Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0008564

Physical Location & Seq

Genomic Coordinates Reverse (-)

61007703 .. 61012316

Gene Structure 4614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG428700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2148 bp

ATGGCGGTAGCTGCAGCTCGGTTTGGTCGCCCAGCGAAACGCCCGTATTGGGGTTTCTGTATAAAGATGACAGCGGTGGCCGTTATGGGTCTCTGCTTTATATTTGTGTGGACTATGTTTACGTCTCCTTCGAATTCAGTGAGTACAAGAATAGAGAGCTTTGACAATATAGAGCAGCCTCCTGGATCAAGGAGCAAAAGGGTGAGCAGTTCTGGGGCACAATCTGAGAGGAAGGTAGAGGACGAGAAGAAGGTAAATGGGTCTGTTGCTTTGGGTGGTCATGAGGTTAAATCTGAGGAGAGGGAGAAGAAGGAAGTGGCGAATACGAAAAAGGAGAGAGTTAAGAAGAAGTTACCAGAGAAGGTGTCGAAAGAGAAACAATTGAGTAAGGAAGATGGAGATGAAGATGAAGAGCCAGAAGTGGTGGATGGAAAGGAAGAAGGTTTGGATGGTGAAGATGAAGGTGAAGGTGAAGGAAATGGGAATGCAGAAGGAGAGGGTGATTTGATTGAAGGGGTGGATCAGCAATTTGAGGAGAAGTTGGAAGATGATGGCGGTGAATCGGAGAAGAGGGGAAACAAGAGAAATAAGATTAAGGGTCCGGTGTTTGATCCGAAAGCACATTATCACTGGAAATCATGTAGCACAAGGAGCAAGCACAATTACATTCCTTGTATTGATATAGAAGTTGGCTCTGGAAGGCTGCAGCAATATAGGCACACAGAGAGGAGTTGTCCACGATCACCGCCAATGTGTCTTGTGCCTCTTCCCCCAGATGGGTATGACCCTCCAGTCCATTGGCCCGAGAGTAAAGAGAAGATATTGTATAAGAATGTGGAGCATCCAAAGCTTGCTGCATTCGTCAAGGAACATACTTGGGTGATGGAGTCTGGAGAATACCTTACTTTTCCTCAAAACCAGTCTGAGATTAAGGGTGGGGTTCTTCACTATCTTGAGTCCATTGAAGAGATGGTACCAGATCTCGAATGGGGAAAGAATATCCGTGTAGTGCTGGATATCGGATGTACAGATTCCACTTTTGGGGCTTCTCTCCTTGATAAGGATGTATTAACATTATCATTGGGGTTGAAAGATGACCTAGTTGACCTAGCTCAAGTTTCCCTCGAGCGTGGTTTTCCTACTGTAGTTAGCCCATTCGGAAACAGAAGGCTAGCTTTCCCTAGTGGTGTTTTTGATGTTATTCACTGCGGCGGGTGCACTGTACCTTGGCATTCAAATGGGGGTAAGCATCTTCTAGAGATGAATAGGATTTTAAGGCCCGGGGGATACTTTATCTTGTCAACTAAACATGACAGCTTTGAAGCTGAAGAAGCCATGAATACATTGATGGTATCTATCTGCTGGAATATTTTGGCTCATAAAACTGATGAAGTCAGTGATGTGGGTGTCAAAATATATAAGAAGCCGGACTCAAATGATTTATATACGATGAGGAGGAAGAAACATTGGATACCTTTATGCAAGGGAAATGATAACCCAGATGCAGCCTGGTATGTCCCGGTGAAGACTTGTTTGCACACCATTCCATCTGGTATTGAAGAGCGTGGATCAGAGTGGCCGGAGGAATGGCCCAACAGGCTCGAAAGATATCCGGACTGGTTGAATGATAAAGATAAGTTGATTGCAGACACCAAGCATTGGAAAGATATTGTTGACAAATCCTATCTTATTGGACTTGGTATTGACTGGTCAAGCATTCGAAATGTAATGGACATGAAAGCCATCTATGGAGGATTTGCTGCAGCCCTCTTGCAACAAAAGGTTTGGGTGATGAATGTGGTCCCTGTCCATGCACCTGATACGCTTCCTTTCATTTTTGAGCGTGGGCTTGTTGGAACCTACCACGACTGGTGTGAGTCTTTCGGTACTTATCCAAGATCATATGATCTTTTGCATGCTGATCATCTGTTTTCACGGCTCAAGAACAGGTGTAAGCAGCCTGCATCAATTGTTGTTGAGATGGATCGTATTTTACGGCCAGGAGGTTGGGCCATCATACGTGACAAAGTTGAGATTCTAGATCCGTTGGAGGGAATACTCAAGAGTTTGCATTGGGATATAAGAATGACTTATGCTCAACAAAAAGAGGGTATTCTCTGTGCACAGAAAACTACATGGCGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016740 GO:0016741 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

715

Amino Acids

81.01

Weight (kDa)

5.89

Isoelectric Point (pI)

48.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_29	PF03141	221 - 710	1.3e-184	Putative S-adenosyl-L-methionine-dependent methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19430 AT1G19430 AT1G19430
fragaria_vesca	FvH4_2g39800 FvH4_2g39800
malus_domestica	MD08G1031800.v1.1 MD15G1027700.v1.1
prunus_persica	Prupe.1G379400_v2.0.a1
pyrus_communis	pycom08g02510 pycom15g02360
rosa_chinensis	RchiOBHm_Chr6g0301041
rosa_laevigata	RLG00000011282
rosa_multiflora	Rmu_sc0003168.1_g000010 Rmu_sc0035551.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167230
rosa_rugosa	Rorug06G0300200 Rorug06G0300300 Rorug06G0300400 Rorug06G0300500
rosa_samantha	Rh6AG414100 Rh6BG421100 Rh6CG428700 Rh6DG414100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	791
Acc65I	GGTACC	1 cut(s)	973
AccB1I	GGYRCC	2 cut(s)	973, 2139
AccB7I	CCANNNNNTGG	1 cut(s)	1659
AccIII	TCCGGA	1 cut(s)	1612
AciI	CCGC	6 cut(s)	5, 74, 555, 746, 1209, 1212
AclWI	GGATC	6 cut(s)	193, 528, 605, 1576, 1992, 2036
AcoI	YGGCCR	3 cut(s)	78, 1577, 1997
AcsI	RAATTY	1 cut(s)	133
AcuI	CTGAAG	1 cut(s)	1347
AcyI	GRCGYC	1 cut(s)	2140
AfaI	GTAC	5 cut(s)	145, 975, 1027, 1224, 1888
AfiI	CCNNNNNNNGG	8 cut(s)	49, 50, 776, 777, 1041, 1060, 1659, 2051
AgsI	TTSAA	7 cut(s)	512, 965, 1090, 1236, 1322, 1559, 1624
AjnI	CCWGG	3 cut(s)	181, 1508, 1999
AluBI	AGCT	8 cut(s)	11, 17, 159, 850, 1112, 1175, 1317, 1325
AluI	AGCT	8 cut(s)	11, 17, 159, 850, 1112, 1175, 1317, 1325
Alw21I	GWGCWC	2 cut(s)	1220, 2125
Alw26I	GTCTC	2 cut(s)	95, 129
Alw44I	GTGCAC	2 cut(s)	1216, 2121
AlwI	GGATC	6 cut(s)	193, 528, 605, 1576, 1992, 2036
Ama87I	CYCGRG	3 cut(s)	803, 1124, 1280
Aor13HI	TCCGGA	1 cut(s)	1612
AoxI	GGCC	7 cut(s)	78, 800, 1277, 1577, 1589, 1997, 2010
ApaLI	GTGCAC	2 cut(s)	1216, 2121
ApoI	RAATTY	1 cut(s)	133
Asp718I	GGTACC	1 cut(s)	973
AspLEI	GCGC	1 cut(s)	2142
AspS9I	GGNCC	6 cut(s)	599, 801, 1278, 1590, 1801, 2010
AsuC2I	CCSGG	3 cut(s)	1281, 1282, 1520
AsuII	TTCGAA	2 cut(s)	131, 1720
AsuNHI	GCTAGC	1 cut(s)	1171
AvaI	CYCGRG	3 cut(s)	803, 1124, 1280
AvaII	GGWCC	2 cut(s)	599, 1801
BaeGI	GKGCMC	3 cut(s)	220, 1220, 2125
BanI	GGYRCC	2 cut(s)	973, 2139
BarI	GAAGNNNNNNTAC	2 cut(s)	957, 989
BbsI	GAAGAC	1 cut(s)	1532
Bbv12I	GWGCWC	2 cut(s)	1220, 2125
BbvI	GCAGC	9 cut(s)	26, 187, 690, 718, 841, 1517, 1747, 1775, 1969
BceAI	ACGGC	3 cut(s)	65, 1952, 2012
BciT130I	CCWGG	3 cut(s)	183, 1510, 2001
BciVI	GTATCC	2 cut(s)	1280, 1464
BclI	TGATCA	1 cut(s)	1921
BcnI	CCSGG	3 cut(s)	1281, 1282, 1520
BcoDI	GTCTC	2 cut(s)	95, 129
BfaI	CTAG	6 cut(s)	1100, 1109, 1172, 1182, 1256, 2039
BfmI	CTRYAG	4 cut(s)	12, 704, 1143, 1761
BfoI	RGCGCY	1 cut(s)	2143
BfuI	GTATCC	2 cut(s)	1280, 1464
BglI	GCCNNNNNGGC	1 cut(s)	1597
BglII	AGATCT	1 cut(s)	979
Bme1390I	CCNGG	6 cut(s)	183, 1281, 1282, 1510, 1520, 2001
Bme18I	GGWCC	2 cut(s)	599, 1801
BmeT110I	CYCGRG	3 cut(s)	803, 1124, 1280
BmgT120I	GGNCC	6 cut(s)	599, 801, 1278, 1590, 1801, 2010
BmiI	GGNNCC	5 cut(s)	600, 975, 1803, 1858, 2141
BmrFI	CCNGG	6 cut(s)	183, 1281, 1282, 1510, 1520, 2001
BmsI	GCATC	4 cut(s)	850, 1258, 1492, 1973
BmtI	GCTAGC	1 cut(s)	1175
BpiI	GAAGAC	1 cut(s)	1532
BpmI	CTGGAG	2 cut(s)	774, 912
Bpu14I	TTCGAA	2 cut(s)	131, 1720
BpuEI	CTTGAG	4 cut(s)	974, 1098, 1925, 2045
BpuMI	CCSGG	3 cut(s)	1281, 1282, 1520
BsaAI	YACGTR	1 cut(s)	2021
BsaHI	GRCGYC	1 cut(s)	2140
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	3 cut(s)	1226, 1280, 1281
BsaWI	WCCGGW	2 cut(s)	601, 1612
Bsc4I	CCNNNNNNNGG	8 cut(s)	49, 50, 776, 777, 1041, 1060, 1659, 2051
Bse1I	ACTGG	6 cut(s)	635, 791, 919, 1622, 1712, 1874
BseAI	TCCGGA	1 cut(s)	1612
BseBI	CCWGG	3 cut(s)	183, 1510, 2001
BseDI	CCNNGG	3 cut(s)	1226, 1280, 1281
BseGI	GGATG	5 cut(s)	433, 454, 841, 1028, 1069
BseLI	CCNNNNNNNGG	8 cut(s)	49, 50, 776, 777, 1041, 1060, 1659, 2051
BseMII	CTCAG	3 cut(s)	216, 285, 915
BseNI	ACTGG	6 cut(s)	635, 791, 919, 1622, 1712, 1874
BseRI	GAGGAG	4 cut(s)	311, 548, 742, 1468
BseSI	GKGCMC	3 cut(s)	220, 1220, 2125
BseXI	GCAGC	9 cut(s)	26, 187, 690, 718, 841, 1517, 1747, 1775, 1969
BseYI	CCCAGC	1 cut(s)	31
BshFI	GGCC	7 cut(s)	80, 802, 1279, 1579, 1591, 1999, 2012
BshNI	GGYRCC	2 cut(s)	973, 2139
BsiHKAI	GWGCWC	2 cut(s)	1220, 2125
BsiHKCI	CYCGRG	3 cut(s)	803, 1124, 1280
BsiSI	CCGG	6 cut(s)	602, 1281, 1427, 1520, 1580, 1613
BslFI	GGGAC	2 cut(s)	1502, 1787
BslI	CCNNNNNNNGG	8 cut(s)	49, 50, 776, 777, 1041, 1060, 1659, 2051
BsmAI	GTCTC	2 cut(s)	95, 129
BsmBI	CGTCTC	1 cut(s)	129
BsmFI	GGGAC	2 cut(s)	1502, 1787
BsmI	GAATGC	4 cut(s)	490, 857, 1231, 1716
BsnI	GGCC	7 cut(s)	80, 802, 1279, 1579, 1591, 1999, 2012
Bso31I	GGTCTC	1 cut(s)	95
BsoBI	CYCGRG	3 cut(s)	803, 1124, 1280
Bsp119I	TTCGAA	2 cut(s)	131, 1720
Bsp1286I	GDGCHC	3 cut(s)	220, 1220, 2125
Bsp13I	TCCGGA	1 cut(s)	1612
Bsp1407I	TGTACA	1 cut(s)	1025
BspACI	CCGC	6 cut(s)	5, 74, 555, 746, 1209, 1212
BspANI	GGCC	7 cut(s)	80, 802, 1279, 1579, 1591, 1999, 2012
BspCNI	CTCAG	3 cut(s)	217, 286, 916
BspEI	TCCGGA	1 cut(s)	1612
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	5 cut(s)	600, 975, 1803, 1858, 2141
BspMAI	CTGCAG	3 cut(s)	16, 708, 1765
BspOI	GCTAGC	1 cut(s)	1175
BspPI	GGATC	6 cut(s)	193, 528, 605, 1576, 1992, 2036
BspQI	GCTCTTC	2 cut(s)	405, 1554
BspT104I	TTCGAA	2 cut(s)	131, 1720
BspT107I	GGYRCC	2 cut(s)	973, 2139
BspTNI	GGTCTC	1 cut(s)	95
BsrGI	TGTACA	1 cut(s)	1025
BsrI	ACTGG	6 cut(s)	635, 791, 919, 1622, 1712, 1874
BssECI	CCNNGG	3 cut(s)	1226, 1280, 1281
BssNI	GRCGYC	1 cut(s)	2140
BssT1I	CCWWGG	1 cut(s)	1226
Bst2UI	CCWGG	3 cut(s)	183, 1510, 2001
Bst4CI	ACNGT	2 cut(s)	1144, 1222
Bst6I	CTCTTC	5 cut(s)	405, 563, 771, 960, 1554
BstACI	GRCGYC	1 cut(s)	2140
BstAUI	TGTACA	1 cut(s)	1025
BstBAI	YACGTR	1 cut(s)	2021
BstBI	TTCGAA	2 cut(s)	131, 1720
BstC8I	GCNNGC	5 cut(s)	656, 852, 1173, 1917, 1962
BstDEI	CTNAG	3 cut(s)	225, 294, 924
BstENI	CCTNNNNNAGG	1 cut(s)	1058
BstF5I	GGATG	5 cut(s)	433, 454, 841, 1028, 1069
BstH2I	RGCGCY	1 cut(s)	2143
BstHHI	GCGC	1 cut(s)	2142
BstMAI	GTCTC	2 cut(s)	95, 129
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 651, 715, 847, 1215, 1331, 1597
BstNI	CCWGG	3 cut(s)	183, 1510, 2001
BstNSI	RCATGY	1 cut(s)	1919
BstSCI	CCNGG	6 cut(s)	181, 1279, 1280, 1508, 1518, 1999
BstSFI	CTRYAG	4 cut(s)	12, 704, 1143, 1761
BstSLI	GKGCMC	3 cut(s)	220, 1220, 2125
BstV1I	GCAGC	9 cut(s)	26, 187, 690, 718, 841, 1517, 1747, 1775, 1969
BstV2I	GAAGAC	1 cut(s)	1532
BstX2I	RGATCY	2 cut(s)	979, 2041
BstXI	CCANNNNNNTGG	2 cut(s)	798, 2007
BstYI	RGATCY	2 cut(s)	979, 2041
BsuI	GTATCC	2 cut(s)	1280, 1464
BsuRI	GGCC	7 cut(s)	80, 802, 1279, 1579, 1591, 1999, 2012
BtsCI	GGATG	5 cut(s)	433, 454, 841, 1028, 1069
BtsI	GCAGTG	1 cut(s)	1204
BtsIMutI	CAGTG	5 cut(s)	144, 628, 1204, 1218, 1402
Cac8I	GCNNGC	5 cut(s)	656, 852, 1173, 1917, 1962
CciI	TCATGA	1 cut(s)	280
CfoI	GCGC	1 cut(s)	2142
Cfr13I	GGNCC	6 cut(s)	599, 801, 1278, 1590, 1801, 2010
Cfr9I	CCCGGG	1 cut(s)	1280
Csp6I	GTAC	5 cut(s)	144, 974, 1026, 1223, 1887
CviAII	CATG	8 cut(s)	281, 639, 1310, 1336, 1735, 1811, 1916, 2136
CviQI	GTAC	5 cut(s)	144, 974, 1026, 1223, 1887
DdeI	CTNAG	3 cut(s)	225, 294, 924
DinI	GGCGCC	1 cut(s)	2141
DrdI	GACNNNNNNGTC	1 cut(s)	791
DseDI	GACNNNNNNGTC	1 cut(s)	791
EaeI	YGGCCR	3 cut(s)	78, 1577, 1997
Eam1104I	CTCTTC	5 cut(s)	405, 563, 771, 960, 1554
EarI	CTCTTC	5 cut(s)	405, 563, 771, 960, 1554
Eco130I	CCWWGG	1 cut(s)	1226
Eco31I	GGTCTC	1 cut(s)	95
Eco32I	GATATC	2 cut(s)	1018, 1610
Eco47I	GGWCC	2 cut(s)	599, 1801
Eco57I	CTGAAG	1 cut(s)	1347
Eco88I	CYCGRG	3 cut(s)	803, 1124, 1280
EcoNI	CCTNNNNNAGG	1 cut(s)	1058
EcoRI	GAATTC	1 cut(s)	133
EcoRII	CCWGG	3 cut(s)	181, 1508, 1999
EcoRV	GATATC	2 cut(s)	1018, 1610
EcoT14I	CCWWGG	1 cut(s)	1226
EgeI	GGCGCC	1 cut(s)	2141
EheI	GGCGCC	1 cut(s)	2141
ErhI	CCWWGG	1 cut(s)	1226
Esp3I	CGTCTC	1 cut(s)	129
FaeI	CATG	8 cut(s)	284, 642, 1313, 1339, 1738, 1814, 1919, 2139
FalI	AAGNNNNNCTT	4 cut(s)	1159, 1191, 2074, 2106
FaqI	GGGAC	2 cut(s)	1502, 1787
FatI	CATG	8 cut(s)	280, 638, 1309, 1335, 1734, 1810, 1915, 2135
FauI	CCCGC	1 cut(s)	1205
FauNDI	CATATG	1 cut(s)	1903
FbaI	TGATCA	1 cut(s)	1921
FokI	GGATG	5 cut(s)	440, 461, 828, 1035, 1076
FspBI	CTAG	6 cut(s)	1100, 1109, 1172, 1182, 1256, 2039
GlaI	GCGC	1 cut(s)	2141
GsaI	CCCAGC	1 cut(s)	35
GsuI	CTGGAG	2 cut(s)	774, 912
HaeII	RGCGCY	1 cut(s)	2143
HaeIII	GGCC	7 cut(s)	80, 802, 1279, 1579, 1591, 1999, 2012
HapII	CCGG	6 cut(s)	602, 1281, 1427, 1520, 1580, 1613
HhaI	GCGC	1 cut(s)	2142
Hin1I	GRCGYC	1 cut(s)	2140
Hin1II	CATG	8 cut(s)	284, 642, 1313, 1339, 1738, 1814, 1919, 2139
Hin6I	GCGC	1 cut(s)	2140
HinP1I	GCGC	1 cut(s)	2140
HincII	GTYRAC	3 cut(s)	1105, 1302, 1675
HindII	GTYRAC	3 cut(s)	1105, 1302, 1675
HindIII	AAGCTT	1 cut(s)	848
HinfI	GANTC	7 cut(s)	560, 887, 956, 1031, 1430, 1877, 2035
HpaII	CCGG	6 cut(s)	602, 1281, 1427, 1520, 1580, 1613
Hpy166II	GTNNAC	8 cut(s)	111, 120, 737, 1105, 1218, 1302, 1675, 2123
Hpy188I	TCNGA	8 cut(s)	226, 295, 565, 615, 925, 1022, 1160, 1573
Hpy8I	GTNNAC	8 cut(s)	111, 120, 737, 1105, 1218, 1302, 1675, 2123
HpyCH4III	ACNGT	2 cut(s)	1144, 1222
HpyCH4IV	ACGT	2 cut(s)	122, 2020
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 651, 715, 847, 1215, 1331, 1597
HpyF3I	CTNAG	3 cut(s)	225, 294, 924
HpySE526I	ACGT	2 cut(s)	122, 2020
Hsp92I	GRCGYC	1 cut(s)	2140
Hsp92II	CATG	8 cut(s)	284, 642, 1313, 1339, 1738, 1814, 1919, 2139
HspAI	GCGC	1 cut(s)	2140
KasI	GGCGCC	1 cut(s)	2139
Kpn2I	TCCGGA	1 cut(s)	1612
KpnI	GGTACC	1 cut(s)	977
Ksp22I	TGATCA	1 cut(s)	1921
LguI	GCTCTTC	2 cut(s)	405, 1554
LmnI	GCTCC	3 cut(s)	192, 651, 838
Lsp1109I	GCAGC	9 cut(s)	26, 187, 690, 718, 841, 1517, 1747, 1775, 1969
LweI	GCATC	4 cut(s)	850, 1258, 1492, 1973
MaeI	CTAG	6 cut(s)	1100, 1109, 1172, 1182, 1256, 2039
MaeII	ACGT	2 cut(s)	122, 2020
MaeIII	GTNAC	2 cut(s)	351, 2021
MfeI	CAATTG	2 cut(s)	380, 1968
MflI	RGATCY	2 cut(s)	979, 2041
MhlI	GDGCHC	3 cut(s)	220, 1220, 2125
MluCI	AATT	5 cut(s)	133, 380, 527, 661, 1968
Mly113I	GGCGCC	1 cut(s)	2140
MlyI	GAGTC	4 cut(s)	896, 965, 1424, 1886
MmeI	TCCRAC	3 cut(s)	522, 1834, 2028
MroI	TCCGGA	1 cut(s)	1612
MseI	TTAA	6 cut(s)	288, 342, 594, 930, 1070, 1274
MslI	CAYNNNNRTG	1 cut(s)	1236
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	6 cut(s)	602, 1281, 1427, 1520, 1580, 1613
MspR9I	CCNGG	6 cut(s)	183, 1281, 1282, 1510, 1520, 2001
MunI	CAATTG	2 cut(s)	380, 1968
Mva1269I	GAATGC	4 cut(s)	490, 857, 1231, 1716
MvaI	CCWGG	3 cut(s)	183, 1510, 2001
MwoI	GCNNNNNNNGC	7 cut(s)	11, 651, 715, 847, 1215, 1331, 1597
NarI	GGCGCC	1 cut(s)	2140
NciI	CCSGG	3 cut(s)	1281, 1282, 1520
NdeI	CATATG	1 cut(s)	1903
NheI	GCTAGC	1 cut(s)	1171
NlaIII	CATG	8 cut(s)	284, 642, 1313, 1339, 1738, 1814, 1919, 2139
NlaIV	GGNNCC	5 cut(s)	600, 975, 1803, 1858, 2141
NmuCI	GTSAC	1 cut(s)	2021
NspI	RCATGY	1 cut(s)	1919
NspV	TTCGAA	2 cut(s)	131, 1720
PaeI	GCATGC	1 cut(s)	1919
PaeR7I	CTCGAG	1 cut(s)	1124
PagI	TCATGA	1 cut(s)	280
PciSI	GCTCTTC	2 cut(s)	405, 1554
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PctI	GAATGC	4 cut(s)	490, 857, 1231, 1716
PfeI	GAWTC	3 cut(s)	560, 1031, 2035
PflMI	CCANNNNNTGG	1 cut(s)	1659
PfoI	TCCNGGA	1 cut(s)	181
PleI	GAGTC	4 cut(s)	895, 964, 1424, 1885
PluTI	GGCGCC	1 cut(s)	2143
PpsI	GAGTC	4 cut(s)	895, 964, 1424, 1885
Ppu21I	YACGTR	1 cut(s)	2021
Psp6I	CCWGG	3 cut(s)	181, 1508, 1999
PspFI	CCCAGC	1 cut(s)	31
PspGI	CCWGG	3 cut(s)	181, 1508, 1999
PspN4I	GGNNCC	5 cut(s)	600, 975, 1803, 1858, 2141
PspPI	GGNCC	6 cut(s)	599, 801, 1278, 1590, 1801, 2010
PspXI	VCTCGAGB	1 cut(s)	1124
PstI	CTGCAG	3 cut(s)	16, 708, 1765
PsuI	RGATCY	2 cut(s)	979, 2041
RsaI	GTAC	5 cut(s)	145, 975, 1027, 1224, 1888
RsaNI	GTAC	5 cut(s)	144, 974, 1026, 1223, 1887
RseI	CAYNNNNRTG	1 cut(s)	1236
SapI	GCTCTTC	2 cut(s)	405, 1554
SaqAI	TTAA	6 cut(s)	288, 342, 594, 930, 1070, 1274
Sau96I	GGNCC	6 cut(s)	599, 801, 1278, 1590, 1801, 2010
SchI	GAGTC	4 cut(s)	896, 965, 1424, 1886
ScrFI	CCNGG	6 cut(s)	183, 1281, 1282, 1510, 1520, 2001
SduI	GDGCHC	3 cut(s)	220, 1220, 2125
SfaNI	GCATC	4 cut(s)	850, 1258, 1492, 1973
SfcI	CTRYAG	4 cut(s)	12, 704, 1143, 1761
SfoI	GGCGCC	1 cut(s)	2141
Sfr274I	CTCGAG	1 cut(s)	1124
SfuI	TTCGAA	2 cut(s)	131, 1720
SinI	GGWCC	2 cut(s)	599, 1801
SlaI	CTCGAG	1 cut(s)	1124
SmaI	CCCGGG	1 cut(s)	1282
SmiMI	CAYNNNNRTG	1 cut(s)	1236
SmlI	CTYRAG	5 cut(s)	953, 1113, 1124, 1940, 2060
SmoI	CTYRAG	5 cut(s)	953, 1113, 1124, 1940, 2060
SphI	GCATGC	1 cut(s)	1919
Sse9I	AATT	5 cut(s)	133, 380, 527, 661, 1968
SsiI	CCGC	6 cut(s)	5, 74, 555, 746, 1209, 1212
SspDI	GGCGCC	1 cut(s)	2139
SspI	AATATT	1 cut(s)	1369
SspMI	CTAG	6 cut(s)	1100, 1109, 1172, 1182, 1256, 2039
StyD4I	CCNGG	6 cut(s)	181, 1279, 1280, 1508, 1518, 1999
StyI	CCWWGG	1 cut(s)	1226
TaaI	ACNGT	2 cut(s)	1144, 1222
TaiI	ACGT	2 cut(s)	125, 2023
TaqI	TCGA	6 cut(s)	131, 368, 984, 1125, 1602, 1720
TasI	AATT	5 cut(s)	133, 380, 527, 661, 1968
TatI	WGTACW	2 cut(s)	143, 1025
TauI	GCSGC	1 cut(s)	1212
TfiI	GAWTC	3 cut(s)	560, 1031, 2035
Tru1I	TTAA	6 cut(s)	288, 342, 594, 930, 1070, 1274
Tru9I	TTAA	6 cut(s)	288, 342, 594, 930, 1070, 1274
TscAI	CASTG	5 cut(s)	144, 635, 1211, 1225, 1402
TseFI	GTSAC	1 cut(s)	2021
Tsp45I	GTSAC	1 cut(s)	2021
TspDTI	ATGAA	9 cut(s)	417, 423, 474, 1277, 1352, 1404, 1751, 1808, 1822
TspGWI	ACGGA	2 cut(s)	992, 2034
TspMI	CCCGGG	1 cut(s)	1280
TspRI	CASTG	5 cut(s)	144, 635, 1211, 1225, 1402
Van91I	CCANNNNNTGG	1 cut(s)	1659
VneI	GTGCAC	2 cut(s)	1216, 2121
VpaK11BI	GGWCC	2 cut(s)	599, 1801
XagI	CCTNNNNNAGG	1 cut(s)	1058
XapI	RAATTY	1 cut(s)	133
XbaI	TCTAGA	2 cut(s)	1255, 2038
XceI	RCATGY	1 cut(s)	1919
XcmI	CCANNNNNNNNNTGG	3 cut(s)	967, 984, 1506
XhoI	CTCGAG	1 cut(s)	1124
XmaI	CCCGGG	1 cut(s)	1280
XspI	CTAG	6 cut(s)	1100, 1109, 1172, 1182, 1256, 2039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.