Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008564

Physical Location & Seq

Genomic Coordinates Reverse (-)

45223434 .. 45225928

Gene Structure 2495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0300300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCGGAACAAGAAGCAGAGACCTCGAGCGGTATCAGAGTCAGTGGCATGCAATTCGCATACGACGCGCAACCGCCGCTCTTCTACGACTTCAGCCTCAACATTGCTCCCGGATCGCGGTGCCTTCTCGTCGGCGCCAACGGATCCGGGAAGACTACTCTGCTGAAGATTTTGGCGGGGAAGCAAATGGTGGGAGGGAGGGATGTGGTGCGGGTGTTGAATGGTTCGGCTTTTCATGACACTCATTTGGTTTGTAGCGGCGACTTGGCCTATTTGGGAGGCTCCTGGAGCAAAACTGTTGGCTGTGCTGGAGAGCTACCGCTCCAAGGAGACTTCTCTGCTGAACACATGATATTTGGAGTTGAAGGAACTGATCCGGTTAGGAGAGAAAAGTTGATTGAGCTGCTTGATATAGATCTGAAGTGGAGAATGCATAAAGTATCTGATGGGCAGCGACGCCGAGTGCAAATCTGCATGGGACTTCTGCATCCTTTCAAGGTTCTCTTGCTTGATGAGGTAACAGTCGACTTGGATGTTGTTGCTAGGATGGACTTATTGGATTTCTTCAAGGAAGAATGTGAGCAGAGAGGAGCTACAATTGTATACGCAACTCATATCTTTGATGGCTTGGAAACATGGGCAACCCATTTAGCTTACATCCAAGATGGTGAGCTAAAGAGGGCTCAGAAGTTATTGGAGGTTGAAGAGTTGAAGAGTTCAGTCAATCTGCTTTCTGTTGTGGAGTCCTGGCTTCGTGCTGAAACCAAGCAGGAGAAAAAGAAACCCAAAAATCCTGCCCAAACGTCATCTCCTTTTGGTATGTCGTCAAGACACATGGCGTATTACCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016740 GO:0016741 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

283

Amino Acids

31.52

Weight (kDa)

6.09

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	30 - 174	2.5e-15	ABC transporter
AAA_21	PF13304	141 - 205	8.3e-07	AAA domain, putative AbiEii toxin, Type IV TA system

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19430 AT1G19430 AT1G19430
fragaria_vesca	FvH4_2g39800 FvH4_2g39800
malus_domestica	MD08G1031800.v1.1 MD15G1027700.v1.1
prunus_persica	Prupe.1G379400_v2.0.a1
pyrus_communis	pycom08g02510 pycom15g02360
rosa_chinensis	RchiOBHm_Chr6g0301041
rosa_laevigata	RLG00000011282
rosa_multiflora	Rmu_sc0003168.1_g000010 Rmu_sc0035551.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167230
rosa_rugosa	Rorug06G0300200 Rorug06G0300300 Rorug06G0300400 Rorug06G0300500
rosa_samantha	Rh6AG414100 Rh6BG421100 Rh6CG428700 Rh6DG414100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	120, 134
AccBSI	CCGCTC	3 cut(s)	30, 79, 322
AccI	GTMKAC	2 cut(s)	525, 603
AccII	CGCG	2 cut(s)	68, 118
AclWI	GGATC	4 cut(s)	121, 138, 151, 368
AcuI	CTGAAG	3 cut(s)	76, 185, 440
AcyI	GRCGYC	2 cut(s)	135, 457
AfiI	CCNNNNNNNGG	2 cut(s)	117, 326
AgsI	TTSAA	6 cut(s)	220, 365, 496, 568, 704, 712
AjnI	CCWGG	2 cut(s)	284, 746
AluBI	AGCT	5 cut(s)	316, 403, 593, 653, 673
AluI	AGCT	5 cut(s)	316, 403, 593, 653, 673
Alw26I	GTCTC	2 cut(s)	14, 324
AlwI	GGATC	4 cut(s)	121, 138, 151, 368
Ama87I	CYCGRG	1 cut(s)	25
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	2 cut(s)	403, 451
AspLEI	GCGC	2 cut(s)	70, 137
AsuC2I	CCSGG	2 cut(s)	111, 148
AsuHPI	GGTGA	1 cut(s)	680
AvaI	CYCGRG	1 cut(s)	25
BamHI	GGATCC	1 cut(s)	143
BanI	GGYRCC	2 cut(s)	120, 134
BanII	GRGCYC	1 cut(s)	685
BbsI	GAAGAC	1 cut(s)	158
BbvI	GCAGC	2 cut(s)	390, 463
BccI	CCATC	4 cut(s)	440, 541, 617, 659
BcgI	CGANNNNNNTGC	4 cut(s)	6, 37, 40, 71
BciT130I	CCWGG	2 cut(s)	286, 748
BcnI	CCSGG	2 cut(s)	111, 148
BcoDI	GTCTC	2 cut(s)	14, 324
BfaI	CTAG	1 cut(s)	543
BfoI	RGCGCY	1 cut(s)	138
BglII	AGATCT	1 cut(s)	415
BisI	GCNGC	4 cut(s)	77, 259, 404, 452
BlsI	GCNGC	4 cut(s)	78, 260, 405, 453
Bme1390I	CCNGG	4 cut(s)	111, 148, 286, 748
BmeT110I	CYCGRG	1 cut(s)	25
BmiI	GGNNCC	4 cut(s)	122, 136, 145, 283
BmrFI	CCNGG	4 cut(s)	111, 148, 286, 748
BmsI	GCATC	1 cut(s)	496
BpiI	GAAGAC	1 cut(s)	158
BpmI	CTGGAG	2 cut(s)	307, 330
BpuMI	CCSGG	2 cut(s)	111, 148
BsaBI	GATNNNNATC	1 cut(s)	414
BsaHI	GRCGYC	2 cut(s)	135, 457
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	325
BsaWI	WCCGGW	1 cut(s)	376
BsaXI	ACNNNNNCTCC	2 cut(s)	793, 823
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 326
Bse3DI	GCAATG	1 cut(s)	102
Bse8I	GATNNNNATC	1 cut(s)	414
BseBI	CCWGG	2 cut(s)	286, 748
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	5 cut(s)	208, 487, 538, 552, 657
BseJI	GATNNNNATC	1 cut(s)	414
BseLI	CCNNNNNNNGG	2 cut(s)	117, 326
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	698
BseRI	GAGGAG	1 cut(s)	603
BseXI	GCAGC	2 cut(s)	390, 463
Bsh1236I	CGCG	2 cut(s)	68, 118
BshFI	GGCC	1 cut(s)	269
BshNI	GGYRCC	2 cut(s)	120, 134
BsiHKCI	CYCGRG	1 cut(s)	25
BsiSI	CCGG	3 cut(s)	111, 147, 377
BslFI	GGGAC	1 cut(s)	492
BslI	CCNNNNNNNGG	2 cut(s)	117, 326
BsmAI	GTCTC	2 cut(s)	14, 324
BsmFI	GGGAC	1 cut(s)	492
BsmI	GAATGC	1 cut(s)	435
BsnI	GGCC	1 cut(s)	269
Bso31I	GGTCTC	1 cut(s)	14
BsoBI	CYCGRG	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	685
Bsp143I	GATC	4 cut(s)	113, 143, 373, 415
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	1 cut(s)	697
BspFNI	CGCG	2 cut(s)	68, 118
BspHI	TCATGA	1 cut(s)	235
BspLI	GGNNCC	4 cut(s)	122, 136, 145, 283
BspPI	GGATC	4 cut(s)	121, 138, 151, 368
BspQI	GCTCTTC	1 cut(s)	86
BspT107I	GGYRCC	2 cut(s)	120, 134
BspTNI	GGTCTC	1 cut(s)	14
BsrBI	CCGCTC	3 cut(s)	30, 79, 322
BsrDI	GCAATG	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	4 cut(s)	113, 143, 373, 415
BssNAI	GTATAC	1 cut(s)	604
BssNI	GRCGYC	2 cut(s)	135, 457
BssT1I	CCWWGG	1 cut(s)	325
Bst1107I	GTATAC	1 cut(s)	604
Bst2UI	CCWGG	2 cut(s)	286, 748
Bst4CI	ACNGT	2 cut(s)	298, 523
Bst6I	CTCTTC	3 cut(s)	86, 699, 707
BstACI	GRCGYC	2 cut(s)	135, 457
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	684
BstF5I	GGATG	5 cut(s)	208, 487, 538, 552, 657
BstFNI	CGCG	2 cut(s)	68, 118
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	2 cut(s)	70, 137
BstKTI	GATC	4 cut(s)	116, 146, 376, 418
BstMAI	GTCTC	2 cut(s)	14, 324
BstMBI	GATC	4 cut(s)	113, 143, 373, 415
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 76, 288
BstNI	CCWGG	2 cut(s)	286, 748
BstNSI	RCATGY	1 cut(s)	52
BstSCI	CCNGG	4 cut(s)	109, 146, 284, 746
BstUI	CGCG	2 cut(s)	68, 118
BstV1I	GCAGC	2 cut(s)	390, 463
BstV2I	GAAGAC	1 cut(s)	158
BstX2I	RGATCY	2 cut(s)	143, 415
BstYI	RGATCY	2 cut(s)	143, 415
BstZ17I	GTATAC	1 cut(s)	604
BsuRI	GGCC	1 cut(s)	269
BtsCI	GGATG	5 cut(s)	208, 487, 538, 552, 657
BtsIMutI	CAGTG	1 cut(s)	49
Cac8I	GCNNGC	1 cut(s)	50
CciI	TCATGA	1 cut(s)	235
CfoI	GCGC	2 cut(s)	70, 137
CseI	GACGC	2 cut(s)	74, 465
CviAII	CATG	6 cut(s)	49, 236, 349, 475, 636, 835
DdeI	CTNAG	1 cut(s)	684
DinI	GGCGCC	1 cut(s)	136
DpnI	GATC	4 cut(s)	115, 145, 375, 417
DpnII	GATC	4 cut(s)	113, 143, 373, 415
Eam1104I	CTCTTC	3 cut(s)	86, 699, 707
EarI	CTCTTC	3 cut(s)	86, 699, 707
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	685
Eco31I	GGTCTC	1 cut(s)	14
Eco57I	CTGAAG	3 cut(s)	76, 185, 440
Eco88I	CYCGRG	1 cut(s)	25
EcoRII	CCWGG	2 cut(s)	284, 746
EcoT14I	CCWWGG	1 cut(s)	325
EcoT22I	ATGCAT	1 cut(s)	435
EcoT38I	GRGCYC	1 cut(s)	685
EgeI	GGCGCC	1 cut(s)	136
EheI	GGCGCC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	6 cut(s)	52, 239, 352, 478, 639, 838
FalI	AAGNNNNNCTT	2 cut(s)	488, 520
FaqI	GGGAC	1 cut(s)	492
FatI	CATG	6 cut(s)	48, 235, 348, 474, 635, 834
FauI	CCCGC	2 cut(s)	169, 204
FblI	GTMKAC	2 cut(s)	525, 603
Fnu4HI	GCNGC	4 cut(s)	77, 259, 404, 452
FokI	GGATG	5 cut(s)	215, 474, 545, 559, 644
FriOI	GRGCYC	1 cut(s)	685
Fsp4HI	GCNGC	4 cut(s)	77, 259, 404, 452
FspBI	CTAG	1 cut(s)	543
GlaI	GCGC	2 cut(s)	69, 136
GluI	GCNGC	4 cut(s)	77, 259, 404, 452
GsuI	CTGGAG	2 cut(s)	307, 330
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	3 cut(s)	111, 147, 377
HgaI	GACGC	2 cut(s)	74, 465
HhaI	GCGC	2 cut(s)	70, 137
Hin1I	GRCGYC	2 cut(s)	135, 457
Hin1II	CATG	6 cut(s)	52, 239, 352, 478, 639, 838
Hin6I	GCGC	2 cut(s)	68, 135
HinP1I	GCGC	2 cut(s)	68, 135
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HinfI	GANTC	2 cut(s)	39, 743
HpaII	CCGG	3 cut(s)	111, 147, 377
HphI	GGTGA	1 cut(s)	680
Hpy166II	GTNNAC	2 cut(s)	526, 604
Hpy188I	TCNGA	4 cut(s)	38, 420, 445, 687
Hpy188III	TCNNGA	2 cut(s)	236, 828
Hpy8I	GTNNAC	2 cut(s)	526, 604
Hpy99I	CGWCG	3 cut(s)	68, 134, 459
HpyAV	CCTTC	2 cut(s)	134, 359
HpyCH4III	ACNGT	2 cut(s)	298, 523
HpyCH4IV	ACGT	1 cut(s)	803
HpyCH4V	TGCA	5 cut(s)	52, 433, 466, 474, 487
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 76, 288
HpyF3I	CTNAG	1 cut(s)	684
HpySE526I	ACGT	1 cut(s)	803
Hsp92I	GRCGYC	2 cut(s)	135, 457
Hsp92II	CATG	6 cut(s)	52, 239, 352, 478, 639, 838
HspAI	GCGC	2 cut(s)	68, 135
KasI	GGCGCC	1 cut(s)	134
Kzo9I	GATC	4 cut(s)	113, 143, 373, 415
LguI	GCTCTTC	1 cut(s)	86
LmnI	GCTCC	5 cut(s)	112, 287, 288, 327, 590
Lsp1109I	GCAGC	2 cut(s)	390, 463
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	1 cut(s)	803
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	4 cut(s)	115, 145, 375, 417
MbiI	CCGCTC	3 cut(s)	30, 79, 322
MboI	GATC	4 cut(s)	113, 143, 373, 415
MboII	GAAGA	7 cut(s)	73, 163, 178, 556, 584, 716, 724
MfeI	CAATTG	1 cut(s)	597
MflI	RGATCY	2 cut(s)	143, 415
MhlI	GDGCHC	1 cut(s)	685
MluCI	AATT	2 cut(s)	53, 597
Mly113I	GGCGCC	1 cut(s)	135
MlyI	GAGTC	2 cut(s)	48, 752
MnlI	CCTC	9 cut(s)	34, 107, 188, 192, 272, 508, 581, 672, 691
Mph1103I	ATGCAT	1 cut(s)	435
MspA1I	CMGCKG	1 cut(s)	849
MspI	CCGG	3 cut(s)	111, 147, 377
MspR9I	CCNGG	4 cut(s)	111, 148, 286, 748
MunI	CAATTG	1 cut(s)	597
Mva1269I	GAATGC	1 cut(s)	435
MvaI	CCWGG	2 cut(s)	286, 748
MvnI	CGCG	2 cut(s)	68, 118
MwoI	GCNNNNNNNGC	3 cut(s)	65, 76, 288
NarI	GGCGCC	1 cut(s)	135
NciI	CCSGG	2 cut(s)	111, 148
NdeII	GATC	4 cut(s)	113, 143, 373, 415
NlaIII	CATG	6 cut(s)	52, 239, 352, 478, 639, 838
NlaIV	GGNNCC	4 cut(s)	122, 136, 145, 283
NmeAIII	GCCGAG	1 cut(s)	485
NsiI	ATGCAT	1 cut(s)	435
NspI	RCATGY	1 cut(s)	52
PaeI	GCATGC	1 cut(s)	52
PaeR7I	CTCGAG	1 cut(s)	25
PagI	TCATGA	1 cut(s)	235
PciSI	GCTCTTC	1 cut(s)	86
PctI	GAATGC	1 cut(s)	435
PfoI	TCCNGGA	3 cut(s)	109, 146, 284
PkrI	GCNGC	4 cut(s)	78, 260, 405, 453
PleI	GAGTC	2 cut(s)	47, 751
PluTI	GGCGCC	1 cut(s)	138
PpsI	GAGTC	2 cut(s)	47, 751
Psp6I	CCWGG	2 cut(s)	284, 746
PspGI	CCWGG	2 cut(s)	284, 746
PspN4I	GGNNCC	4 cut(s)	122, 136, 145, 283
PspXI	VCTCGAGB	1 cut(s)	25
PsuI	RGATCY	2 cut(s)	143, 415
SalI	GTCGAC	1 cut(s)	524
SapI	GCTCTTC	1 cut(s)	86
SatI	GCNGC	4 cut(s)	77, 259, 404, 452
Sau3AI	GATC	4 cut(s)	113, 143, 373, 415
SchI	GAGTC	2 cut(s)	48, 752
ScrFI	CCNGG	4 cut(s)	111, 148, 286, 748
SduI	GDGCHC	1 cut(s)	685
SfaNI	GCATC	1 cut(s)	496
SfoI	GGCGCC	1 cut(s)	136
Sfr274I	CTCGAG	1 cut(s)	25
SlaI	CTCGAG	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
SphI	GCATGC	1 cut(s)	52
Sse9I	AATT	2 cut(s)	53, 597
SspDI	GGCGCC	1 cut(s)	134
SspMI	CTAG	1 cut(s)	543
StyD4I	CCNGG	4 cut(s)	109, 146, 284, 746
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	2 cut(s)	298, 523
TaiI	ACGT	1 cut(s)	806
TaqI	TCGA	2 cut(s)	26, 525
TasI	AATT	2 cut(s)	53, 597
TauI	GCSGC	2 cut(s)	79, 261
TscAI	CASTG	1 cut(s)	49
TseI	GCWGC	2 cut(s)	403, 451
TspDTI	ATGAA	1 cut(s)	224
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	49
XceI	RCATGY	1 cut(s)	52
XhoI	CTCGAG	1 cut(s)	25
XmiI	GTMKAC	2 cut(s)	525, 603
XspI	CTAG	1 cut(s)	543
Zsp2I	ATGCAT	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.