Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008564

Physical Location & Seq

Genomic Coordinates Reverse (-)

45249593 .. 45252016

Gene Structure 2424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0300500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1749 bp

ATGGCTGATCCTCTGGTTGCTAGGTGCCTTTACTCTGGCAAAGGTTATATGATTCCTTTGAATCAATGCATGAGCTACTCTGAGTTGTATGAAGACATTTTCCGTACATTCCAGTTTTTGCCAAGTGATATTATTGAGCTTCAGTATTCAGTTCCAGGTTGTGAAGTTTGTTTTCTTCGTAACGATCGTGATTTCCAGATGCTGTTTTGCTCTGCTAGAATACATAGGTTAGAGTGTGTCGATATTTCAGTTTTAAAGATTGGGGGAGGTTGTAGGAGAACTTGTTCTGTGGATAGTGGGTCGGAAGTGATTGATGAAGATGATTATTTGGGTGATGCATTCAGGACTGAAGTTCACAAGACGTATTTGTCTGATGAGTGGAGTTCTTATATTCATCATGTCGGGGATAAGTTTCATGGTGCTTCTGAGCTCCGTGAGAAGCTCAGGAAGTATGCAATTGCAGTTGGTTTCGAGTTTGTTTTGCTGAGAAATGATTTGGACCGTATTCATGCAGTCTGTGCAAATGTTGGAACCGAAGGATGTGAATGGCATCTTCGTGCTTTTTCATCATCTGCCAATGGTTGCCTTTACATAACAGAGTTGAATAATATTCACACTTGCAAGGGTGTAGTTAGGACTCAAAAGCACAAGCTTTTGGGATCCAAGGTTGTCAAGACTTGCATTGCTGCTGATGTTAGCTATAATCTTTCATTGACGCCAAGGGAGATTATGAGCAAGTTCCAATCAACTTATGGGTTTGATATTTCCTACAAGGTTGCCTTGAAAGCAAAGCATCGGGCTAAGGAAGCGATTTATGGTTCCGATGCAGACACGTTTAGCAAGTTATCTTGGTATAAGGAAGCTGTTTTGCAGAGTAATCCCGGCTCTTCTTTTGTGTTGGAAGTTGAACCATCGACAAATCGTTTTCAGAGGCTTTTCGTAGCTTACGGAGGTTGTGTAGAAGGGTTTCAATTCTGTTTGCCTGTGTTGTATGTTGATGGAACGTTTGGTAAGAGCATTTACAAGGGGCAGATTCTGTCTGCAACTGGAAGGAATGGGAATCAAGTTTCTTTCATTGTGATAGATATCATTTTTACATTGCTGTGCGACGCTGTGATAGGAAGAGTTATCACATTTATTAGTGATCGGGGTGTTGGATTGTTGAGTGCTTTTGATAAGGTATTTGCTGGTAATCCTCATCTGTTTTGTTACAAGCACTTGGTGGCGAACCTTGCCGGTAAATATAGGGGTAAAGGTAATTCAAAATTGATTGAAGATGTTAAGCAGAAGTTTTTTAAGGTTGCATATTCCTCTACTGAGAAGGAATACCGTTTCAATTTGCGGTTGCTTAGAGCAGTTGGTGGTGCCGATATTATTGACCCTTTTCTTGCTGAATTGCCTGTGGAAAATTGGTGCCGTGCATTTTATACTAGTTGCCGATATGGAATTATGGCTAATGGGATTGCTGAATCATTTAACTCTTGGATTGCAATTGAGCGTTTGATGCCAGTCTATTGTATGCTGGACCAGACAAGAATTAAACAAATGGAGATGGCCGGTAAGAGGAGGGAAGAGGCAGAACGTTGGACCACAGAACTAACTCCCAAAATGGAGGAAAGATTGAAGGTGCAAATGGAGAAATCTCGTCGTTTCAGTGTCCATTATTCTAGCCCTGGAGTTTATGAGAATCTGCTTCTGAATGTATATTACCTCCCCTTTCGAAGAGGCCCCCCGGGAGGCCTAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016740 GO:0016741 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

582

Amino Acids

65.99

Weight (kDa)

8.45

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DBD_Tnp_Mut	PF03108	133 - 194	1.5e-08	MuDR family transposase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19430 AT1G19430 AT1G19430
fragaria_vesca	FvH4_2g39800 FvH4_2g39800
malus_domestica	MD08G1031800.v1.1 MD15G1027700.v1.1
prunus_persica	Prupe.1G379400_v2.0.a1
pyrus_communis	pycom08g02510 pycom15g02360
rosa_chinensis	RchiOBHm_Chr6g0301041
rosa_laevigata	RLG00000011282
rosa_multiflora	Rmu_sc0003168.1_g000010 Rmu_sc0035551.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167230
rosa_rugosa	Rorug06G0300200 Rorug06G0300300 Rorug06G0300400 Rorug06G0300500
rosa_samantha	Rh6AG414100 Rh6BG421100 Rh6CG428700 Rh6DG414100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	367
AccB1I	GGYRCC	3 cut(s)	24, 1364, 1413
AciI	CCGC	1 cut(s)	1342
AclI	AACGTT	2 cut(s)	1004, 1582
AclWI	GGATC	3 cut(s)	2, 654, 667
AcoI	YGGCCR	1 cut(s)	1554
AcuI	CTGAAG	2 cut(s)	125, 369
AcyI	GRCGYC	1 cut(s)	716
AdeI	CACNNNGTG	1 cut(s)	1222
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	2 cut(s)	1563, 1736
AflIII	ACRYGT	1 cut(s)	831
AgsI	TTSAA	9 cut(s)	61, 604, 784, 908, 971, 1263, 1274, 1336, 1624
AhlI	ACTAGT	1 cut(s)	1430
AjnI	CCWGG	2 cut(s)	154, 1672
AloI	GAACNNNNNNTCC	2 cut(s)	268, 300
AluBI	AGCT	8 cut(s)	75, 139, 430, 442, 652, 699, 863, 944
AluI	AGCT	8 cut(s)	75, 139, 430, 442, 652, 699, 863, 944
Alw21I	GWGCWC	1 cut(s)	432
AlwI	GGATC	3 cut(s)	2, 654, 667
AlwNI	CAGNNNCTG	2 cut(s)	202, 1036
Ama87I	CYCGRG	1 cut(s)	1732
AoxI	GGCC	3 cut(s)	1554, 1726, 1738
ApeKI	GCWGC	1 cut(s)	686
Asp700I	GAANNNNTTC	2 cut(s)	283, 966
AspA2I	CCTAGG	1 cut(s)	1741
AspS9I	GGNCC	4 cut(s)	499, 1525, 1587, 1727
AsuC2I	CCSGG	3 cut(s)	882, 1733, 1734
AsuHPI	GGTGA	1 cut(s)	344
AsuII	TTCGAA	1 cut(s)	1720
AvaI	CYCGRG	1 cut(s)	1732
AvaII	GGWCC	3 cut(s)	499, 1525, 1587
AvrII	CCTAGG	1 cut(s)	1741
BamHI	GGATCC	1 cut(s)	659
BanI	GGYRCC	3 cut(s)	24, 1364, 1413
BanII	GRGCYC	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	673
BccI	CCATC	3 cut(s)	919, 992, 1546
BceAI	ACGGC	1 cut(s)	1401
BciT130I	CCWGG	2 cut(s)	156, 1674
BcnI	CCSGG	3 cut(s)	882, 1733, 1734
BcuI	ACTAGT	1 cut(s)	1430
BfaI	CTAG	5 cut(s)	21, 216, 1431, 1668, 1742
BisI	GCNGC	1 cut(s)	687
BlnI	CCTAGG	1 cut(s)	1741
BlsI	GCNGC	1 cut(s)	688
Bme1390I	CCNGG	5 cut(s)	156, 882, 1674, 1733, 1734
Bme18I	GGWCC	3 cut(s)	499, 1525, 1587
BmeT110I	CYCGRG	1 cut(s)	1732
BmgT120I	GGNCC	4 cut(s)	499, 1525, 1587, 1727
BmiI	GGNNCC	7 cut(s)	26, 532, 661, 820, 1366, 1415, 1729
BmrFI	CCNGG	5 cut(s)	156, 882, 1674, 1733, 1734
BmsI	GCATC	6 cut(s)	189, 325, 559, 802, 814, 1494
BpiI	GAAGAC	1 cut(s)	99
BpmI	CTGGAG	1 cut(s)	1695
Bpu10I	CCTNAGC	2 cut(s)	443, 801
Bpu14I	TTCGAA	1 cut(s)	1720
BpuMI	CCSGG	3 cut(s)	882, 1733, 1734
BsaBI	GATNNNNATC	1 cut(s)	1085
BsaHI	GRCGYC	1 cut(s)	716
BsaJI	CCNNGG	6 cut(s)	663, 719, 1672, 1731, 1732, 1741
BsaXI	ACNNNNNCTCC	4 cut(s)	268, 298, 942, 972
Bsc4I	CCNNNNNNNGG	2 cut(s)	1563, 1736
Bse118I	RCCGGY	2 cut(s)	1235, 1556
Bse1I	ACTGG	3 cut(s)	112, 1051, 1508
Bse3DI	GCAATG	2 cut(s)	681, 1097
Bse8I	GATNNNNATC	1 cut(s)	1085
BseBI	CCWGG	2 cut(s)	156, 1674
BseDI	CCNNGG	6 cut(s)	663, 719, 1672, 1731, 1732, 1741
BseGI	GGATG	1 cut(s)	545
BseJI	GATNNNNATC	1 cut(s)	1085
BseLI	CCNNNNNNNGG	2 cut(s)	1563, 1736
BseMI	GCAATG	2 cut(s)	681, 1097
BseMII	CTCAG	5 cut(s)	72, 417, 457, 476, 1308
BseNI	ACTGG	3 cut(s)	112, 1051, 1508
BseRI	GAGGAG	1 cut(s)	1579
BseXI	GCAGC	1 cut(s)	673
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	3 cut(s)	1556, 1728, 1740
BshNI	GGYRCC	3 cut(s)	24, 1364, 1413
BsiEI	CGRYCG	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	432
BsiHKCI	CYCGRG	1 cut(s)	1732
BsiSI	CCGG	4 cut(s)	882, 1236, 1557, 1733
BslI	CCNNNNNNNGG	2 cut(s)	1563, 1736
BsmI	GAATGC	1 cut(s)	338
BsnI	GGCC	3 cut(s)	1556, 1728, 1740
BsoBI	CYCGRG	1 cut(s)	1732
Bsp119I	TTCGAA	1 cut(s)	1720
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	4 cut(s)	7, 184, 659, 1144
BspACI	CCGC	1 cut(s)	1342
BspANI	GGCC	3 cut(s)	1556, 1728, 1740
BspCNI	CTCAG	5 cut(s)	73, 418, 456, 477, 1309
BspLI	GGNNCC	7 cut(s)	26, 532, 661, 820, 1366, 1415, 1729
BspPI	GGATC	3 cut(s)	2, 654, 667
BspQI	GCTCTTC	1 cut(s)	892
BspT104I	TTCGAA	1 cut(s)	1720
BspT107I	GGYRCC	3 cut(s)	24, 1364, 1413
BsrDI	GCAATG	2 cut(s)	681, 1097
BsrFI	RCCGGY	2 cut(s)	1235, 1556
BsrI	ACTGG	3 cut(s)	112, 1051, 1508
BssAI	RCCGGY	2 cut(s)	1235, 1556
BssECI	CCNNGG	6 cut(s)	663, 719, 1672, 1731, 1732, 1741
BssMI	GATC	4 cut(s)	7, 184, 659, 1144
BssNI	GRCGYC	1 cut(s)	716
BssT1I	CCWWGG	3 cut(s)	663, 719, 1741
Bst2UI	CCWGG	2 cut(s)	156, 1674
Bst4CI	ACNGT	2 cut(s)	503, 1331
Bst6I	CTCTTC	4 cut(s)	892, 1117, 1566, 1717
BstACI	GRCGYC	1 cut(s)	716
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstBI	TTCGAA	1 cut(s)	1720
BstDEI	CTNAG	7 cut(s)	81, 426, 443, 485, 801, 1317, 1349
BstF5I	GGATG	1 cut(s)	545
BstKTI	GATC	4 cut(s)	10, 187, 662, 1147
BstMBI	GATC	4 cut(s)	7, 184, 659, 1144
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	5 cut(s)	518, 785, 806, 1232, 1504
BstNI	CCWGG	2 cut(s)	156, 1674
BstSCI	CCNGG	5 cut(s)	154, 880, 1672, 1731, 1732
BstV1I	GCAGC	1 cut(s)	673
BstV2I	GAAGAC	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	659
BstYI	RGATCY	1 cut(s)	659
BsuRI	GGCC	3 cut(s)	1556, 1728, 1740
BtsCI	GGATG	1 cut(s)	545
BtsIMutI	CAGTG	1 cut(s)	1660
CaiI	CAGNNNCTG	2 cut(s)	202, 1036
Cfr10I	RCCGGY	2 cut(s)	1235, 1556
Cfr13I	GGNCC	4 cut(s)	499, 1525, 1587, 1727
Cfr9I	CCCGGG	1 cut(s)	1732
CseI	GACGC	2 cut(s)	724, 1118
Csp6I	GTAC	1 cut(s)	105
CviAII	CATG	4 cut(s)	70, 398, 416, 509
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	7 cut(s)	81, 426, 443, 485, 801, 1317, 1349
DpnI	GATC	4 cut(s)	9, 186, 661, 1146
DpnII	GATC	4 cut(s)	7, 184, 659, 1144
DraI	TTTAAA	1 cut(s)	255
DraIII	CACNNNGTG	1 cut(s)	1222
DrdI	GACNNNNNNGTC	1 cut(s)	367
DseDI	GACNNNNNNGTC	1 cut(s)	367
EaeI	YGGCCR	1 cut(s)	1554
Eam1104I	CTCTTC	4 cut(s)	892, 1117, 1566, 1717
EarI	CTCTTC	4 cut(s)	892, 1117, 1566, 1717
Ecl136II	GAGCTC	1 cut(s)	430
Eco130I	CCWWGG	3 cut(s)	663, 719, 1741
Eco147I	AGGCCT	1 cut(s)	1740
Eco24I	GRGCYC	1 cut(s)	432
Eco32I	GATATC	1 cut(s)	1087
Eco47I	GGWCC	3 cut(s)	499, 1525, 1587
Eco53kI	GAGCTC	1 cut(s)	430
Eco57I	CTGAAG	2 cut(s)	125, 369
Eco88I	CYCGRG	1 cut(s)	1732
EcoICRI	GAGCTC	1 cut(s)	430
EcoO109I	RGGNCCY	1 cut(s)	1727
EcoRII	CCWGG	2 cut(s)	154, 1672
EcoRV	GATATC	1 cut(s)	1087
EcoT14I	CCWWGG	3 cut(s)	663, 719, 1741
EcoT22I	ATGCAT	2 cut(s)	71, 340
EcoT38I	GRGCYC	1 cut(s)	432
ErhI	CCWWGG	3 cut(s)	663, 719, 1741
FaeI	CATG	4 cut(s)	73, 401, 419, 512
FalI	AAGNNNNNCTT	2 cut(s)	764, 796
FatI	CATG	4 cut(s)	69, 397, 415, 508
Fnu4HI	GCNGC	1 cut(s)	687
FokI	GGATG	1 cut(s)	552
FriOI	GRGCYC	1 cut(s)	432
Fsp4HI	GCNGC	1 cut(s)	687
FspBI	CTAG	5 cut(s)	21, 216, 1431, 1668, 1742
GluI	GCNGC	1 cut(s)	687
GsuI	CTGGAG	1 cut(s)	1695
HaeIII	GGCC	3 cut(s)	1556, 1728, 1740
HapII	CCGG	4 cut(s)	882, 1236, 1557, 1733
HgaI	GACGC	2 cut(s)	724, 1118
Hin1I	GRCGYC	1 cut(s)	716
Hin1II	CATG	4 cut(s)	73, 401, 419, 512
HindIII	AAGCTT	1 cut(s)	650
HinfI	GANTC	7 cut(s)	52, 61, 637, 1033, 1060, 1469, 1687
HpaII	CCGG	4 cut(s)	882, 1236, 1557, 1733
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	7 cut(s)	82, 304, 373, 427, 823, 930, 1698
Hpy188III	TCNNGA	5 cut(s)	188, 196, 343, 445, 673
Hpy8I	GTNNAC	1 cut(s)	355
Hpy99I	CGWCG	2 cut(s)	1112, 1650
HpyAV	CCTTC	5 cut(s)	530, 956, 1044, 1315, 1618
HpyCH4III	ACNGT	2 cut(s)	503, 1331
HpyCH4IV	ACGT	4 cut(s)	362, 833, 1004, 1582
HpyF10VI	GCNNNNNNNGC	5 cut(s)	518, 785, 806, 1232, 1504
HpyF3I	CTNAG	7 cut(s)	81, 426, 443, 485, 801, 1317, 1349
HpySE526I	ACGT	4 cut(s)	362, 833, 1004, 1582
Hsp92I	GRCGYC	1 cut(s)	716
Hsp92II	CATG	4 cut(s)	73, 401, 419, 512
Kzo9I	GATC	4 cut(s)	7, 184, 659, 1144
LguI	GCTCTTC	1 cut(s)	892
LmnI	GCTCC	1 cut(s)	435
Lsp1109I	GCAGC	1 cut(s)	673
LweI	GCATC	6 cut(s)	189, 325, 559, 802, 814, 1494
MaeI	CTAG	5 cut(s)	21, 216, 1431, 1668, 1742
MaeII	ACGT	4 cut(s)	362, 833, 1004, 1582
MaeIII	GTNAC	2 cut(s)	179, 1208
MalI	GATC	4 cut(s)	9, 186, 661, 1146
MboI	GATC	4 cut(s)	7, 184, 659, 1144
MboII	GAAGA	9 cut(s)	104, 167, 329, 545, 879, 1134, 1286, 1583, 1734
MfeI	CAATTG	2 cut(s)	456, 1491
MflI	RGATCY	1 cut(s)	659
MhlI	GDGCHC	1 cut(s)	432
MlyI	GAGTC	1 cut(s)	631
MmeI	TCCRAC	5 cut(s)	282, 508, 879, 1135, 1565
Mph1103I	ATGCAT	2 cut(s)	71, 340
MroXI	GAANNNNTTC	2 cut(s)	283, 966
MseI	TTAA	5 cut(s)	254, 1281, 1296, 1476, 1539
MslI	CAYNNNNRTG	2 cut(s)	555, 1102
MspI	CCGG	4 cut(s)	882, 1236, 1557, 1733
MspR9I	CCNGG	5 cut(s)	156, 882, 1674, 1733, 1734
MunI	CAATTG	2 cut(s)	456, 1491
Mva1269I	GAATGC	1 cut(s)	338
MvaI	CCWGG	2 cut(s)	156, 1674
MwoI	GCNNNNNNNGC	5 cut(s)	518, 785, 806, 1232, 1504
NciI	CCSGG	3 cut(s)	882, 1733, 1734
NdeII	GATC	4 cut(s)	7, 184, 659, 1144
NlaIII	CATG	4 cut(s)	73, 401, 419, 512
NlaIV	GGNNCC	7 cut(s)	26, 532, 661, 820, 1366, 1415, 1729
NsiI	ATGCAT	2 cut(s)	71, 340
NspV	TTCGAA	1 cut(s)	1720
PceI	AGGCCT	1 cut(s)	1740
PciSI	GCTCTTC	1 cut(s)	892
PcsI	WCGNNNNNNNCGW	1 cut(s)	184
PctI	GAATGC	1 cut(s)	338
PdmI	GAANNNNTTC	2 cut(s)	283, 966
PfeI	GAWTC	6 cut(s)	52, 61, 1033, 1060, 1469, 1687
PkrI	GCNGC	1 cut(s)	688
Ple19I	CGATCG	1 cut(s)	187
PleI	GAGTC	1 cut(s)	631
PpsI	GAGTC	1 cut(s)	631
Psp124BI	GAGCTC	1 cut(s)	432
Psp1406I	AACGTT	2 cut(s)	1004, 1582
Psp6I	CCWGG	2 cut(s)	154, 1672
PspGI	CCWGG	2 cut(s)	154, 1672
PspN4I	GGNNCC	7 cut(s)	26, 532, 661, 820, 1366, 1415, 1729
PspPI	GGNCC	4 cut(s)	499, 1525, 1587, 1727
PstNI	CAGNNNCTG	2 cut(s)	202, 1036
PsuI	RGATCY	1 cut(s)	659
PvuI	CGATCG	1 cut(s)	187
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
RseI	CAYNNNNRTG	2 cut(s)	555, 1102
SacI	GAGCTC	1 cut(s)	432
SapI	GCTCTTC	1 cut(s)	892
SaqAI	TTAA	5 cut(s)	254, 1281, 1296, 1476, 1539
SatI	GCNGC	1 cut(s)	687
Sau3AI	GATC	4 cut(s)	7, 184, 659, 1144
Sau96I	GGNCC	4 cut(s)	499, 1525, 1587, 1727
SchI	GAGTC	1 cut(s)	631
ScrFI	CCNGG	5 cut(s)	156, 882, 1674, 1733, 1734
SduI	GDGCHC	1 cut(s)	432
SfaNI	GCATC	6 cut(s)	189, 325, 559, 802, 814, 1494
SfuI	TTCGAA	1 cut(s)	1720
SinI	GGWCC	3 cut(s)	499, 1525, 1587
SmaI	CCCGGG	1 cut(s)	1734
SmiMI	CAYNNNNRTG	2 cut(s)	555, 1102
SpeI	ACTAGT	1 cut(s)	1430
SseBI	AGGCCT	1 cut(s)	1740
SsiI	CCGC	1 cut(s)	1342
SspI	AATATT	1 cut(s)	610
SspMI	CTAG	5 cut(s)	21, 216, 1431, 1668, 1742
SstI	GAGCTC	1 cut(s)	432
StuI	AGGCCT	1 cut(s)	1740
StyD4I	CCNGG	5 cut(s)	154, 880, 1672, 1731, 1732
StyI	CCWWGG	3 cut(s)	663, 719, 1741
TaaI	ACNGT	2 cut(s)	503, 1331
TaiI	ACGT	4 cut(s)	365, 836, 1007, 1585
TaqI	TCGA	4 cut(s)	240, 471, 914, 1720
TfiI	GAWTC	6 cut(s)	52, 61, 1033, 1060, 1469, 1687
Tru1I	TTAA	5 cut(s)	254, 1281, 1296, 1476, 1539
Tru9I	TTAA	5 cut(s)	254, 1281, 1296, 1476, 1539
TscAI	CASTG	1 cut(s)	1660
TseI	GCWGC	1 cut(s)	686
TspDTI	ATGAA	8 cut(s)	105, 330, 383, 404, 497, 555, 699, 1063
TspGWI	ACGGA	3 cut(s)	92, 422, 963
TspMI	CCCGGG	1 cut(s)	1732
TspRI	CASTG	1 cut(s)	1660
VpaK11BI	GGWCC	3 cut(s)	499, 1525, 1587
XcmI	CCANNNNNNNNNTGG	1 cut(s)	749
XmaI	CCCGGG	1 cut(s)	1732
XmaJI	CCTAGG	1 cut(s)	1741
XmnI	GAANNNNTTC	2 cut(s)	283, 966
XspI	CTAG	5 cut(s)	21, 216, 1431, 1668, 1742
Zsp2I	ATGCAT	2 cut(s)	71, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.