Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009075

Physical Location & Seq

Genomic Coordinates Reverse (-)

268054 .. 269807

Gene Structure 1754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGCCAAGTTTAACCTCCGACAAGCTTCCTTCAAATTGGACAACCTTGCTCCGACGCCAGCAAGTTAATAAACTTCATGTACGCCATCGCCACTTTCAAACTAAGCCCTGCAGCACGGGAATGACGGATGAGGTGGGCTTTTGGCCCATCTGCCAAAACACTTCTCACCTCTCCATCGTCGCCCTCTGTCTCTCTCTCGTCTCAGAATCCTTCTCAATCATTCGTCAACAGACAACAGAGTCGAAAAGAATGGATGAGAAGGATGCGAATGAATTAACAGCAAGCCCTAAGACGACGCAAAAGCTAGCAATGGAAGGCCAGAAGCATTTGGAAGAAACTATCGAGGCAGCTTTCCAGATCCTTTCCTCCATGAACGACGAGCTCTGCAACCCCACCTTGTGGTCCACCACCGGCACCGCCTCCTCTAACACTGCAAGTGGCCCTTCTTTCCACTCAAACGGCGTCAATAACGGCGATTCTTCTTCTTCTGAAAACACTTCTTCCCATCAGCATGGAGACTTCGTTGGCGCTGGTGGTCCTGGCACCGGAGGAGCTCTTGAGGAGGCTCGATTTCGGTATAAGAACTCTGTGGGCTTGCTTCGTGCCGTTCTCGCTGCAATTCCCAACTCTCAGAAGGCAACATCCAAAACCAGTTCAACTGCTGTCGGTGCAGAATCAACGGCAGATCAAGCTGAAATTGACAAGTTGGATGAGCGAGCCTCCGATTTGAGAAAGGAGCTTACGAACAAGAATGTGTACATCAAATTTCTTATAGATCAACTACGGGATCTTATCACTGACATATCAACGTGGCAAAGTCCTTGTTCCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

278

Amino Acids

30.19

Weight (kDa)

6.07

Isoelectric Point (pI)

35.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63480 AT5G63480
fragaria_vesca	FvH4_1g29942 FvH4_2g37750
malus_domestica	MD08G1006700.v1.1 MD15G1005900.v1.1
prunus_persica	Prupe.1G358600_v2.0.a1
pyrus_communis	pycom08g00520 pycom15g00450
rosa_chinensis	RchiOBHm_Chr6g0303761
rosa_laevigata	RLG00000011047 RLG00000027493
rosa_multiflora	Rmu_sc0014011.1_g000001
rosa_rugosa	Rorug02G0181300 Rorug04G0014400 Rorug05G0039400 Rorug06G0324600
rosa_samantha	Rh6AG438900 Rh6BG464100 Rh6CG451200 Rh6DG438100
rosa_wichuraiana	Rw6G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	238
AccB1I	GGYRCC	2 cut(s)	413, 542
AccB7I	CCANNNNNTGG	1 cut(s)	399
AciI	CCGC	1 cut(s)	417
AclWI	GGATC	2 cut(s)	352, 795
AcsI	RAATTY	1 cut(s)	764
AcyI	GRCGYC	2 cut(s)	55, 462
AdeI	CACNNNGTG	1 cut(s)	399
AfaI	GTAC	2 cut(s)	81, 758
AfiI	CCNNNNNNNGG	2 cut(s)	399, 545
AgsI	TTSAA	3 cut(s)	33, 98, 657
AjnI	CCWGG	1 cut(s)	538
AluBI	AGCT	7 cut(s)	25, 304, 350, 382, 554, 692, 739
AluI	AGCT	7 cut(s)	25, 304, 350, 382, 554, 692, 739
Alw21I	GWGCWC	2 cut(s)	384, 556
Alw26I	GTCTC	3 cut(s)	194, 205, 510
AlwI	GGATC	2 cut(s)	352, 795
AoxI	GGCC	3 cut(s)	143, 316, 439
ApeKI	GCWGC	3 cut(s)	111, 347, 614
ApoI	RAATTY	1 cut(s)	764
AspLEI	GCGC	1 cut(s)	530
AspS9I	GGNCC	4 cut(s)	144, 402, 440, 536
AsuHPI	GGTGA	1 cut(s)	158
AsuNHI	GCTAGC	1 cut(s)	304
AvaII	GGWCC	2 cut(s)	402, 536
BanI	GGYRCC	2 cut(s)	413, 542
BanII	GRGCYC	2 cut(s)	384, 556
Bbv12I	GWGCWC	2 cut(s)	384, 556
BbvI	GCAGC	3 cut(s)	123, 359, 601
BccI	CCATC	4 cut(s)	93, 155, 182, 513
BceAI	ACGGC	4 cut(s)	475, 487, 590, 696
BciT130I	CCWGG	1 cut(s)	540
BcoDI	GTCTC	3 cut(s)	194, 205, 510
BfaI	CTAG	1 cut(s)	305
BfmI	CTRYAG	1 cut(s)	109
BfoI	RGCGCY	1 cut(s)	531
BisI	GCNGC	3 cut(s)	112, 348, 615
BlsI	GCNGC	3 cut(s)	113, 349, 616
Bme1390I	CCNGG	1 cut(s)	540
Bme18I	GGWCC	2 cut(s)	402, 536
BmgT120I	GGNCC	4 cut(s)	144, 402, 440, 536
BmiI	GGNNCC	2 cut(s)	415, 544
BmrFI	CCNGG	1 cut(s)	540
BmsI	GCATC	1 cut(s)	253
BmtI	GCTAGC	1 cut(s)	308
BplI	GAGNNNNNCTC	2 cut(s)	704, 736
BpuEI	CTTGAG	1 cut(s)	578
BsaHI	GRCGYC	2 cut(s)	55, 462
BsaWI	WCCGGW	1 cut(s)	545
BsaXI	ACNNNNNCTCC	2 cut(s)	507, 537
Bsc4I	CCNNNNNNNGG	2 cut(s)	399, 545
Bse118I	RCCGGY	1 cut(s)	410
Bse1I	ACTGG	1 cut(s)	651
Bse3DI	GCAATG	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	540
BseGI	GGATG	5 cut(s)	133, 259, 268, 641, 715
BseLI	CCNNNNNNNGG	2 cut(s)	399, 545
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	2 cut(s)	216, 644
BseNI	ACTGG	1 cut(s)	651
BseRI	GAGGAG	3 cut(s)	412, 564, 575
BseXI	GCAGC	3 cut(s)	123, 359, 601
BsgI	GTGCAG	1 cut(s)	690
BshFI	GGCC	3 cut(s)	145, 318, 441
BshNI	GGYRCC	2 cut(s)	413, 542
BsiHKAI	GWGCWC	2 cut(s)	384, 556
BsiSI	CCGG	2 cut(s)	411, 546
BslI	CCNNNNNNNGG	2 cut(s)	399, 545
BsmAI	GTCTC	3 cut(s)	194, 205, 510
BsmBI	CGTCTC	1 cut(s)	205
BsnI	GGCC	3 cut(s)	145, 318, 441
Bsp1286I	GDGCHC	2 cut(s)	384, 556
Bsp1407I	TGTACA	1 cut(s)	756
Bsp143I	GATC	4 cut(s)	357, 685, 775, 787
BspACI	CCGC	1 cut(s)	417
BspANI	GGCC	3 cut(s)	145, 318, 441
BspCNI	CTCAG	2 cut(s)	215, 643
BspLI	GGNNCC	2 cut(s)	415, 544
BspMAI	CTGCAG	1 cut(s)	113
BspOI	GCTAGC	1 cut(s)	308
BspPI	GGATC	2 cut(s)	352, 795
BspT107I	GGYRCC	2 cut(s)	413, 542
BsrDI	GCAATG	1 cut(s)	315
BsrFI	RCCGGY	1 cut(s)	410
BsrGI	TGTACA	1 cut(s)	756
BsrI	ACTGG	1 cut(s)	651
BssAI	RCCGGY	1 cut(s)	410
BssMI	GATC	4 cut(s)	357, 685, 775, 787
BssNI	GRCGYC	2 cut(s)	55, 462
Bst2UI	CCWGG	1 cut(s)	540
BstACI	GRCGYC	2 cut(s)	55, 462
BstAUI	TGTACA	1 cut(s)	756
BstC8I	GCNNGC	5 cut(s)	59, 283, 306, 596, 717
BstDEI	CTNAG	4 cut(s)	102, 202, 288, 630
BstF5I	GGATG	5 cut(s)	133, 259, 268, 641, 715
BstH2I	RGCGCY	1 cut(s)	531
BstHHI	GCGC	1 cut(s)	530
BstKTI	GATC	4 cut(s)	360, 688, 778, 790
BstMAI	GTCTC	3 cut(s)	194, 205, 510
BstMBI	GATC	4 cut(s)	357, 685, 775, 787
BstMWI	GCNNNNNNNGC	3 cut(s)	611, 668, 689
BstNI	CCWGG	1 cut(s)	540
BstSCI	CCNGG	1 cut(s)	538
BstSFI	CTRYAG	1 cut(s)	109
BstV1I	GCAGC	3 cut(s)	123, 359, 601
BstX2I	RGATCY	2 cut(s)	357, 787
BstXI	CCANNNNNNTGG	1 cut(s)	512
BstYI	RGATCY	2 cut(s)	357, 787
BsuRI	GGCC	3 cut(s)	145, 318, 441
BtgZI	GCGATG	1 cut(s)	71
BtsCI	GGATG	5 cut(s)	133, 259, 268, 641, 715
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	2 cut(s)	429, 795
Cac8I	GCNNGC	5 cut(s)	59, 283, 306, 596, 717
CfoI	GCGC	1 cut(s)	530
Cfr10I	RCCGGY	1 cut(s)	410
Cfr13I	GGNCC	4 cut(s)	144, 402, 440, 536
CseI	GACGC	3 cut(s)	63, 304, 451
Csp6I	GTAC	2 cut(s)	80, 757
CviAII	CATG	3 cut(s)	77, 370, 512
CviQI	GTAC	2 cut(s)	80, 757
DdeI	CTNAG	4 cut(s)	102, 202, 288, 630
DpnI	GATC	4 cut(s)	359, 687, 777, 789
DpnII	GATC	4 cut(s)	357, 685, 775, 787
DraIII	CACNNNGTG	1 cut(s)	399
DrdI	GACNNNNNNGTC	1 cut(s)	238
DseDI	GACNNNNNNGTC	1 cut(s)	238
Ecl136II	GAGCTC	2 cut(s)	382, 554
Eco24I	GRGCYC	2 cut(s)	384, 556
Eco47I	GGWCC	2 cut(s)	402, 536
Eco53kI	GAGCTC	2 cut(s)	382, 554
EcoICRI	GAGCTC	2 cut(s)	382, 554
EcoRII	CCWGG	1 cut(s)	538
EcoT38I	GRGCYC	2 cut(s)	384, 556
Esp3I	CGTCTC	1 cut(s)	205
FaeI	CATG	3 cut(s)	80, 373, 515
FaiI	YATR	6 cut(s)	78, 371, 513, 579, 773, 803
FalI	AAGNNNNNCTT	2 cut(s)	427, 459
FatI	CATG	3 cut(s)	76, 369, 511
Fnu4HI	GCNGC	3 cut(s)	112, 348, 615
FokI	GGATG	5 cut(s)	140, 266, 275, 628, 722
FriOI	GRGCYC	2 cut(s)	384, 556
Fsp4HI	GCNGC	3 cut(s)	112, 348, 615
FspBI	CTAG	1 cut(s)	305
GlaI	GCGC	1 cut(s)	529
GluI	GCNGC	3 cut(s)	112, 348, 615
HaeII	RGCGCY	1 cut(s)	531
HaeIII	GGCC	3 cut(s)	145, 318, 441
HapII	CCGG	2 cut(s)	411, 546
HgaI	GACGC	3 cut(s)	63, 304, 451
HhaI	GCGC	1 cut(s)	530
Hin1I	GRCGYC	2 cut(s)	55, 462
Hin1II	CATG	3 cut(s)	80, 373, 515
Hin6I	GCGC	1 cut(s)	528
HinP1I	GCGC	1 cut(s)	528
HincII	GTYRAC	1 cut(s)	227
HindII	GTYRAC	1 cut(s)	227
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	4 cut(s)	206, 239, 476, 674
HpaII	CCGG	2 cut(s)	411, 546
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	3 cut(s)	227, 405, 757
Hpy188I	TCNGA	7 cut(s)	19, 53, 205, 490, 633, 724, 833
Hpy188III	TCNNGA	2 cut(s)	355, 557
Hpy8I	GTNNAC	3 cut(s)	227, 405, 757
Hpy99I	CGWCG	4 cut(s)	57, 182, 298, 380
HpyAV	CCTTC	6 cut(s)	39, 220, 253, 308, 453, 628
HpyCH4IV	ACGT	1 cut(s)	809
HpyCH4V	TGCA	5 cut(s)	111, 387, 434, 617, 671
HpyF10VI	GCNNNNNNNGC	3 cut(s)	611, 668, 689
HpyF3I	CTNAG	4 cut(s)	102, 202, 288, 630
HpySE526I	ACGT	1 cut(s)	809
Hsp92I	GRCGYC	2 cut(s)	55, 462
Hsp92II	CATG	3 cut(s)	80, 373, 515
HspAI	GCGC	1 cut(s)	528
Kzo9I	GATC	4 cut(s)	357, 685, 775, 787
LmnI	GCTCC	3 cut(s)	54, 551, 736
Lsp1109I	GCAGC	3 cut(s)	123, 359, 601
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	1 cut(s)	809
MalI	GATC	4 cut(s)	359, 687, 777, 789
MboI	GATC	4 cut(s)	357, 685, 775, 787
MboII	GAAGA	5 cut(s)	344, 471, 474, 477, 492
MflI	RGATCY	2 cut(s)	357, 787
MhlI	GDGCHC	2 cut(s)	384, 556
MluCI	AATT	5 cut(s)	34, 272, 618, 696, 764
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	3 cut(s)	42, 76, 687
MseI	TTAA	3 cut(s)	11, 66, 275
MslI	CAYNNNNRTG	2 cut(s)	119, 510
MspI	CCGG	2 cut(s)	411, 546
MspR9I	CCNGG	1 cut(s)	540
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	3 cut(s)	611, 668, 689
NdeII	GATC	4 cut(s)	357, 685, 775, 787
NheI	GCTAGC	1 cut(s)	304
NlaIII	CATG	3 cut(s)	80, 373, 515
NlaIV	GGNNCC	2 cut(s)	415, 544
PfeI	GAWTC	3 cut(s)	206, 476, 674
PflMI	CCANNNNNTGG	1 cut(s)	399
PkrI	GCNGC	3 cut(s)	113, 349, 616
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
Psp124BI	GAGCTC	2 cut(s)	384, 556
Psp6I	CCWGG	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	2 cut(s)	415, 544
PspPI	GGNCC	4 cut(s)	144, 402, 440, 536
PstI	CTGCAG	1 cut(s)	113
PsuI	RGATCY	2 cut(s)	357, 787
RsaI	GTAC	2 cut(s)	81, 758
RsaNI	GTAC	2 cut(s)	80, 757
RseI	CAYNNNNRTG	2 cut(s)	119, 510
SacI	GAGCTC	2 cut(s)	384, 556
SaqAI	TTAA	3 cut(s)	11, 66, 275
SatI	GCNGC	3 cut(s)	112, 348, 615
Sau3AI	GATC	4 cut(s)	357, 685, 775, 787
Sau96I	GGNCC	4 cut(s)	144, 402, 440, 536
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	540
SduI	GDGCHC	2 cut(s)	384, 556
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	109
SinI	GGWCC	2 cut(s)	402, 536
SmiMI	CAYNNNNRTG	2 cut(s)	119, 510
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
Sse9I	AATT	5 cut(s)	34, 272, 618, 696, 764
SsiI	CCGC	1 cut(s)	417
SspMI	CTAG	1 cut(s)	305
SstI	GAGCTC	2 cut(s)	384, 556
StyD4I	CCNGG	1 cut(s)	538
TaiI	ACGT	1 cut(s)	812
TaqI	TCGA	3 cut(s)	242, 342, 568
TasI	AATT	5 cut(s)	34, 272, 618, 696, 764
TatI	WGTACW	1 cut(s)	756
TfiI	GAWTC	3 cut(s)	206, 476, 674
Tru1I	TTAA	3 cut(s)	11, 66, 275
Tru9I	TTAA	3 cut(s)	11, 66, 275
TscAI	CASTG	2 cut(s)	436, 802
TseI	GCWGC	3 cut(s)	111, 347, 614
TspDTI	ATGAA	3 cut(s)	65, 285, 386
TspGWI	ACGGA	2 cut(s)	140, 817
TspRI	CASTG	2 cut(s)	436, 802
Van91I	CCANNNNNTGG	1 cut(s)	399
VpaK11BI	GGWCC	2 cut(s)	402, 536
XapI	RAATTY	1 cut(s)	764
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.