Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0009184

Physical Location & Seq

Genomic Coordinates Reverse (-)

21670447 .. 21673397

Gene Structure 2951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGTGGGTGGTGTAACACCGAAGAAGGGTGGGACTGAGCATTTGGGACTTCCTGTTTTCAACTCAGTTGCAGAAGCAAAAGCTGAAACAAAGGCTAACGCCTCAGTCATATATGTCCCCCCACCATTTGCTGCTGCTGCTATTCTTGAGGCAGTGGAAGCAGAGCTGGATCTTGTTGTGTGCATTACGGAGGGGATCCCACAACATGATATGGTGCGTGTCAAGGCTGCTATTAACAGGCAATCTAAAACTCGGCTCATTGGGCCAAATTGCCCTGGAATTATTAAGCCTGGTGAATGCAAAATCGGAATTATGCCTGGCTACATTCATAAACCTGGGCGTATAGGAATTGTTTCTCGATCTGGTACCTTGACCTATGAAGCAGTTTTCCAAACAACTGCTGTTGGCCTTGGACAATCCACCTGTGTTGGTATTGGGGGGGATCCATTTAACGGTACAAACTTTGTTGATTGCATTGACAGATTCCTACAAGATCCTCAAACAGAAGGTATCATTCTTATAGGAGAGATTGGTGGGACTGCGGAAGAGGATGCTGCTGCATTGATTAAGGAAAGTGGAACTGAGAAGCCTGTTGTTGCATTTATTGCTGGATTAACTGCACCTCCTGGTCGTCGTATGGGTCATGCTGGAGCTATTGTGTCGGGGGGGAAGGGTACCGCACAAGACAAAATCAAGACACTAAGGGAAGCTGATGTTACAGTGGTGGAGTCTCCCGCGAAAATTGGGGTAGCCATGCTTGACGTCTTCAAACAGAGGGGCCTTGTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004774 GO:0004775 GO:0004776 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006104 GO:0006105 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0010035 GO:0010038 GO:0015980 GO:0016874 GO:0016877 GO:0016878 GO:0016999 GO:0017144 GO:0019637 GO:0019693 GO:0019752 GO:0030312 GO:0031974 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046483 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0071944 GO:0072350 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00640 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00640 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

CoA_binding Ligase_CoA

Protein Analysis

264

Amino Acids

27.26

Weight (kDa)

6.44

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoA_binding	PF02629	1 - 65	1.2e-21	CoA binding domain
Succ_CoA_lig	PF13607	112 - 220	2.6e-10	Succinyl-CoA ligase like flavodoxin domain
Ligase_CoA	PF00549	118 - 238	1.2e-30	CoA-ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08300 AT5G23250 AT5G23250 AT5G23250
fragaria_vesca	FvH4_5g18391
malus_domestica	MD06G1239800.v1.1 MD14G1245700.v1.1
prunus_persica	Prupe.5G243700_v2.0.a1 Prupe.5G243700_v2.0.a1
pyrus_communis	pycom06g21530 pycom14g20660
rosa_chinensis	RchiOBHm_Chr7g0177081
rosa_laevigata	RLG00000005558
rosa_multiflora	Rmu_sc0005310.1_g000024 Rmu_sc0005310.1_g000025 Rmu_sc0005912.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276110
rosa_rugosa	Rorug06G0403600
rosa_samantha	Rh7AG003000 Rh7CG002600 Rh7DG003100
rosa_wichuraiana	Rw7G000250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	765
Acc65I	GGTACC	2 cut(s)	365, 674
AccB1I	GGYRCC	2 cut(s)	365, 674
AccII	CGCG	1 cut(s)	737
AciI	CCGC	3 cut(s)	542, 678, 735
AclWI	GGATC	6 cut(s)	177, 190, 203, 437, 450, 488
AcyI	GRCGYC	1 cut(s)	762
AfaI	GTAC	3 cut(s)	367, 457, 676
AfiI	CCNNNNNNNGG	2 cut(s)	26, 452
AgsI	TTSAA	2 cut(s)	61, 769
AjnI	CCWGG	5 cut(s)	274, 289, 316, 334, 625
AluBI	AGCT	4 cut(s)	83, 166, 653, 710
AluI	AGCT	4 cut(s)	83, 166, 653, 710
Alw26I	GTCTC	1 cut(s)	735
AlwI	GGATC	6 cut(s)	177, 190, 203, 437, 450, 488
AoxI	GGCC	3 cut(s)	263, 406, 778
ApeKI	GCWGC	6 cut(s)	131, 134, 137, 227, 554, 557
ArsI	GACNNNNNNTTYG	2 cut(s)	25, 57
Asp700I	GAANNNNTTC	1 cut(s)	352
Asp718I	GGTACC	2 cut(s)	365, 674
AspS9I	GGNCC	2 cut(s)	263, 778
AsuHPI	GGTGA	1 cut(s)	305
BamHI	GGATCC	2 cut(s)	195, 442
BanI	GGYRCC	2 cut(s)	365, 674
BbsI	GAAGAC	1 cut(s)	757
BbvI	GCAGC	6 cut(s)	118, 121, 124, 214, 541, 544
BciT130I	CCWGG	5 cut(s)	276, 291, 318, 336, 627
BcoDI	GTCTC	1 cut(s)	735
BisI	GCNGC	6 cut(s)	132, 135, 138, 228, 555, 558
BlsI	GCNGC	6 cut(s)	133, 136, 139, 229, 556, 559
Bme1390I	CCNGG	5 cut(s)	276, 291, 318, 336, 627
BmgT120I	GGNCC	2 cut(s)	263, 778
BmiI	GGNNCC	5 cut(s)	197, 367, 444, 676, 779
BmrFI	CCNGG	5 cut(s)	276, 291, 318, 336, 627
BmsI	GCATC	1 cut(s)	541
BpiI	GAAGAC	1 cut(s)	757
BpmI	CTGGAG	1 cut(s)	669
BpuEI	CTTGAG	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	762
BsaJI	CCNNGG	3 cut(s)	274, 335, 409
BsaXI	ACNNNNNCTCC	4 cut(s)	607, 637, 642, 672
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 452
BseBI	CCWGG	5 cut(s)	276, 291, 318, 336, 627
BseDI	CCNNGG	3 cut(s)	274, 335, 409
BseGI	GGATG	1 cut(s)	556
BseLI	CCNNNNNNNGG	2 cut(s)	26, 452
BseMII	CTCAG	4 cut(s)	27, 78, 117, 573
BseXI	GCAGC	6 cut(s)	118, 121, 124, 214, 541, 544
BsgI	GTGCAG	1 cut(s)	603
Bsh1236I	CGCG	1 cut(s)	737
BshFI	GGCC	3 cut(s)	265, 408, 780
BshNI	GGYRCC	2 cut(s)	365, 674
BslFI	GGGAC	4 cut(s)	46, 60, 101, 550
BslI	CCNNNNNNNGG	2 cut(s)	26, 452
BsmAI	GTCTC	1 cut(s)	735
BsmFI	GGGAC	4 cut(s)	46, 60, 101, 550
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	3 cut(s)	265, 408, 780
Bsp143I	GATC	5 cut(s)	169, 195, 359, 442, 493
BspACI	CCGC	3 cut(s)	542, 678, 735
BspANI	GGCC	3 cut(s)	265, 408, 780
BspCNI	CTCAG	4 cut(s)	28, 77, 116, 574
BspFNI	CGCG	1 cut(s)	737
BspLI	GGNNCC	5 cut(s)	197, 367, 444, 676, 779
BspPI	GGATC	6 cut(s)	177, 190, 203, 437, 450, 488
BspT107I	GGYRCC	2 cut(s)	365, 674
BssECI	CCNNGG	3 cut(s)	274, 335, 409
BssMI	GATC	5 cut(s)	169, 195, 359, 442, 493
BssNI	GRCGYC	1 cut(s)	762
BssT1I	CCWWGG	1 cut(s)	409
Bst2UI	CCWGG	5 cut(s)	276, 291, 318, 336, 627
Bst4CI	ACNGT	2 cut(s)	455, 721
Bst6I	CTCTTC	1 cut(s)	540
BstACI	GRCGYC	1 cut(s)	762
BstAPI	GCANNNNNTGC	1 cut(s)	605
BstDEI	CTNAG	5 cut(s)	36, 64, 103, 582, 701
BstF5I	GGATG	1 cut(s)	556
BstFNI	CGCG	1 cut(s)	737
BstKTI	GATC	5 cut(s)	172, 198, 362, 445, 496
BstMAI	GTCTC	1 cut(s)	735
BstMBI	GATC	5 cut(s)	169, 195, 359, 442, 493
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 158, 262, 605
BstNI	CCWGG	5 cut(s)	276, 291, 318, 336, 627
BstSCI	CCNGG	5 cut(s)	274, 289, 316, 334, 625
BstUI	CGCG	1 cut(s)	737
BstV1I	GCAGC	6 cut(s)	118, 121, 124, 214, 541, 544
BstV2I	GAAGAC	1 cut(s)	757
BstX2I	RGATCY	4 cut(s)	169, 195, 442, 493
BstYI	RGATCY	4 cut(s)	169, 195, 442, 493
BsuRI	GGCC	3 cut(s)	265, 408, 780
BtsCI	GGATG	1 cut(s)	556
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	2 cut(s)	159, 726
Cfr13I	GGNCC	2 cut(s)	263, 778
Csp6I	GTAC	3 cut(s)	366, 456, 675
CspCI	CAANNNNNGTGG	2 cut(s)	409, 444
CviAII	CATG	3 cut(s)	206, 644, 754
CviQI	GTAC	3 cut(s)	366, 456, 675
DdeI	CTNAG	5 cut(s)	36, 64, 103, 582, 701
DpnI	GATC	5 cut(s)	171, 197, 361, 444, 495
DpnII	GATC	5 cut(s)	169, 195, 359, 442, 493
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
Eco130I	CCWWGG	1 cut(s)	409
EcoO109I	RGGNCCY	1 cut(s)	778
EcoRII	CCWGG	5 cut(s)	274, 289, 316, 334, 625
EcoT14I	CCWWGG	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	3 cut(s)	209, 647, 757
FaqI	GGGAC	4 cut(s)	46, 60, 101, 550
FatI	CATG	3 cut(s)	205, 643, 753
FauI	CCCGC	1 cut(s)	742
Fnu4HI	GCNGC	6 cut(s)	132, 135, 138, 228, 555, 558
FokI	GGATG	1 cut(s)	563
Fsp4HI	GCNGC	6 cut(s)	132, 135, 138, 228, 555, 558
GluI	GCNGC	6 cut(s)	132, 135, 138, 228, 555, 558
GsuI	CTGGAG	1 cut(s)	669
HaeIII	GGCC	3 cut(s)	265, 408, 780
Hin1I	GRCGYC	1 cut(s)	762
Hin1II	CATG	3 cut(s)	209, 647, 757
HinfI	GANTC	2 cut(s)	483, 728
HphI	GGTGA	1 cut(s)	305
Hpy188I	TCNGA	1 cut(s)	308
Hpy188III	TCNNGA	3 cut(s)	146, 357, 694
Hpy99I	CGWCG	1 cut(s)	636
HpyAV	CCTTC	3 cut(s)	19, 500, 664
HpyCH4III	ACNGT	2 cut(s)	455, 721
HpyCH4IV	ACGT	1 cut(s)	762
HpyCH4V	TGCA	7 cut(s)	71, 183, 300, 474, 560, 599, 620
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 158, 262, 605
HpyF3I	CTNAG	5 cut(s)	36, 64, 103, 582, 701
HpySE526I	ACGT	1 cut(s)	762
Hsp92I	GRCGYC	1 cut(s)	762
Hsp92II	CATG	3 cut(s)	209, 647, 757
KpnI	GGTACC	2 cut(s)	369, 678
Kzo9I	GATC	5 cut(s)	169, 195, 359, 442, 493
LmnI	GCTCC	1 cut(s)	650
Lsp1109I	GCAGC	6 cut(s)	118, 121, 124, 214, 541, 544
LweI	GCATC	1 cut(s)	541
MaeII	ACGT	1 cut(s)	762
MaeIII	GTNAC	2 cut(s)	13, 715
MalI	GATC	5 cut(s)	171, 197, 361, 444, 495
MboI	GATC	5 cut(s)	169, 195, 359, 442, 493
MboII	GAAGA	3 cut(s)	34, 557, 757
MflI	RGATCY	4 cut(s)	169, 195, 442, 493
MluCI	AATT	6 cut(s)	268, 279, 309, 348, 741, 787
MlyI	GAGTC	1 cut(s)	737
MnlI	CCTC	7 cut(s)	112, 142, 184, 507, 541, 633, 768
MroXI	GAANNNNTTC	1 cut(s)	352
MseI	TTAA	5 cut(s)	234, 285, 450, 567, 614
MspR9I	CCNGG	5 cut(s)	276, 291, 318, 336, 627
Mva1269I	GAATGC	1 cut(s)	302
MvaI	CCWGG	5 cut(s)	276, 291, 318, 336, 627
MvnI	CGCG	1 cut(s)	737
MwoI	GCNNNNNNNGC	4 cut(s)	137, 158, 262, 605
NdeII	GATC	5 cut(s)	169, 195, 359, 442, 493
NlaIII	CATG	3 cut(s)	209, 647, 757
NlaIV	GGNNCC	5 cut(s)	197, 367, 444, 676, 779
NmeAIII	GCCGAG	1 cut(s)	232
PctI	GAATGC	1 cut(s)	302
PdmI	GAANNNNTTC	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	483
PkrI	GCNGC	6 cut(s)	133, 136, 139, 229, 556, 559
PleI	GAGTC	1 cut(s)	736
PpsI	GAGTC	1 cut(s)	736
Psp6I	CCWGG	5 cut(s)	274, 289, 316, 334, 625
PspGI	CCWGG	5 cut(s)	274, 289, 316, 334, 625
PspN4I	GGNNCC	5 cut(s)	197, 367, 444, 676, 779
PspPI	GGNCC	2 cut(s)	263, 778
PsuI	RGATCY	4 cut(s)	169, 195, 442, 493
RsaI	GTAC	3 cut(s)	367, 457, 676
RsaNI	GTAC	3 cut(s)	366, 456, 675
SaqAI	TTAA	5 cut(s)	234, 285, 450, 567, 614
SatI	GCNGC	6 cut(s)	132, 135, 138, 228, 555, 558
Sau3AI	GATC	5 cut(s)	169, 195, 359, 442, 493
Sau96I	GGNCC	2 cut(s)	263, 778
SchI	GAGTC	1 cut(s)	737
ScrFI	CCNGG	5 cut(s)	276, 291, 318, 336, 627
SfaNI	GCATC	1 cut(s)	541
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	6 cut(s)	268, 279, 309, 348, 741, 787
SsiI	CCGC	3 cut(s)	542, 678, 735
StyD4I	CCNGG	5 cut(s)	274, 289, 316, 334, 625
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	2 cut(s)	455, 721
TaiI	ACGT	1 cut(s)	765
TaqI	TCGA	1 cut(s)	358
TasI	AATT	6 cut(s)	268, 279, 309, 348, 741, 787
TfiI	GAWTC	1 cut(s)	483
Tru1I	TTAA	5 cut(s)	234, 285, 450, 567, 614
Tru9I	TTAA	5 cut(s)	234, 285, 450, 567, 614
TscAI	CASTG	2 cut(s)	159, 726
TseI	GCWGC	6 cut(s)	131, 134, 137, 227, 554, 557
TspDTI	ATGAA	2 cut(s)	317, 393
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	2 cut(s)	159, 726
XmnI	GAANNNNTTC	1 cut(s)	352
ZraI	GACGTC	1 cut(s)	763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.