Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008564

Physical Location & Seq

Genomic Coordinates Forward (+)

1384622 .. 1386823

Gene Structure 2202 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGCAGTGGCTCGGTTAGCTCGGTTGGGCCGCCAAGCAAAACGGCCAGGTGGGTTCTGCATAAAAATGACGGCGGTGGCAATCTTGGGCCTCTGCTTTATATTCGTCTGGTCGATGTTTTCTTCTCCTTCCTCCTCCGTCACCACCCGAATCGAAAGCTTCGACAACATTGGGGCGTCGCCTGGATCAAAGAGCACCAGGGGGAGCACTCACAGTGGGACCCACCAAGTTGCTAGTAATGGTGGGGAGGAGAAAAGGGCTAATGGCTCTGCTGTGAGTTCACCTGCCCATGAGCATAAATACGAGAAGGAGAAGAAAGAAGAGGTAAATGGGAAGAAGGGGAAGGGTAAGAAAAAGTTACCAGAGAGTGTGGTGAAGGGTAAAAATGTGACCTTGGAATCCGAGAATGAAGATTCGGAGAGTGAAAAGGAAGATGGGGATGAAGAAAAGGAGGTGGTGGATGGAAAGGAAGAAGCTTTGGGTGATGAGAGTGAAGGAAATGGGGAAGCAGGGGGAGAGGGGGATAATTTGATGGAGACGATGGATAAGGAATCGGAGGAGGTGAAGCTGGAAGATGACGGTGGTGAATCCGAAAAAAGAGGGAAGAAGAGGTATAAGATGAAGGGTCCATTGTTTGATTCAAAAGCACATTATAGTTGGAAACAATGTAGCACAAGGAGCAAGCATAATTACATTCCTTGTATTGATATGGAAGTTGGATCTGGAAGGCTGCAGTATAGGCATACGGAGAGGAGTTGCCCGAAAGTGGAACCTATGTGTCTTGTACCTCTTCCCCGCGATGGATATGGCCCTCCGGTCCCCTGGCCTGAGAGCAAAGAGAAGATATTGTACAAGAATGTGGAGCATCCGAAACTGGCTGTATTCATCAAGGAACATAGTTGGGTGATGAAGTCTGGAGACTATCTGACTTTCCCTCAGAACCAGTCTGAATTGAAGGGTGGGATTCTTCACTATCTTGAGTCCATTGAAGAGATGGTACCAGACATCGAATGGGGAAAGAATATCCGTGTAGTGCTTGATATTGGATGTACAGATTCCACCTTTGGGGCTTCTCTTGTTGATAAGGATGTATTAACATTGGCATTGGGCTTGAAAGATGACCTAGTTGACCTAGCTCAAGTTGCCCTCGAACGTGGTTTTGCTGCTTTAGTTAGCCCTTTTCAAAATAGAAGGCTGCCTTTCCCCAGTGGTGTTTTTGATGCTGTTCACTGTGGCAGTTGCACCATACCTTGGCATTCAAATGGGGGTAAGCATCTTCTGGAGATGAATAGGATTTTAAGGCCAGGCGGATACTTTGTCTTGTCAACTAAACATGACAGCTTTGAAGAAGAAGAAGGTTTCCATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF21 Methyltransf_29

Protein Analysis

457

Amino Acids

50.37

Weight (kDa)

5.83

Isoelectric Point (pI)

53.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_29	PF03141	230 - 444	6.3e-78	Putative S-adenosyl-L-methionine-dependent methyltransferase
Methyltransf_11	PF08241	346 - 441	1.4e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19430 AT1G19430 AT1G19430
fragaria_vesca	FvH4_2g39800 FvH4_2g39800
malus_domestica	MD08G1031800.v1.1 MD15G1027700.v1.1
prunus_persica	Prupe.1G379400_v2.0.a1
pyrus_communis	pycom08g02510 pycom15g02360
rosa_chinensis	RchiOBHm_Chr6g0301041
rosa_laevigata	RLG00000011282
rosa_multiflora	Rmu_sc0003168.1_g000010 Rmu_sc0035551.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167230
rosa_rugosa	Rorug06G0300200 Rorug06G0300300 Rorug06G0300400 Rorug06G0300500
rosa_samantha	Rh6AG414100 Rh6BG421100 Rh6CG428700 Rh6DG414100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	292
Acc36I	ACCTGC	1 cut(s)	292
Acc65I	GGTACC	1 cut(s)	997
AccB1I	GGYRCC	1 cut(s)	997
AccB7I	CCANNNNNTGG	1 cut(s)	1251
AccII	CGCG	1 cut(s)	798
AciI	CCGC	4 cut(s)	31, 74, 796, 1308
AclWI	GGATC	2 cut(s)	193, 727
AcoI	YGGCCR	1 cut(s)	44
AcyI	GRCGYC	1 cut(s)	176
AfaI	GTAC	4 cut(s)	786, 851, 999, 1051
AfiI	CCNNNNNNNGG	4 cut(s)	766, 800, 1065, 1251
AgsI	TTSAA	7 cut(s)	642, 955, 989, 1114, 1184, 1260, 1346
AjnI	CCWGG	5 cut(s)	46, 181, 197, 821, 1303
AluBI	AGCT	6 cut(s)	20, 159, 476, 568, 1136, 1341
AluI	AGCT	6 cut(s)	20, 159, 476, 568, 1136, 1341
Alw21I	GWGCWC	2 cut(s)	197, 209
Alw26I	GTCTC	2 cut(s)	530, 912
AlwI	GGATC	2 cut(s)	193, 727
AoxI	GGCC	6 cut(s)	28, 44, 88, 808, 824, 1301
ApeKI	GCWGC	3 cut(s)	730, 1163, 1195
Asp718I	GGTACC	1 cut(s)	997
AspS9I	GGNCC	6 cut(s)	28, 88, 219, 626, 809, 817
AsuHPI	GGTGA	7 cut(s)	133, 273, 385, 494, 574, 596, 916
AvaII	GGWCC	3 cut(s)	219, 626, 817
BanI	GGYRCC	1 cut(s)	997
BarI	GAAGNNNNNNTAC	4 cut(s)	833, 865, 981, 1013
Bbv12I	GWGCWC	2 cut(s)	197, 209
BbvI	GCAGC	3 cut(s)	717, 1150, 1182
BccI	CCATC	6 cut(s)	428, 455, 526, 535, 794, 988
BceAI	ACGGC	2 cut(s)	59, 87
BciT130I	CCWGG	5 cut(s)	48, 183, 199, 823, 1305
BciVI	GTATCC	1 cut(s)	1304
BcoDI	GTCTC	2 cut(s)	530, 912
BfaI	CTAG	3 cut(s)	234, 1124, 1133
BfmI	CTRYAG	1 cut(s)	731
BfuAI	ACCTGC	1 cut(s)	292
BfuI	GTATCC	1 cut(s)	1304
BisI	GCNGC	4 cut(s)	31, 731, 1164, 1196
BlsI	GCNGC	4 cut(s)	32, 732, 1165, 1197
Bme1390I	CCNGG	5 cut(s)	48, 183, 199, 823, 1305
Bme18I	GGWCC	3 cut(s)	219, 626, 817
BmgT120I	GGNCC	6 cut(s)	28, 88, 219, 626, 809, 817
BmiI	GGNNCC	6 cut(s)	220, 221, 627, 771, 819, 999
BmrFI	CCNGG	5 cut(s)	48, 183, 199, 823, 1305
BmrI	ACTGGG	1 cut(s)	1200
BmsI	GCATC	3 cut(s)	874, 1210, 1282
BmuI	ACTGGG	1 cut(s)	1200
BpmI	CTGGAG	2 cut(s)	936, 1301
BpuEI	CTTGAG	2 cut(s)	998, 1122
BsaHI	GRCGYC	1 cut(s)	176
BsaJI	CCNNGG	5 cut(s)	198, 393, 821, 1250, 1363
BsaWI	WCCGGW	1 cut(s)	814
Bsc4I	CCNNNNNNNGG	4 cut(s)	766, 800, 1065, 1251
Bse1I	ACTGG	3 cut(s)	879, 943, 1206
BseBI	CCWGG	5 cut(s)	48, 183, 199, 823, 1305
BseDI	CCNNGG	5 cut(s)	198, 393, 821, 1250, 1363
BseGI	GGATG	5 cut(s)	445, 466, 865, 1052, 1093
BseLI	CCNNNNNNNGG	4 cut(s)	766, 800, 1065, 1251
BseMII	CTCAG	2 cut(s)	819, 950
BseNI	ACTGG	3 cut(s)	879, 943, 1206
BseRI	GAGGAG	4 cut(s)	124, 263, 572, 766
BseXI	GCAGC	3 cut(s)	717, 1150, 1182
Bsh1236I	CGCG	1 cut(s)	798
BshFI	GGCC	6 cut(s)	30, 46, 90, 810, 826, 1303
BshNI	GGYRCC	1 cut(s)	997
BsiHKAI	GWGCWC	2 cut(s)	197, 209
BsiSI	CCGG	1 cut(s)	815
BslFI	GGGAC	2 cut(s)	232, 803
BslI	CCNNNNNNNGG	4 cut(s)	766, 800, 1065, 1251
BsmAI	GTCTC	2 cut(s)	530, 912
BsmBI	CGTCTC	1 cut(s)	530
BsmFI	GGGAC	2 cut(s)	232, 803
BsmI	GAATGC	1 cut(s)	1255
BsnI	GGCC	6 cut(s)	30, 46, 90, 810, 826, 1303
Bsp1286I	GDGCHC	2 cut(s)	197, 209
Bsp1407I	TGTACA	2 cut(s)	849, 1049
Bsp143I	GATC	2 cut(s)	185, 719
Bsp19I	CCATGG	1 cut(s)	1363
BspACI	CCGC	4 cut(s)	31, 74, 796, 1308
BspANI	GGCC	6 cut(s)	30, 46, 90, 810, 826, 1303
BspCNI	CTCAG	2 cut(s)	820, 949
BspFNI	CGCG	1 cut(s)	798
BspLI	GGNNCC	6 cut(s)	220, 221, 627, 771, 819, 999
BspMAI	CTGCAG	1 cut(s)	735
BspMI	ACCTGC	1 cut(s)	292
BspPI	GGATC	2 cut(s)	193, 727
BspT107I	GGYRCC	1 cut(s)	997
BsrGI	TGTACA	2 cut(s)	849, 1049
BsrI	ACTGG	3 cut(s)	879, 943, 1206
BssECI	CCNNGG	5 cut(s)	198, 393, 821, 1250, 1363
BssMI	GATC	2 cut(s)	185, 719
BssNI	GRCGYC	1 cut(s)	176
BssT1I	CCWWGG	3 cut(s)	393, 1250, 1363
Bst2UI	CCWGG	5 cut(s)	48, 183, 199, 823, 1305
Bst4CI	ACNGT	3 cut(s)	215, 581, 1232
Bst6I	CTCTTC	4 cut(s)	315, 602, 795, 984
BstACI	GRCGYC	1 cut(s)	176
BstAUI	TGTACA	2 cut(s)	849, 1049
BstC8I	GCNNGC	1 cut(s)	683
BstDEI	CTNAG	2 cut(s)	828, 936
BstDSI	CCRYGG	1 cut(s)	1363
BstF5I	GGATG	5 cut(s)	445, 466, 865, 1052, 1093
BstFNI	CGCG	1 cut(s)	798
BstKTI	GATC	2 cut(s)	188, 722
BstMAI	GTCTC	2 cut(s)	530, 912
BstMBI	GATC	2 cut(s)	185, 719
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 678, 739, 1142
BstNI	CCWGG	5 cut(s)	48, 183, 199, 823, 1305
BstSCI	CCNGG	5 cut(s)	46, 181, 197, 821, 1303
BstSFI	CTRYAG	1 cut(s)	731
BstUI	CGCG	1 cut(s)	798
BstV1I	GCAGC	3 cut(s)	717, 1150, 1182
BstX2I	RGATCY	1 cut(s)	719
BstYI	RGATCY	1 cut(s)	719
BsuI	GTATCC	1 cut(s)	1304
BsuRI	GGCC	6 cut(s)	30, 46, 90, 810, 826, 1303
BtgI	CCRYGG	1 cut(s)	1363
BtgZI	GCGATG	1 cut(s)	813
BtsCI	GGATG	5 cut(s)	445, 466, 865, 1052, 1093
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	4 cut(s)	12, 220, 1213, 1228
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	1 cut(s)	683
Cfr13I	GGNCC	6 cut(s)	28, 88, 219, 626, 809, 817
CseI	GACGC	1 cut(s)	165
Csp6I	GTAC	4 cut(s)	785, 850, 998, 1050
CviAII	CATG	3 cut(s)	290, 1334, 1364
CviQI	GTAC	4 cut(s)	785, 850, 998, 1050
DdeI	CTNAG	2 cut(s)	828, 936
DpnI	GATC	2 cut(s)	187, 721
DpnII	GATC	2 cut(s)	185, 719
EaeI	YGGCCR	1 cut(s)	44
Eam1104I	CTCTTC	4 cut(s)	315, 602, 795, 984
EarI	CTCTTC	4 cut(s)	315, 602, 795, 984
EciI	GGCGGA	1 cut(s)	1323
Eco130I	CCWWGG	3 cut(s)	393, 1250, 1363
Eco47I	GGWCC	3 cut(s)	219, 626, 817
EcoO109I	RGGNCCY	1 cut(s)	219
EcoRII	CCWGG	5 cut(s)	46, 181, 197, 821, 1303
EcoT14I	CCWWGG	3 cut(s)	393, 1250, 1363
ErhI	CCWWGG	3 cut(s)	393, 1250, 1363
Esp3I	CGTCTC	1 cut(s)	530
FaeI	CATG	3 cut(s)	293, 1337, 1367
FalI	AAGNNNNNCTT	2 cut(s)	1183, 1215
FaqI	GGGAC	2 cut(s)	232, 803
FatI	CATG	3 cut(s)	289, 1333, 1363
FauI	CCCGC	1 cut(s)	803
Fnu4HI	GCNGC	4 cut(s)	31, 731, 1164, 1196
FokI	GGATG	5 cut(s)	452, 473, 852, 1059, 1100
Fsp4HI	GCNGC	4 cut(s)	31, 731, 1164, 1196
FspBI	CTAG	3 cut(s)	234, 1124, 1133
GluI	GCNGC	4 cut(s)	31, 731, 1164, 1196
GsuI	CTGGAG	2 cut(s)	936, 1301
HaeIII	GGCC	6 cut(s)	30, 46, 90, 810, 826, 1303
HapII	CCGG	1 cut(s)	815
HgaI	GACGC	1 cut(s)	165
Hin1I	GRCGYC	1 cut(s)	176
Hin1II	CATG	3 cut(s)	293, 1337, 1367
HincII	GTYRAC	2 cut(s)	1129, 1326
HindII	GTYRAC	2 cut(s)	1129, 1326
HindIII	AAGCTT	2 cut(s)	157, 474
HinfI	GANTC	9 cut(s)	150, 398, 413, 551, 587, 638, 964, 980, 1055
HpaII	CCGG	1 cut(s)	815
HphI	GGTGA	7 cut(s)	133, 273, 385, 494, 574, 596, 916
Hpy166II	GTNNAC	4 cut(s)	281, 1129, 1228, 1326
Hpy188I	TCNGA	8 cut(s)	403, 418, 556, 592, 870, 927, 939, 949
Hpy188III	TCNNGA	4 cut(s)	723, 915, 977, 1280
Hpy8I	GTNNAC	4 cut(s)	281, 1129, 1228, 1326
Hpy99I	CGWCG	1 cut(s)	181
HpyCH4III	ACNGT	3 cut(s)	215, 581, 1232
HpyCH4IV	ACGT	1 cut(s)	1153
HpyCH4V	TGCA	3 cut(s)	60, 733, 1242
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 678, 739, 1142
HpyF3I	CTNAG	2 cut(s)	828, 936
HpySE526I	ACGT	1 cut(s)	1153
Hsp92I	GRCGYC	1 cut(s)	176
Hsp92II	CATG	3 cut(s)	293, 1337, 1367
KflI	GGGWCCC	1 cut(s)	219
KpnI	GGTACC	1 cut(s)	1001
Kzo9I	GATC	2 cut(s)	185, 719
LmnI	GCTCC	3 cut(s)	204, 678, 862
Lsp1109I	GCAGC	3 cut(s)	717, 1150, 1182
LweI	GCATC	3 cut(s)	874, 1210, 1282
MaeI	CTAG	3 cut(s)	234, 1124, 1133
MaeII	ACGT	1 cut(s)	1153
MaeIII	GTNAC	3 cut(s)	139, 357, 388
MalI	GATC	2 cut(s)	187, 721
MboI	GATC	2 cut(s)	185, 719
MflI	RGATCY	1 cut(s)	719
MhlI	GDGCHC	2 cut(s)	197, 209
MluCI	AATT	3 cut(s)	526, 688, 950
MlyI	GAGTC	1 cut(s)	989
MmeI	TCCRAC	2 cut(s)	638, 697
MseI	TTAA	2 cut(s)	1094, 1298
MslI	CAYNNNNRTG	2 cut(s)	65, 1260
MspI	CCGG	1 cut(s)	815
MspR9I	CCNGG	5 cut(s)	48, 183, 199, 823, 1305
Mva1269I	GAATGC	1 cut(s)	1255
MvaI	CCWGG	5 cut(s)	48, 183, 199, 823, 1305
MvnI	CGCG	1 cut(s)	798
MwoI	GCNNNNNNNGC	4 cut(s)	17, 678, 739, 1142
NcoI	CCATGG	1 cut(s)	1363
NdeII	GATC	2 cut(s)	185, 719
NlaIII	CATG	3 cut(s)	293, 1337, 1367
NlaIV	GGNNCC	6 cut(s)	220, 221, 627, 771, 819, 999
NmuCI	GTSAC	2 cut(s)	139, 388
PaqCI	CACCTGC	1 cut(s)	292
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PctI	GAATGC	1 cut(s)	1255
PfeI	GAWTC	8 cut(s)	150, 398, 413, 551, 587, 638, 964, 1055
PflMI	CCANNNNNTGG	1 cut(s)	1251
PkrI	GCNGC	4 cut(s)	32, 732, 1165, 1197
PleI	GAGTC	1 cut(s)	988
PpsI	GAGTC	1 cut(s)	988
PpuMI	RGGWCCY	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	219
Psp6I	CCWGG	5 cut(s)	46, 181, 197, 821, 1303
PspGI	CCWGG	5 cut(s)	46, 181, 197, 821, 1303
PspN4I	GGNNCC	6 cut(s)	220, 221, 627, 771, 819, 999
PspPI	GGNCC	6 cut(s)	28, 88, 219, 626, 809, 817
PspPPI	RGGWCCY	1 cut(s)	219
PstI	CTGCAG	1 cut(s)	735
PsuI	RGATCY	1 cut(s)	719
RsaI	GTAC	4 cut(s)	786, 851, 999, 1051
RsaNI	GTAC	4 cut(s)	785, 850, 998, 1050
RseI	CAYNNNNRTG	2 cut(s)	65, 1260
SaqAI	TTAA	2 cut(s)	1094, 1298
SatI	GCNGC	4 cut(s)	31, 731, 1164, 1196
Sau3AI	GATC	2 cut(s)	185, 719
Sau96I	GGNCC	6 cut(s)	28, 88, 219, 626, 809, 817
SchI	GAGTC	1 cut(s)	989
ScrFI	CCNGG	5 cut(s)	48, 183, 199, 823, 1305
SduI	GDGCHC	2 cut(s)	197, 209
SfaNI	GCATC	3 cut(s)	874, 1210, 1282
SfcI	CTRYAG	1 cut(s)	731
SinI	GGWCC	3 cut(s)	219, 626, 817
SmiMI	CAYNNNNRTG	2 cut(s)	65, 1260
SmlI	CTYRAG	2 cut(s)	977, 1137
SmoI	CTYRAG	2 cut(s)	977, 1137
Sse9I	AATT	3 cut(s)	526, 688, 950
SsiI	CCGC	4 cut(s)	31, 74, 796, 1308
SspMI	CTAG	3 cut(s)	234, 1124, 1133
StyD4I	CCNGG	5 cut(s)	46, 181, 197, 821, 1303
StyI	CCWWGG	3 cut(s)	393, 1250, 1363
TaaI	ACNGT	3 cut(s)	215, 581, 1232
TaiI	ACGT	1 cut(s)	1156
TaqI	TCGA	5 cut(s)	113, 153, 162, 1008, 1149
TasI	AATT	3 cut(s)	526, 688, 950
TatI	WGTACW	2 cut(s)	849, 1049
TauI	GCSGC	1 cut(s)	33
TfiI	GAWTC	8 cut(s)	150, 398, 413, 551, 587, 638, 964, 1055
Tru1I	TTAA	2 cut(s)	1094, 1298
Tru9I	TTAA	2 cut(s)	1094, 1298
TscAI	CASTG	4 cut(s)	12, 220, 1213, 1235
TseFI	GTSAC	2 cut(s)	139, 388
TseI	GCWGC	3 cut(s)	730, 1163, 1195
Tsp45I	GTSAC	2 cut(s)	139, 388
TspDTI	ATGAA	6 cut(s)	423, 456, 635, 874, 923, 1301
TspGWI	ACGGA	3 cut(s)	127, 761, 1016
TspRI	CASTG	4 cut(s)	12, 220, 1213, 1235
Van91I	CCANNNNNTGG	1 cut(s)	1251
VpaK11BI	GGWCC	3 cut(s)	219, 626, 817
XcmI	CCANNNNNNNNNTGG	2 cut(s)	991, 1008
XspI	CTAG	3 cut(s)	234, 1124, 1133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.