5 cut(s) 408, 652, 1117, 1261, 1286
Hpy188III TCNNGA 7 cut(s) 152, 325, 995, 1010, 1079, 1378, 1406
Hpy8I GTNNAC 4 cut(s) 796, 868, 1154, 1431
Hpy99I CGWCG 2 cut(s) 158, 240
HpyAV CCTTC 6 cut(s) 151, 581, 630, 767, 998, 1300
HpyCH4III ACNGT 3 cut(s) 432, 437, 1301
HpyCH4IV ACGT 3 cut(s) 235, 1127, 1400
HpyF10VI GCNNNNNNNGC 9 cut(s) 166, 258, 267, 276, 353, 565, 634, 643, 807
HpyF3I CTNAG 3 cut(s) 938, 1241, 1355
HpySE526I ACGT 3 cut(s) 235, 1127, 1400
Hsp92I GRCGYC 2 cut(s) 20, 235
Hsp92II CATG 1 cut(s) 1109
HspAI GCGC 1 cut(s) 20
KasI GGCGCC 1 cut(s) 19
KroI GCCGGC 1 cut(s) 22
KroNI GCCGGC 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 330
Kzo9I GATC 2 cut(s) 330, 850
LmnI GCTCC 2 cut(s) 119, 807
Lsp1109I GCAGC 4 cut(s) 279, 533, 1310, 1333
LweI GCATC 8 cut(s) 370, 442, 510, 682, 704, 1265, 1277, 1310
MaeI CTAG 2 cut(s) 506, 687
MaeII ACGT 3 cut(s) 235, 1127, 1400
MaeIII GTNAC 3 cut(s) 204, 1181, 1232
MalI GATC 2 cut(s) 332, 852
MboI GATC 2 cut(s) 330, 850
MboII GAAGA 6 cut(s) 93, 201, 228, 596, 1121, 1358
MflI RGATCY 1 cut(s) 850
MhlI GDGCHC 3 cut(s) 537, 781, 812
MlsI TGGCCA 1 cut(s) 356
MluCI AATT 7 cut(s) 54, 63, 101, 147, 310, 1027, 1262
MluNI TGGCCA 1 cut(s) 356
Mly113I GGCGCC 1 cut(s) 20
MlyI GAGTC 1 cut(s) 1037
MmeI TCCRAC 1 cut(s) 1356
Mox20I TGGCCA 1 cut(s) 356
Mph1103I ATGCAT 1 cut(s) 697
MreI CGCCGGCG 1 cut(s) 22
MroNI GCCGGC 1 cut(s) 22
MscI TGGCCA 1 cut(s) 356
MseI TTAA 5 cut(s) 476, 711, 971, 1169, 1313
MslI CAYNNNNRTG 2 cut(s) 506, 652
Msp20I TGGCCA 1 cut(s) 356
MspI CCGG 4 cut(s) 17, 23, 36, 1426
MspR9I CCNGG 1 cut(s) 1371
MvaI CCWGG 1 cut(s) 1371
MvnI CGCG 1 cut(s) 393
MwoI GCNNNNNNNGC 9 cut(s) 166, 258, 267, 276, 353, 565, 634, 643, 807
NaeI GCCGGC 1 cut(s) 24
NarI GGCGCC 1 cut(s) 20
NdeI CATATG 1 cut(s) 463
NdeII GATC 2 cut(s) 330, 850
NgoMIV GCCGGC 1 cut(s) 22
NlaIII CATG 1 cut(s) 1109
NlaIV GGNNCC 3 cut(s) 21, 618, 1376
NmeAIII GCCGAG 1 cut(s) 760
NmuCI GTSAC 1 cut(s) 1232
NsiI ATGCAT 1 cut(s) 697
PdiI GCCGGC 1 cut(s) 24
PfeI GAWTC 4 cut(s) 92, 671, 1112, 1409
PkrI GCNGC 5 cut(s) 269, 523, 847, 1325, 1348
PleI GAGTC 1 cut(s) 1037
PluTI GGCGCC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 1037
Ppu21I YACGTR 1 cut(s) 1401
PpuMI RGGWCCY 2 cut(s) 379, 1007
PshAI GACNNNNGTC 1 cut(s) 1047
Psp5II RGGWCCY 2 cut(s) 379, 1007
Psp6I CCWGG 1 cut(s) 1369
PspEI GGTNACC 1 cut(s) 204
PspGI CCWGG 1 cut(s) 1369
PspN4I GGNNCC 3 cut(s) 21, 618, 1376
PspPI GGNCC 4 cut(s) 379, 440, 616, 1007
PspPPI RGGWCCY 2 cut(s) 379, 1007
PstI CTGCAG 1 cut(s) 523
PstNI CAGNNNCTG 1 cut(s) 1290
PsuI RGATCY 1 cut(s) 850
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
RseI CAYNNNNRTG 2 cut(s) 506, 652
SaqAI TTAA 5 cut(s) 476, 711, 971, 1169, 1313
SatI GCNGC 5 cut(s) 268, 522, 846, 1324, 1347
Sau3AI GATC 2 cut(s) 330, 850
Sau96I GGNCC 4 cut(s) 379, 440, 616, 1007
SchI GAGTC 1 cut(s) 1037
ScrFI CCNGG 1 cut(s) 1371
SduI GDGCHC 3 cut(s) 537, 781, 812
SfaNI GCATC 8 cut(s) 370, 442, 510, 682, 704, 1265, 1277, 1310
SfcI CTRYAG 1 cut(s) 519
SfoI GGCGCC 1 cut(s) 21
SgrAI CRCCGGYG 1 cut(s) 22
SinI GGWCC 3 cut(s) 379, 616, 1007
SmiMI CAYNNNNRTG 2 cut(s) 506, 652
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
SpeI ACTAGT 1 cut(s) 686
Sse9I AATT 7 cut(s) 54, 63, 101, 147, 310, 1027, 1262
SsiI CCGC 9 cut(s) 26, 41, 242, 279, 347, 393, 559, 846, 1064
SspDI GGCGCC 1 cut(s) 19
SspMI CTAG 2 cut(s) 506, 687
StyD4I CCNGG 1 cut(s) 1369
TaaI ACNGT 3 cut(s) 432, 437, 1301
TaiI ACGT 3 cut(s) 238, 1130, 1403
TaqI TCGA 4 cut(s) 384, 1351, 1405, 1412
TasI AATT 7 cut(s) 54, 63, 101, 147, 310, 1027, 1262
TatI WGTACW 1 cut(s) 432
TauI GCSGC 1 cut(s) 848
TfiI GAWTC 4 cut(s) 92, 671, 1112, 1409
Tru1I TTAA 5 cut(s) 476, 711, 971, 1169, 1313
Tru9I TTAA 5 cut(s) 476, 711, 971, 1169, 1313
TscAI CASTG 5 cut(s) 442, 579, 907, 1022, 1241
TseFI GTSAC 1 cut(s) 1232
TseI GCWGC 4 cut(s) 267, 521, 1323, 1346
Tsp45I GTSAC 1 cut(s) 1232
TspDTI ATGAA 4 cut(s) 426, 1017, 1122, 1310
TspGWI ACGGA 2 cut(s) 412, 902
TspRI CASTG 5 cut(s) 442, 579, 907, 1022, 1241
VpaK11BI GGWCC 3 cut(s) 379, 616, 1007
XapI RAATTY 2 cut(s) 101, 310
XspI CTAG 2 cut(s) 506, 687
ZraI GACGTC 1 cut(s) 236
Zsp2I ATGCAT 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.