pycom15g03140

Transmembrane protein 147-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0016163
Physical Location & Seq
Forward (+)
1960891 .. 1962984
2094 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 870 bp
ATGAAAAAACCACCAACCTTTTGTCCGTTATCTGTATGTTTCGGTTTGTCCGCCGGCCCATTACCACTAACAGCTCAAATCCGAACGAACGGGTCCTCAACTCACCCAAATTCTCGTCGAGAATCGAGATCGCACTGCGAGATTTCGAAGAAGAAGACGGAGCGAAATGACGGTGTTTCACTTCTTCAACTGCGCCATCCTGACGTTCGGCCCTCACGCCGTCTACTACTCCGCCACGCCGCTCGATCGGAGTACGATACGCTCGGTACTTCCATCAAAGCAGCTTTGGTTTATCTCGGAACAGCTTTGGTGAAGCTGGTTTGTTTGGCAACTTTTCTGAAGGTATCTGACAATGAGAGCTTCGATCCGTATCAGGAATTGTTGAAAGCTTTAATCGGTTTTATAGACGTTGCTGGACTTTACTATGCTTTGACTCAGCTGACCCACAGGAATATCTCTCAGAATCATAAATTTCAAGCTGTGGGACTTGGATGGGCTTTTGCTGATTCTGTTCTTCATAGATTGGCACCGCTATGGGTGGGTGCTAGAGGACTAGAATTCACCTGGGATTACATTCTCCAAGGCCTTGAAGCAAATGCCAATCTGGTCTTGAGTATATCCCTTGCTGCATTTGGATCTTTGATGTGGCTTCGGAAAAACAAGCCTAAGATTATGATTCCTTTAATATACGTATGTGCAGGAGTTGTGGCAACCATGCCATCTATCACAAGCTATCTGAGGCGAGGCCTGGGTTGGCAATTTCCGGATGTGGTGGTGTTTGAACTAGGTACCTCTCTATTGATGGCCCTCATCAGTTGGCAGCTCTTCGCTTATTGTCAGAGACCCTCTACCCGAAACAACCAATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2053

Protein Analysis

290

Amino Acids

32.21

Weight (kDa)

9.74

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2053 PF09767 83 - 217 7e-46 Predicted membrane protein (DUF2053)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47640
fragaria_vesca FvH4_2g40630
malus_domestica MD08G1039400.v1.1 MD15G1034100.v1.1
prunus_persica Prupe.1G387900_v2.0.a1
pyrus_communis pycom08g03150 pycom15g03140
rosa_chinensis RchiOBHm_Chr6g0300041
rosa_laevigata RLG00000011370
rosa_multiflora Rmu_sc0010665.1_g000003
rosa_roxburghii Rroxscaffold_7G00168170
rosa_rugosa Rorug06G0293800
rosa_samantha Rh6BG413700 Rh6DG406400
rosa_wichuraiana Rw6G035480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 788
AccB1I GGYRCC 2 cut(s) 526, 788
AccBSI CCGCTC 1 cut(s) 242
AccI GTMKAC 1 cut(s) 223
AccIII TCCGGA 1 cut(s) 763
AciI CCGC 4 cut(s) 51, 232, 240, 530
AclWI GGATC 2 cut(s) 359, 643
AcsI RAATTY 3 cut(s) 109, 470, 557
AcuI CTGAAG 1 cut(s) 359
AfaI GTAC 3 cut(s) 254, 268, 790
AgsI TTSAA 5 cut(s) 188, 385, 476, 590, 782
AjnI CCWGG 2 cut(s) 563, 747
Alw26I GTCTC 1 cut(s) 835
AlwI GGATC 2 cut(s) 359, 643
Aor13HI TCCGGA 1 cut(s) 763
AoxI GGCC 5 cut(s) 55, 209, 583, 745, 804
ApeKI GCWGC 3 cut(s) 281, 626, 820
ApoI RAATTY 3 cut(s) 109, 470, 557
Asp718I GGTACC 1 cut(s) 788
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 4 cut(s) 56, 93, 210, 805
AsuHPI GGTGA 3 cut(s) 95, 322, 553
AsuII TTCGAA 1 cut(s) 146
AvaII GGWCC 1 cut(s) 93
BanI GGYRCC 2 cut(s) 526, 788
BbsI GAAGAC 1 cut(s) 161
BbvI GCAGC 3 cut(s) 293, 613, 832
BccI CCATC 5 cut(s) 204, 281, 486, 727, 796
BceAI ACGGC 1 cut(s) 204
BciT130I CCWGG 2 cut(s) 565, 749
BcoDI GTCTC 1 cut(s) 835
BfaI CTAG 3 cut(s) 546, 554, 785
BisI GCNGC 4 cut(s) 240, 282, 627, 821
BlsI GCNGC 4 cut(s) 241, 283, 628, 822
Bme1390I CCNGG 2 cut(s) 565, 749
Bme18I GGWCC 1 cut(s) 93
BmgT120I GGNCC 4 cut(s) 56, 93, 210, 805
BmiI GGNNCC 3 cut(s) 94, 528, 790
BmrFI CCNGG 2 cut(s) 565, 749
BpiI GAAGAC 1 cut(s) 161
Bpu14I TTCGAA 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 631
BsaAI YACGTR 1 cut(s) 691
BsaBI GATNNNNATC 1 cut(s) 369
BsaI GGTCTC 1 cut(s) 835
BsaJI CCNNGG 3 cut(s) 564, 580, 748
BsaWI WCCGGW 1 cut(s) 763
Bse118I RCCGGY 1 cut(s) 53
Bse8I GATNNNNATC 1 cut(s) 369
BseAI TCCGGA 1 cut(s) 763
BseBI CCWGG 2 cut(s) 565, 749
BseDI CCNNGG 3 cut(s) 564, 580, 748
BseGI GGATG 3 cut(s) 196, 497, 772
BseJI GATNNNNATC 1 cut(s) 369
BseMII CTCAG 3 cut(s) 449, 473, 728
BseXI GCAGC 3 cut(s) 293, 613, 832
BsgI GTGCAG 1 cut(s) 717
Bsh1285I CGRYCG 1 cut(s) 248
BshFI GGCC 5 cut(s) 57, 211, 585, 747, 806
BshNI GGYRCC 2 cut(s) 526, 788
BsiEI CGRYCG 1 cut(s) 248
BsiSI CCGG 2 cut(s) 54, 764
BslFI GGGAC 1 cut(s) 498
BsmAI GTCTC 1 cut(s) 835
BsmFI GGGAC 1 cut(s) 498
BsnI GGCC 5 cut(s) 57, 211, 585, 747, 806
Bso31I GGTCTC 1 cut(s) 835
Bsp119I TTCGAA 1 cut(s) 146
Bsp13I TCCGGA 1 cut(s) 763
Bsp143I GATC 4 cut(s) 128, 245, 364, 635
BspACI CCGC 4 cut(s) 51, 232, 240, 530
BspANI GGCC 5 cut(s) 57, 211, 585, 747, 806
BspCNI CTCAG 3 cut(s) 448, 472, 729
BspEI TCCGGA 1 cut(s) 763
BspLI GGNNCC 3 cut(s) 94, 528, 790
BspPI GGATC 2 cut(s) 359, 643
BspQI GCTCTTC 1 cut(s) 830
BspT104I TTCGAA 1 cut(s) 146
BspT107I GGYRCC 2 cut(s) 526, 788
BspTNI GGTCTC 1 cut(s) 835
BsrBI CCGCTC 1 cut(s) 242
BsrFI RCCGGY 1 cut(s) 53
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 3 cut(s) 564, 580, 748
BssMI GATC 4 cut(s) 128, 245, 364, 635
BssT1I CCWWGG 1 cut(s) 580
Bst2UI CCWGG 2 cut(s) 565, 749
Bst4CI ACNGT 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 830
BstBAI YACGTR 1 cut(s) 691
BstBI TTCGAA 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 4 cut(s) 435, 459, 666, 737
BstF5I GGATG 3 cut(s) 196, 497, 772
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 4 cut(s) 131, 248, 367, 638
BstMAI GTCTC 1 cut(s) 835
BstMBI GATC 4 cut(s) 128, 245, 364, 635
BstMCI CGRYCG 1 cut(s) 248
BstNI CCWGG 2 cut(s) 565, 749
BstSCI CCNGG 2 cut(s) 563, 747
BstSNI TACGTA 1 cut(s) 691
BstV1I GCAGC 3 cut(s) 293, 613, 832
BstV2I GAAGAC 1 cut(s) 161
BstX2I RGATCY 1 cut(s) 635
BstYI RGATCY 1 cut(s) 635
BsuRI GGCC 5 cut(s) 57, 211, 585, 747, 806
BtsCI GGATG 3 cut(s) 196, 497, 772
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 55
CfoI GCGC 1 cut(s) 195
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 4 cut(s) 56, 93, 210, 805
Csp6I GTAC 3 cut(s) 253, 267, 789
CviAII CATG 1 cut(s) 715
CviQI GTAC 3 cut(s) 253, 267, 789
DdeI CTNAG 4 cut(s) 435, 459, 666, 737
DpnI GATC 4 cut(s) 130, 247, 366, 637
DpnII GATC 4 cut(s) 128, 245, 364, 635
Eam1104I CTCTTC 1 cut(s) 830
EarI CTCTTC 1 cut(s) 830
EciI GGCGGA 2 cut(s) 40, 221
Eco105I TACGTA 1 cut(s) 691
Eco130I CCWWGG 1 cut(s) 580
Eco147I AGGCCT 2 cut(s) 585, 747
Eco31I GGTCTC 1 cut(s) 835
Eco47I GGWCC 1 cut(s) 93
Eco57I CTGAAG 1 cut(s) 359
EcoO109I RGGNCCY 1 cut(s) 93
EcoRI GAATTC 1 cut(s) 557
EcoRII CCWGG 2 cut(s) 563, 747
EcoT14I CCWWGG 1 cut(s) 580
ErhI CCWWGG 1 cut(s) 580
FaeI CATG 1 cut(s) 718
FaqI GGGAC 1 cut(s) 498
FatI CATG 1 cut(s) 714
FblI GTMKAC 1 cut(s) 223
Fnu4HI GCNGC 4 cut(s) 240, 282, 627, 821
FokI GGATG 3 cut(s) 183, 504, 779
Fsp4HI GCNGC 4 cut(s) 240, 282, 627, 821
FspBI CTAG 3 cut(s) 546, 554, 785
GlaI GCGC 1 cut(s) 194
GluI GCNGC 4 cut(s) 240, 282, 627, 821
HaeIII GGCC 5 cut(s) 57, 211, 585, 747, 806
HapII CCGG 2 cut(s) 54, 764
HhaI GCGC 1 cut(s) 195
Hin1II CATG 1 cut(s) 718
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HindIII AAGCTT 1 cut(s) 387
HinfI GANTC 5 cut(s) 122, 433, 463, 506, 676
HpaII CCGG 2 cut(s) 54, 764
HphI GGTGA 3 cut(s) 95, 322, 553
Hpy166II GTNNAC 1 cut(s) 224
Hpy188I TCNGA 9 cut(s) 83, 250, 299, 339, 349, 462, 654, 738, 840
Hpy188III TCNNGA 6 cut(s) 119, 126, 200, 374, 610, 764
Hpy8I GTNNAC 1 cut(s) 224
Hpy99I CGWCG 1 cut(s) 120
HpyAV CCTTC 1 cut(s) 334
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4IV ACGT 3 cut(s) 204, 408, 690
HpyCH4V TGCA 2 cut(s) 629, 698
HpyF3I CTNAG 4 cut(s) 435, 459, 666, 737
HpySE526I ACGT 3 cut(s) 204, 408, 690
Hsp92II CATG 1 cut(s) 718
HspAI GCGC 1 cut(s) 193
Kpn2I TCCGGA 1 cut(s) 763
KpnI GGTACC 1 cut(s) 792
KroI GCCGGC 1 cut(s) 53
KroNI GCCGGC 1 cut(s) 55
Kzo9I GATC 4 cut(s) 128, 245, 364, 635
LguI GCTCTTC 1 cut(s) 830
LmnI GCTCC 1 cut(s) 160
Lsp1109I GCAGC 3 cut(s) 293, 613, 832
MaeI CTAG 3 cut(s) 546, 554, 785
MaeII ACGT 3 cut(s) 204, 408, 690
MalI GATC 4 cut(s) 130, 247, 366, 637
MbiI CCGCTC 1 cut(s) 242
MboI GATC 4 cut(s) 128, 245, 364, 635
MboII GAAGA 6 cut(s) 160, 163, 166, 176, 506, 817
MflI RGATCY 1 cut(s) 635
MluCI AATT 5 cut(s) 109, 377, 470, 557, 758
MlyI GAGTC 1 cut(s) 427
MnlI CCTC 8 cut(s) 106, 223, 542, 732, 737, 802, 818, 856
MroI TCCGGA 1 cut(s) 763
MroNI GCCGGC 1 cut(s) 53
MseI TTAA 2 cut(s) 392, 683
MslI CAYNNNNRTG 1 cut(s) 532
MspA1I CMGCKG 1 cut(s) 439
MspI CCGG 2 cut(s) 54, 764
MspR9I CCNGG 2 cut(s) 565, 749
MvaI CCWGG 2 cut(s) 565, 749
NaeI GCCGGC 1 cut(s) 55
NdeII GATC 4 cut(s) 128, 245, 364, 635
NgoMIV GCCGGC 1 cut(s) 53
NlaIII CATG 1 cut(s) 718
NlaIV GGNNCC 3 cut(s) 94, 528, 790
NspV TTCGAA 1 cut(s) 146
PceI AGGCCT 2 cut(s) 585, 747
PciSI GCTCTTC 1 cut(s) 830
PdiI GCCGGC 1 cut(s) 55
PfeI GAWTC 4 cut(s) 122, 463, 506, 676
PkrI GCNGC 4 cut(s) 241, 283, 628, 822
Ple19I CGATCG 1 cut(s) 248
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
Ppu21I YACGTR 1 cut(s) 691
PpuMI RGGWCCY 1 cut(s) 93
Psp5II RGGWCCY 1 cut(s) 93
Psp6I CCWGG 2 cut(s) 563, 747
PspGI CCWGG 2 cut(s) 563, 747
PspN4I GGNNCC 3 cut(s) 94, 528, 790
PspPI GGNCC 4 cut(s) 56, 93, 210, 805
PspPPI RGGWCCY 1 cut(s) 93
PsuI RGATCY 1 cut(s) 635
PvuI CGATCG 1 cut(s) 248
PvuII CAGCTG 1 cut(s) 439
RsaI GTAC 3 cut(s) 254, 268, 790
RsaNI GTAC 3 cut(s) 253, 267, 789
RseI CAYNNNNRTG 1 cut(s) 532
SapI GCTCTTC 1 cut(s) 830
SaqAI TTAA 2 cut(s) 392, 683
SatI GCNGC 4 cut(s) 240, 282, 627, 821
Sau3AI GATC 4 cut(s) 128, 245, 364, 635
Sau96I GGNCC 4 cut(s) 56, 93, 210, 805
SchI GAGTC 1 cut(s) 427
ScrFI CCNGG 2 cut(s) 565, 749
SfuI TTCGAA 1 cut(s) 146
SinI GGWCC 1 cut(s) 93
SmiMI CAYNNNNRTG 1 cut(s) 532
SmlI CTYRAG 1 cut(s) 610
SmoI CTYRAG 1 cut(s) 610
SnaBI TACGTA 1 cut(s) 691
Sse9I AATT 5 cut(s) 109, 377, 470, 557, 758
SseBI AGGCCT 2 cut(s) 585, 747
SsiI CCGC 4 cut(s) 51, 232, 240, 530
SspMI CTAG 3 cut(s) 546, 554, 785
StuI AGGCCT 2 cut(s) 585, 747
StyD4I CCNGG 2 cut(s) 563, 747
StyI CCWWGG 1 cut(s) 580
TaaI ACNGT 1 cut(s) 173
TaiI ACGT 3 cut(s) 207, 411, 693
TaqI TCGA 5 cut(s) 118, 125, 146, 244, 363
TasI AATT 5 cut(s) 109, 377, 470, 557, 758
TauI GCSGC 1 cut(s) 242
TfiI GAWTC 4 cut(s) 122, 463, 506, 676
Tru1I TTAA 2 cut(s) 392, 683
Tru9I TTAA 2 cut(s) 392, 683
TscAI CASTG 1 cut(s) 140
TseI GCWGC 3 cut(s) 281, 626, 820
TspDTI ATGAA 2 cut(s) 17, 506
TspGWI ACGGA 3 cut(s) 15, 173, 357
TspRI CASTG 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 93
XapI RAATTY 3 cut(s) 109, 470, 557
XmiI GTMKAC 1 cut(s) 223
XspI CTAG 3 cut(s) 546, 554, 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.