pycom15g01700

Glucose-induced degradation protein 8 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012908
Physical Location & Seq
Reverse (-)
989613 .. 991645
2033 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 648 bp
ATGGACGTCGATCCTCGTCACTTCAATCAAGTTGCTATCAATGACAATGATATCCACAATATTGTTTTGTCATACCTTGTGCATAACTGCTATAAAGAAACTGTGGAGTCGTTTGTTGCTTCGACGGGGACGAAGCAGCCTGCCGACTGCGTTGAGGATATGGAGAAAAGAAATAGGATTTTTCAATGTGCAGTGGAAGGGGAAGCTCTTAAGGCGATTGAACTGACGGAAGAGTTGGCACCTGACTTAGTGGAGAAAAACAAAGACTTGCATTTTGACCTTCTGAGCCTGCACTTTGTTGAACTTGTTTGCGCTAAAAAATGCACAGAAGCTTTGGAATTTGCCCAGAACAAGTTGACCCCCTTTGGGAAGGTGGAAAAATATGTCACAAAGCTTGAAGACTTCATGGCTCTGCTTGCTTATAAAGAACCGGAGAAGTCTCCTATGTTTCATTTGCTTAGCTTTGAGTATCGGCAGCAAGTTGCAGATAGTTTGAATCGAGCAGTTCTTGAGCATTCGAACCTGCCCAATTATTCCGCAATGGAAAGGCTAATACAACAGACCACTGTAGTTAGACAATGCATGAGTGAAGATAATGCCAAGAATGGGAACCCCCCATTTTCTCTGAATGATTTTCTTAGAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLTH

Protein Analysis

216

Amino Acids

24.65

Weight (kDa)

5.11

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTLH PF10607 54 - 192 1.2e-32 CTLH/CRA C-terminal to LisH motif domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012908)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06060 AT1G06060
fragaria_vesca FvH4_2g38860
malus_domestica MD08G1023000.v1.1 MD15G1020700.v1.1
prunus_persica Prupe.1G372300_v2.0.a1 Prupe.1G372300_v2.0.a1
pyrus_communis pycom08g01800 pycom15g01700
rosa_chinensis RchiOBHm_Chr6g0301961
rosa_laevigata RLG00000011207
rosa_multiflora Rmu_co8505221.1_g000001
rosa_roxburghii Rroxscaffold_7G00166240
rosa_rugosa Rorug06G0310600 Rorug06G0310600
rosa_samantha Rh6AG423000 Rh6BG429800
rosa_wichuraiana Rw6G036650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 423
AatII GACGTC 1 cut(s) 9
Acc36I ACCTGC 1 cut(s) 531
AccB1I GGYRCC 1 cut(s) 238
AciI CCGC 1 cut(s) 537
AclWI GGATC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 338
AcyI GRCGYC 1 cut(s) 6
AfiI CCNNNNNNNGG 2 cut(s) 366, 606
AflII CTTAAG 1 cut(s) 209
AgsI TTSAA 6 cut(s) 25, 185, 221, 302, 398, 496
AluBI AGCT 5 cut(s) 206, 332, 394, 462, 645
AluI AGCT 5 cut(s) 206, 332, 394, 462, 645
Alw26I GTCTC 1 cut(s) 444
AlwI GGATC 1 cut(s) 5
ApeKI GCWGC 2 cut(s) 136, 475
ApoI RAATTY 1 cut(s) 338
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
AspLEI GCGC 1 cut(s) 314
AsuII TTCGAA 1 cut(s) 518
BanI GGYRCC 1 cut(s) 238
BbsI GAAGAC 1 cut(s) 405
BbvI GCAGC 2 cut(s) 148, 487
BcoDI GTCTC 1 cut(s) 444
BfmI CTRYAG 1 cut(s) 567
BfrI CTTAAG 1 cut(s) 209
BfuAI ACCTGC 1 cut(s) 531
BisI GCNGC 2 cut(s) 137, 476
BlpI GCTNAGC 1 cut(s) 458
BlsI GCNGC 2 cut(s) 138, 477
BmiI GGNNCC 2 cut(s) 240, 611
BpiI GAAGAC 1 cut(s) 405
Bpu1102I GCTNAGC 1 cut(s) 458
Bpu14I TTCGAA 1 cut(s) 518
BpuEI CTTGAG 1 cut(s) 530
BsaHI GRCGYC 1 cut(s) 6
BsaWI WCCGGW 1 cut(s) 430
Bsc4I CCNNNNNNNGG 2 cut(s) 366, 606
Bse3DI GCAATG 1 cut(s) 546
BseLI CCNNNNNNNGG 2 cut(s) 366, 606
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 1 cut(s) 275
BseXI GCAGC 2 cut(s) 148, 487
BsgI GTGCAG 2 cut(s) 210, 275
BshNI GGYRCC 1 cut(s) 238
BsiSI CCGG 1 cut(s) 431
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 2 cut(s) 366, 606
BsmAI GTCTC 1 cut(s) 444
BsmFI GGGAC 1 cut(s) 142
BsmI GAATGC 1 cut(s) 514
Bsp119I TTCGAA 1 cut(s) 518
Bsp143I GATC 1 cut(s) 10
Bsp1720I GCTNAGC 1 cut(s) 458
BspACI CCGC 1 cut(s) 537
BspCNI CTCAG 1 cut(s) 276
BspLI GGNNCC 2 cut(s) 240, 611
BspMI ACCTGC 1 cut(s) 531
BspPI GGATC 1 cut(s) 5
BspT104I TTCGAA 1 cut(s) 518
BspT107I GGYRCC 1 cut(s) 238
BspTI CTTAAG 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 546
BssMI GATC 1 cut(s) 10
BssNI GRCGYC 1 cut(s) 6
Bst4CI ACNGT 2 cut(s) 103, 568
Bst6I CTCTTC 1 cut(s) 225
BstACI GRCGYC 1 cut(s) 6
BstAFI CTTAAG 1 cut(s) 209
BstBI TTCGAA 1 cut(s) 518
BstC8I GCNNGC 3 cut(s) 141, 290, 417
BstDEI CTNAG 4 cut(s) 247, 284, 458, 638
BstHHI GCGC 1 cut(s) 314
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 444
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 2 cut(s) 212, 416
BstSFI CTRYAG 1 cut(s) 567
BstV1I GCAGC 2 cut(s) 148, 487
BstV2I GAAGAC 1 cut(s) 405
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 2 cut(s) 198, 564
BveI ACCTGC 1 cut(s) 531
Cac8I GCNNGC 3 cut(s) 141, 290, 417
CfoI GCGC 1 cut(s) 314
CviAII CATG 2 cut(s) 406, 583
CviJI RGCY 9 cut(s) 139, 206, 288, 332, 394, 410, 462, 550, 645
CviKI_1 RGCY 9 cut(s) 139, 206, 288, 332, 394, 410, 462, 550, 645
DdeI CTNAG 4 cut(s) 247, 284, 458, 638
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco32I GATATC 1 cut(s) 52
EcoRV GATATC 1 cut(s) 52
EcoT22I ATGCAT 1 cut(s) 584
FaeI CATG 2 cut(s) 409, 586
FaiI YATR 9 cut(s) 73, 84, 93, 161, 384, 407, 423, 446, 584
FaqI GGGAC 1 cut(s) 142
FatI CATG 2 cut(s) 405, 582
Fnu4HI GCNGC 2 cut(s) 137, 476
Fsp4HI GCNGC 2 cut(s) 137, 476
GlaI GCGC 1 cut(s) 313
GluI GCNGC 2 cut(s) 137, 476
HapII CCGG 1 cut(s) 431
HhaI GCGC 1 cut(s) 314
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 2 cut(s) 409, 586
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HincII GTYRAC 1 cut(s) 357
HindII GTYRAC 1 cut(s) 357
HindIII AAGCTT 2 cut(s) 330, 392
HinfI GANTC 2 cut(s) 107, 496
HpaII CCGG 1 cut(s) 431
Hpy166II GTNNAC 1 cut(s) 357
Hpy188I TCNGA 2 cut(s) 285, 627
Hpy188III TCNNGA 1 cut(s) 509
Hpy8I GTNNAC 1 cut(s) 357
Hpy99I CGWCG 2 cut(s) 11, 127
HpyAV CCTTC 3 cut(s) 191, 290, 364
HpyCH4III ACNGT 2 cut(s) 103, 568
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 7 cut(s) 82, 191, 271, 292, 324, 485, 582
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 416
HpyF3I CTNAG 4 cut(s) 247, 284, 458, 638
HpySE526I ACGT 1 cut(s) 6
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 2 cut(s) 409, 586
HspAI GCGC 1 cut(s) 312
Kzo9I GATC 1 cut(s) 10
LpnPI CCDG 6 cut(s) 153, 255, 302, 359, 444, 536
Lsp1109I GCAGC 2 cut(s) 148, 487
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 2 cut(s) 17, 385
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 3 cut(s) 242, 410, 602
MluCI AATT 2 cut(s) 338, 529
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 2 cut(s) 24, 148
Mph1103I ATGCAT 1 cut(s) 584
MseI TTAA 1 cut(s) 210
MspCI CTTAAG 1 cut(s) 209
MspI CCGG 1 cut(s) 431
Mva1269I GAATGC 1 cut(s) 514
MwoI GCNNNNNNNGC 2 cut(s) 212, 416
NdeII GATC 1 cut(s) 10
NlaIII CATG 2 cut(s) 409, 586
NlaIV GGNNCC 2 cut(s) 240, 611
NmuCI GTSAC 2 cut(s) 17, 385
NsiI ATGCAT 1 cut(s) 584
NspV TTCGAA 1 cut(s) 518
PcsI WCGNNNNNNNCGW 1 cut(s) 128
PctI GAATGC 1 cut(s) 514
PfeI GAWTC 1 cut(s) 496
PkrI GCNGC 2 cut(s) 138, 477
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PsiI TTATAA 1 cut(s) 423
PspN4I GGNNCC 2 cut(s) 240, 611
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 2 cut(s) 137, 476
Sau3AI GATC 1 cut(s) 10
SchI GAGTC 1 cut(s) 116
SfcI CTRYAG 1 cut(s) 567
SfuI TTCGAA 1 cut(s) 518
SmlI CTYRAG 2 cut(s) 209, 509
SmoI CTYRAG 2 cut(s) 209, 509
Sse9I AATT 2 cut(s) 338, 529
SsiI CCGC 1 cut(s) 537
SspI AATATT 1 cut(s) 61
TaaI ACNGT 2 cut(s) 103, 568
TaiI ACGT 1 cut(s) 9
TaqI TCGA 4 cut(s) 9, 122, 499, 518
TasI AATT 2 cut(s) 338, 529
TfiI GAWTC 1 cut(s) 496
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 2 cut(s) 198, 571
TseFI GTSAC 2 cut(s) 17, 385
TseI GCWGC 2 cut(s) 136, 475
Tsp45I GTSAC 2 cut(s) 17, 385
TspDTI ATGAA 2 cut(s) 394, 440
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 2 cut(s) 198, 571
Vha464I CTTAAG 1 cut(s) 209
XapI RAATTY 1 cut(s) 338
ZraI GACGTC 1 cut(s) 7
Zsp2I ATGCAT 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.