Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008564

Physical Location & Seq

Genomic Coordinates Forward (+)

45226539 .. 45227255

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0300400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGAGGAAATTTCAGGCTTTTGCCTCTTCATCTTCGTCTTCCTTGTCTTCGGAGGCAGTGCGTCTGTTGTGCGGAGTTTGGGCGCTGCTGGGGCTGTGTCAGTGGGCCAATTTGCTGTTGGTACACCATCGGAGGGATGCTGTGATTACTGGGAGGAGTGGGATCCGAGAAGCAGTACCGGTGATCTCAGGGTTTTGGGGCGAGGTCTCGCTGCAGATACGGTGGTGATGGGTGCTTGGTCGGATCGATGGTTGAAGGATAAGGGCGGTGGGAACTCGGTTTCTTCTTCTGCCGGTGGGTTTGGATCTTCATCTGCGTGGGATTACGACGCTACCGAGACGGGGCTGAAGAACGTCGGATTGTGGTGCGAGACGAGGGGATTGGGTTCTGATGGTGATGGCCGAGCGGTGGTGTCGGCTTGTTGGGACTTCGATGGCGGCCTTTTGTTCGTCGGCGATGGCTATCGCAGTTTGGCAATCTCCTCCATTGCAGGTCATAGGGCCGCGTCCAACGGTGTTGCTGTCCAGATCGCTGACACTAGGATCCGGATCTGGGATCCAGGTGGGCTTGGCAAATGGAGCCGGATCTGGGATCCGGGTGGAGTTTGGTTTTGGCCTGCGACCCACAATCTTTGTTGGGCTTTTTATGATTTGCTAGAATGGATTGGGGCTCCTGTTGTCACGCCCCTGATTTTTAACACAATTAAAAATCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016740 GO:0016741 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

238

Amino Acids

25.38

Weight (kDa)

4.8

Isoelectric Point (pI)

33.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19430 AT1G19430 AT1G19430
fragaria_vesca	FvH4_2g39800 FvH4_2g39800
malus_domestica	MD08G1031800.v1.1 MD15G1027700.v1.1
prunus_persica	Prupe.1G379400_v2.0.a1
pyrus_communis	pycom08g02510 pycom15g02360
rosa_chinensis	RchiOBHm_Chr6g0301041
rosa_laevigata	RLG00000011282
rosa_multiflora	Rmu_sc0003168.1_g000010 Rmu_sc0035551.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167230
rosa_rugosa	Rorug06G0300200 Rorug06G0300300 Rorug06G0300400 Rorug06G0300500
rosa_samantha	Rh6AG414100 Rh6BG421100 Rh6CG428700 Rh6DG414100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	482
AccBSI	CCGCTC	1 cut(s)	407
AccII	CGCG	1 cut(s)	506
AccIII	TCCGGA	1 cut(s)	546
AciI	CCGC	5 cut(s)	73, 267, 407, 438, 504
AcoI	YGGCCR	1 cut(s)	400
AcsI	RAATTY	1 cut(s)	9
AcuI	CTGAAG	1 cut(s)	368
AfaI	GTAC	2 cut(s)	124, 178
AfiI	CCNNNNNNNGG	5 cut(s)	134, 342, 409, 553, 589
AgeI	ACCGGT	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	256
AjnI	CCWGG	1 cut(s)	559
Alw26I	GTCTC	3 cut(s)	212, 332, 365
Aor13HI	TCCGGA	1 cut(s)	546
AoxI	GGCC	5 cut(s)	106, 400, 439, 501, 614
ApeKI	GCWGC	2 cut(s)	86, 212
ApoI	RAATTY	1 cut(s)	9
AsiGI	ACCGGT	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	2 cut(s)	106, 501
AsuC2I	CCSGG	1 cut(s)	597
AsuHPI	GGTGA	3 cut(s)	194, 238, 407
BaeI	ACNNNNGTAYC	2 cut(s)	210, 243
BamHI	GGATCC	4 cut(s)	163, 543, 556, 592
BanII	GRGCYC	1 cut(s)	673
BbsI	GAAGAC	2 cut(s)	31, 40
BbvI	GCAGC	2 cut(s)	73, 199
BccI	CCATC	7 cut(s)	136, 223, 243, 386, 392, 428, 452
BciT130I	CCWGG	1 cut(s)	561
BcnI	CCSGG	1 cut(s)	597
BcoDI	GTCTC	3 cut(s)	212, 332, 365
BfaI	CTAG	2 cut(s)	540, 656
BfmI	CTRYAG	1 cut(s)	213
BfoI	RGCGCY	1 cut(s)	87
BfuAI	ACCTGC	1 cut(s)	482
BisI	GCNGC	4 cut(s)	87, 213, 439, 504
BlsI	GCNGC	4 cut(s)	88, 214, 440, 505
Bme1390I	CCNGG	2 cut(s)	561, 597
BmgT120I	GGNCC	2 cut(s)	106, 501
BmiI	GGNNCC	6 cut(s)	165, 545, 558, 581, 594, 672
BmrFI	CCNGG	2 cut(s)	561, 597
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	128
BmuI	ACTGGG	1 cut(s)	160
BpiI	GAAGAC	2 cut(s)	31, 40
BpuMI	CCSGG	1 cut(s)	597
Bsa29I	ATCGAT	2 cut(s)	247, 712
BsaBI	GATNNNNATC	3 cut(s)	310, 462, 548
BsaI	GGTCTC	1 cut(s)	212
BsaWI	WCCGGW	2 cut(s)	179, 546
Bsc4I	CCNNNNNNNGG	5 cut(s)	134, 342, 409, 553, 589
Bse118I	RCCGGY	2 cut(s)	179, 293
Bse1I	ACTGG	1 cut(s)	155
Bse3DI	GCAATG	1 cut(s)	486
Bse8I	GATNNNNATC	3 cut(s)	310, 462, 548
BseAI	TCCGGA	1 cut(s)	546
BseBI	CCWGG	1 cut(s)	561
BseCI	ATCGAT	2 cut(s)	247, 712
BseGI	GGATG	1 cut(s)	143
BseJI	GATNNNNATC	3 cut(s)	310, 462, 548
BseLI	CCNNNNNNNGG	5 cut(s)	134, 342, 409, 553, 589
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	1 cut(s)	202
BseNI	ACTGG	1 cut(s)	155
BseRI	GAGGAG	2 cut(s)	170, 472
BseXI	GCAGC	2 cut(s)	73, 199
BseYI	CCCAGC	1 cut(s)	89
Bsh1236I	CGCG	1 cut(s)	506
BshFI	GGCC	5 cut(s)	108, 402, 441, 503, 616
BshTI	ACCGGT	1 cut(s)	179
BshVI	ATCGAT	2 cut(s)	247, 712
BsiSI	CCGG	5 cut(s)	180, 294, 547, 583, 596
BslFI	GGGAC	1 cut(s)	440
BslI	CCNNNNNNNGG	5 cut(s)	134, 342, 409, 553, 589
BsmAI	GTCTC	3 cut(s)	212, 332, 365
BsmBI	CGTCTC	2 cut(s)	332, 365
BsmFI	GGGAC	1 cut(s)	440
BsnI	GGCC	5 cut(s)	108, 402, 441, 503, 616
Bso31I	GGTCTC	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	673
Bsp13I	TCCGGA	1 cut(s)	546
BspACI	CCGC	5 cut(s)	73, 267, 407, 438, 504
BspANI	GGCC	5 cut(s)	108, 402, 441, 503, 616
BspCNI	CTCAG	1 cut(s)	201
BspDI	ATCGAT	2 cut(s)	247, 712
BspEI	TCCGGA	1 cut(s)	546
BspFNI	CGCG	1 cut(s)	506
BspLI	GGNNCC	6 cut(s)	165, 545, 558, 581, 594, 672
BspMAI	CTGCAG	1 cut(s)	217
BspMI	ACCTGC	1 cut(s)	482
BspTNI	GGTCTC	1 cut(s)	212
BsrBI	CCGCTC	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	486
BsrFI	RCCGGY	2 cut(s)	179, 293
BsrI	ACTGG	1 cut(s)	155
BssAI	RCCGGY	2 cut(s)	179, 293
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	2 cut(s)	223, 515
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	143
BstFNI	CGCG	1 cut(s)	506
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstMAI	GTCTC	3 cut(s)	212, 332, 365
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 579
BstNI	CCWGG	1 cut(s)	561
BstSCI	CCNGG	2 cut(s)	559, 595
BstSFI	CTRYAG	1 cut(s)	213
BstUI	CGCG	1 cut(s)	506
BstV1I	GCAGC	2 cut(s)	73, 199
BstV2I	GAAGAC	2 cut(s)	31, 40
BstX2I	RGATCY	7 cut(s)	163, 305, 543, 549, 556, 585, 592
BstYI	RGATCY	7 cut(s)	163, 305, 543, 549, 556, 585, 592
Bsu15I	ATCGAT	2 cut(s)	247, 712
BsuRI	GGCC	5 cut(s)	108, 402, 441, 503, 616
BsuTUI	ATCGAT	2 cut(s)	247, 712
BtgZI	GCGATG	1 cut(s)	471
BtsCI	GGATG	1 cut(s)	143
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	2 cut(s)	64, 108
BveI	ACCTGC	1 cut(s)	482
Cac8I	GCNNGC	1 cut(s)	618
CfoI	GCGC	1 cut(s)	86
Cfr10I	RCCGGY	2 cut(s)	179, 293
Cfr13I	GGNCC	2 cut(s)	106, 501
ClaI	ATCGAT	2 cut(s)	247, 712
CseI	GACGC	3 cut(s)	51, 338, 495
Csp6I	GTAC	2 cut(s)	123, 177
CspAI	ACCGGT	1 cut(s)	179
CspCI	CAANNNNNGTGG	2 cut(s)	614, 649
CviQI	GTAC	2 cut(s)	123, 177
DdeI	CTNAG	1 cut(s)	188
EaeI	YGGCCR	1 cut(s)	400
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	673
Eco31I	GGTCTC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	368
EcoRII	CCWGG	1 cut(s)	559
EcoT38I	GRGCYC	1 cut(s)	673
Esp3I	CGTCTC	2 cut(s)	332, 365
FaiI	YATR	2 cut(s)	498, 648
FaqI	GGGAC	1 cut(s)	440
Fnu4HI	GCNGC	4 cut(s)	87, 213, 439, 504
FokI	GGATG	1 cut(s)	150
FriOI	GRGCYC	1 cut(s)	673
Fsp4HI	GCNGC	4 cut(s)	87, 213, 439, 504
FspBI	CTAG	2 cut(s)	540, 656
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	4 cut(s)	87, 213, 439, 504
GsaI	CCCAGC	1 cut(s)	93
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	5 cut(s)	108, 402, 441, 503, 616
HapII	CCGG	5 cut(s)	180, 294, 547, 583, 596
HgaI	GACGC	3 cut(s)	51, 338, 495
HhaI	GCGC	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HpaII	CCGG	5 cut(s)	180, 294, 547, 583, 596
HphI	GGTGA	3 cut(s)	194, 238, 407
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	6 cut(s)	53, 133, 168, 244, 359, 391
Hpy188III	TCNNGA	2 cut(s)	526, 547
Hpy8I	GTNNAC	1 cut(s)	125
Hpy99I	CGWCG	3 cut(s)	332, 359, 455
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	2 cut(s)	223, 515
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	2 cut(s)	215, 491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 579
HpyF3I	CTNAG	1 cut(s)	188
HpySE526I	ACGT	1 cut(s)	354
HspAI	GCGC	1 cut(s)	84
Kpn2I	TCCGGA	1 cut(s)	546
LmnI	GCTCC	2 cut(s)	579, 676
Lsp1109I	GCAGC	2 cut(s)	73, 199
LweI	GCATC	1 cut(s)	128
MaeI	CTAG	2 cut(s)	540, 656
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	679
MbiI	CCGCTC	1 cut(s)	407
MboII	GAAGA	8 cut(s)	19, 25, 31, 40, 276, 279, 300, 361
MflI	RGATCY	7 cut(s)	163, 305, 543, 549, 556, 585, 592
MhlI	GDGCHC	1 cut(s)	673
MluCI	AATT	3 cut(s)	9, 110, 702
MmeI	TCCRAC	3 cut(s)	222, 337, 534
MnlI	CCTC	7 cut(s)	35, 47, 127, 148, 197, 369, 493
MroI	TCCGGA	1 cut(s)	546
MseI	TTAA	2 cut(s)	696, 705
MslI	CAYNNNNRTG	1 cut(s)	316
MspI	CCGG	5 cut(s)	180, 294, 547, 583, 596
MspR9I	CCNGG	2 cut(s)	561, 597
MvaI	CCWGG	1 cut(s)	561
MvnI	CGCG	1 cut(s)	506
MwoI	GCNNNNNNNGC	2 cut(s)	92, 579
NciI	CCSGG	1 cut(s)	597
NlaIV	GGNNCC	6 cut(s)	165, 545, 558, 581, 594, 672
NmeAIII	GCCGAG	1 cut(s)	428
NmuCI	GTSAC	1 cut(s)	679
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PinAI	ACCGGT	1 cut(s)	179
PkrI	GCNGC	4 cut(s)	88, 214, 440, 505
Psp6I	CCWGG	1 cut(s)	559
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	559
PspN4I	GGNNCC	6 cut(s)	165, 545, 558, 581, 594, 672
PspPI	GGNCC	2 cut(s)	106, 501
PstI	CTGCAG	1 cut(s)	217
PsuI	RGATCY	7 cut(s)	163, 305, 543, 549, 556, 585, 592
RsaI	GTAC	2 cut(s)	124, 178
RsaNI	GTAC	2 cut(s)	123, 177
RseI	CAYNNNNRTG	1 cut(s)	316
SaqAI	TTAA	2 cut(s)	696, 705
SatI	GCNGC	4 cut(s)	87, 213, 439, 504
Sau96I	GGNCC	2 cut(s)	106, 501
ScrFI	CCNGG	2 cut(s)	561, 597
SduI	GDGCHC	1 cut(s)	673
SetI	ASST	4 cut(s)	208, 357, 496, 565
SfaNI	GCATC	1 cut(s)	128
SfcI	CTRYAG	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	316
Sse9I	AATT	3 cut(s)	9, 110, 702
SsiI	CCGC	5 cut(s)	73, 267, 407, 438, 504
SspMI	CTAG	2 cut(s)	540, 656
StyD4I	CCNGG	2 cut(s)	559, 595
TaaI	ACNGT	2 cut(s)	223, 515
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	3 cut(s)	247, 432, 712
TasI	AATT	3 cut(s)	9, 110, 702
TauI	GCSGC	2 cut(s)	441, 506
Tru1I	TTAA	2 cut(s)	696, 705
Tru9I	TTAA	2 cut(s)	696, 705
TscAI	CASTG	2 cut(s)	64, 108
TseFI	GTSAC	1 cut(s)	679
TseI	GCWGC	2 cut(s)	86, 212
Tsp45I	GTSAC	1 cut(s)	679
TspDTI	ATGAA	2 cut(s)	19, 300
TspRI	CASTG	2 cut(s)	64, 108
XapI	RAATTY	1 cut(s)	9
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XspI	CTAG	2 cut(s)	540, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.