Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011529

Physical Location & Seq

Genomic Coordinates Reverse (-)

1965686 .. 1968373

Gene Structure 2688 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGCAGAGGAAGCTCGGAATGTGAGGAGCCCTCATTTTTTTGCGTTTTATTCTGCTGATTTGAGCTCTGAAAGACTGAAAATCCCAGAAAGATTCATGAGACACATGGAAGGCAAAACATCTGGGTTAGTTGCGTTGTTCGGCCCTAGCGGCAGTGCATGGAGTGTTGAATTGATTGAACAGAATGGTGGTTTGTTCTTGCATCATGGGTGGCCGGCATTTGTGAGAGACCATTATGTGGAATGCGGGGACTTCTTGATTTTCAGATACGATGGTGATTTGCGTTTCACCGTGCTAATTTTTGATCAAAGTGCATGTGAGAAAGAGGCTGCATTTCGTTTTGGATACGGCCAAGACTCCAGGAACTTTGAGAAGTATATGTATATGGGACGAAAAAGGGGAAGGGGGGAGGTCGCATCATCTGGCAATAAGCTGGTTGATGGTGCGGTGAAGAAGATTAGAAACGGTTCGTCTCAATTCTGGTCAGAATGCATTGGTGAGGGTCGAGAAGAAGAAACTTGTTCCACAGAAAAAAATCCACATGAGAATCCTGGTTTGGATGTTGTTTCGTATAAAGCAAAGGCATCGATCCAAAATATGTGTGGAAAAGGAGATGGATTAAATGTTAATGGTAGAGTTTGTATGCAGATGTCATCAGCTCATGAAGTAGCACCATCATGTAGTTCCTCTAACCCTTATTTCGTGAGAATCATAAAAAGTTTCAACATCAGTGGTTCATATACTCTGAATATCCCATATAAATTTTCAGTGGCACATTTACCAAACTGCAAAGTAAAGATTGTCCTTCAAAATTGGAAAGGAGAAAGTTGGACCGTCAATTCTGTGCCAAGTAATAGAGTGCATACTAGTCACACTCTTTGTGGAGGATGGATGGCGTTTGTTCGTTATAATGACATACAGCTGGGAGATATCTGCACTTTTGAACTTGTGCGTGAGTGTGAATTCCGTGTCCACATTCAAAAGGGAGAAACATCTAGTTGGTTAAGTCCGGGGCTAGCTGTCACTACGCATAAAACTATCAAAGGCTTGTCAAAGAAAATGAAAGGGAACTCTCCCAAAGTCCTTTCAAAGAGTATAAGAGAGATAGCTGATAAACTATCATCAAAGAAGGATCGATCGAGTCCAAGAATCAGGAAGACGCTGCTTTCATTAATGACACAAGGAAATATGGCAGCACATCAAGATCTCTTACTAAAGCTGCACTTGCTCAGTCAAAAGTTGCTAGTAAAAAGTTGGGGAGACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

423

Amino Acids

47.36

Weight (kDa)

9.27

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	18 - 103	4.8e-16	B3 DNA binding domain
B3	PF02362	247 - 327	2.9e-13	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40640
malus_domestica	MD08G1039600.v1.1 MD15G1034200.v1.1
prunus_persica	Prupe.1G388200_v2.0.a1 Prupe.1G388200_v2.0.a1
pyrus_communis	pycom05g03900 pycom08g03170 pycom13g02130 pycom15g03150
rosa_chinensis	RchiOBHm_Chr6g0300031
rosa_laevigata	RLG00000011371
rosa_multiflora	Rmu_co8370125.1_g000001 Rmu_sc0010665.1_g000002
rosa_roxburghii	Rroxscaffold_7G00168180
rosa_rugosa	Rorug06G0293700
rosa_samantha	Rh6AG405300 Rh6BG413600 Rh6CG420700 Rh6DG406300
rosa_wichuraiana	Rw6G035470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	909
AccB7I	CCANNNNNTGG	1 cut(s)	238
AciI	CCGC	3 cut(s)	150, 246, 446
AclWI	GGATC	2 cut(s)	583, 1140
AcoI	YGGCCR	2 cut(s)	212, 349
AcsI	RAATTY	2 cut(s)	761, 962
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	7 cut(s)	170, 179, 724, 809, 944, 980, 1089
AhlI	ACTAGT	1 cut(s)	866
AjnI	CCWGG	2 cut(s)	359, 550
AjuI	GAANNNNNNNTTGG	2 cut(s)	539, 571
AluBI	AGCT	8 cut(s)	14, 66, 433, 659, 922, 1019, 1109, 1219
AluI	AGCT	8 cut(s)	14, 66, 433, 659, 922, 1019, 1109, 1219
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	4 cut(s)	94, 222, 477, 1254
AlwI	GGATC	2 cut(s)	583, 1140
AoxI	GGCC	3 cut(s)	142, 212, 349
ApeKI	GCWGC	4 cut(s)	329, 1162, 1193, 1219
ApoI	RAATTY	2 cut(s)	761, 962
AseI	ATTAAT	1 cut(s)	1172
Asp700I	GAANNNNTTC	1 cut(s)	466
AspS9I	GGNCC	2 cut(s)	143, 831
AsuC2I	CCSGG	1 cut(s)	1011
AsuHPI	GGTGA	4 cut(s)	280, 287, 460, 509
AsuNHI	GCTAGC	1 cut(s)	1015
AvaII	GGWCC	1 cut(s)	831
BaeI	ACNNNNGTAYC	2 cut(s)	259, 292
BanII	GRGCYC	2 cut(s)	32, 68
BbsI	GAAGAC	1 cut(s)	1163
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	4 cut(s)	316, 1149, 1205, 1206
BccI	CCATC	6 cut(s)	266, 434, 608, 682, 882, 886
BceAI	ACGGC	1 cut(s)	364
BcgI	CGANNNNNNTGC	2 cut(s)	567, 601
BciT130I	CCWGG	2 cut(s)	361, 552
BciVI	GTATCC	1 cut(s)	338
BclI	TGATCA	1 cut(s)	304
BcnI	CCSGG	1 cut(s)	1011
BcoDI	GTCTC	4 cut(s)	94, 222, 477, 1254
BcuI	ACTAGT	1 cut(s)	866
BfaI	CTAG	5 cut(s)	147, 867, 996, 1016, 1244
BfuI	GTATCC	1 cut(s)	338
BglI	GCCNNNNNGGC	1 cut(s)	150
BglII	AGATCT	1 cut(s)	1204
BisI	GCNGC	5 cut(s)	151, 330, 1163, 1194, 1220
BlsI	GCNGC	5 cut(s)	152, 331, 1164, 1195, 1221
Bme1390I	CCNGG	3 cut(s)	361, 552, 1011
Bme18I	GGWCC	1 cut(s)	831
BmgT120I	GGNCC	2 cut(s)	143, 831
BmiI	GGNNCC	1 cut(s)	29
BmrFI	CCNGG	3 cut(s)	361, 552, 1011
BmsI	GCATC	3 cut(s)	211, 425, 593
BmtI	GCTAGC	1 cut(s)	1019
BpiI	GAAGAC	1 cut(s)	1163
BplI	GAGNNNNNCTC	2 cut(s)	16, 48
BpmI	CTGGAG	1 cut(s)	343
BpuMI	CCSGG	1 cut(s)	1011
Bsa29I	ATCGAT	2 cut(s)	587, 1135
BsaI	GGTCTC	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	1010
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse118I	RCCGGY	1 cut(s)	214
BseBI	CCWGG	2 cut(s)	361, 552
BseCI	ATCGAT	2 cut(s)	587, 1135
BseDI	CCNNGG	1 cut(s)	1010
BseGI	GGATG	3 cut(s)	565, 893, 897
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	1243
BseRI	GAGGAG	1 cut(s)	40
BseXI	GCAGC	4 cut(s)	316, 1149, 1205, 1206
BseYI	CCCAGC	1 cut(s)	922
BsgI	GTGCAG	2 cut(s)	919, 1205
Bsh1285I	CGRYCG	1 cut(s)	1139
BshFI	GGCC	3 cut(s)	144, 214, 351
BshVI	ATCGAT	2 cut(s)	587, 1135
BsiEI	CGRYCG	1 cut(s)	1139
BsiHKAI	GWGCWC	1 cut(s)	68
BsiSI	CCGG	2 cut(s)	215, 1010
BslFI	GGGAC	2 cut(s)	263, 402
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	4 cut(s)	94, 222, 477, 1254
BsmBI	CGTCTC	1 cut(s)	477
BsmFI	GGGAC	2 cut(s)	263, 402
BsmI	GAATGC	2 cut(s)	248, 494
BsnI	GGCC	3 cut(s)	144, 214, 351
Bso31I	GGTCTC	1 cut(s)	222
Bsp1286I	GDGCHC	2 cut(s)	32, 68
Bsp143I	GATC	5 cut(s)	304, 588, 1132, 1136, 1204
BspACI	CCGC	3 cut(s)	150, 246, 446
BspANI	GGCC	3 cut(s)	144, 214, 351
BspCNI	CTCAG	1 cut(s)	1242
BspDI	ATCGAT	2 cut(s)	587, 1135
BspHI	TCATGA	2 cut(s)	96, 661
BspLI	GGNNCC	1 cut(s)	29
BspOI	GCTAGC	1 cut(s)	1019
BspPI	GGATC	2 cut(s)	583, 1140
BspTNI	GGTCTC	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	214
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	1010
BssMI	GATC	5 cut(s)	304, 588, 1132, 1136, 1204
Bst2UI	CCWGG	2 cut(s)	361, 552
Bst4CI	ACNGT	4 cut(s)	292, 467, 835, 1265
BstC8I	GCNNGC	2 cut(s)	216, 1017
BstDEI	CTNAG	1 cut(s)	1229
BstF5I	GGATG	3 cut(s)	565, 893, 897
BstKTI	GATC	5 cut(s)	307, 591, 1135, 1139, 1207
BstMAI	GTCTC	4 cut(s)	94, 222, 477, 1254
BstMBI	GATC	5 cut(s)	304, 588, 1132, 1136, 1204
BstMCI	CGRYCG	1 cut(s)	1139
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 150, 1225
BstNI	CCWGG	2 cut(s)	361, 552
BstNSI	RCATGY	1 cut(s)	318
BstSCI	CCNGG	3 cut(s)	359, 550, 1009
BstV1I	GCAGC	4 cut(s)	316, 1149, 1205, 1206
BstV2I	GAAGAC	1 cut(s)	1163
BstX2I	RGATCY	1 cut(s)	1204
BstYI	RGATCY	1 cut(s)	1204
Bsu15I	ATCGAT	2 cut(s)	587, 1135
BsuI	GTATCC	1 cut(s)	338
BsuRI	GGCC	3 cut(s)	144, 214, 351
BsuTUI	ATCGAT	2 cut(s)	587, 1135
BtsCI	GGATG	3 cut(s)	565, 893, 897
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	3 cut(s)	160, 736, 774
Cac8I	GCNNGC	2 cut(s)	216, 1017
CciI	TCATGA	2 cut(s)	96, 661
Cfr10I	RCCGGY	1 cut(s)	214
Cfr13I	GGNCC	2 cut(s)	143, 831
ClaI	ATCGAT	2 cut(s)	587, 1135
CseI	GACGC	1 cut(s)	1168
CspCI	CAANNNNNGTGG	2 cut(s)	712, 747
CviAII	CATG	8 cut(s)	97, 106, 159, 206, 315, 542, 662, 678
DdeI	CTNAG	1 cut(s)	1229
DpnI	GATC	5 cut(s)	306, 590, 1134, 1138, 1206
DpnII	GATC	5 cut(s)	304, 588, 1132, 1136, 1204
EaeI	YGGCCR	2 cut(s)	212, 349
Ecl136II	GAGCTC	1 cut(s)	66
Eco24I	GRGCYC	2 cut(s)	32, 68
Eco31I	GGTCTC	1 cut(s)	222
Eco32I	GATATC	1 cut(s)	931
Eco47I	GGWCC	1 cut(s)	831
Eco53kI	GAGCTC	1 cut(s)	66
EcoICRI	GAGCTC	1 cut(s)	66
EcoRI	GAATTC	1 cut(s)	962
EcoRII	CCWGG	2 cut(s)	359, 550
EcoRV	GATATC	1 cut(s)	931
EcoT22I	ATGCAT	1 cut(s)	494
EcoT38I	GRGCYC	2 cut(s)	32, 68
Esp3I	CGTCTC	1 cut(s)	477
FaeI	CATG	8 cut(s)	100, 109, 162, 209, 318, 545, 665, 681
FalI	AAGNNNNNCTT	2 cut(s)	1208, 1240
FaqI	GGGAC	2 cut(s)	263, 402
FatI	CATG	8 cut(s)	96, 105, 158, 205, 314, 541, 661, 677
FauI	CCCGC	1 cut(s)	239
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	5 cut(s)	151, 330, 1163, 1194, 1220
FokI	GGATG	3 cut(s)	572, 900, 904
FriOI	GRGCYC	2 cut(s)	32, 68
Fsp4HI	GCNGC	5 cut(s)	151, 330, 1163, 1194, 1220
FspBI	CTAG	5 cut(s)	147, 867, 996, 1016, 1244
GluI	GCNGC	5 cut(s)	151, 330, 1163, 1194, 1220
GsaI	CCCAGC	1 cut(s)	926
GsuI	CTGGAG	1 cut(s)	343
HaeIII	GGCC	3 cut(s)	144, 214, 351
HapII	CCGG	2 cut(s)	215, 1010
HgaI	GACGC	1 cut(s)	1168
Hin1II	CATG	8 cut(s)	100, 109, 162, 209, 318, 545, 665, 681
HinfI	GANTC	6 cut(s)	93, 356, 547, 708, 1141, 1149
HpaII	CCGG	2 cut(s)	215, 1010
HphI	GGTGA	4 cut(s)	280, 287, 460, 509
Hpy166II	GTNNAC	1 cut(s)	973
Hpy188I	TCNGA	5 cut(s)	18, 70, 266, 487, 747
Hpy188III	TCNNGA	7 cut(s)	97, 256, 506, 662, 703, 1153, 1202
Hpy8I	GTNNAC	1 cut(s)	973
HpyAV	CCTTC	4 cut(s)	104, 396, 815, 1123
HpyCH4III	ACNGT	4 cut(s)	292, 467, 835, 1265
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 150, 1225
HpyF3I	CTNAG	1 cut(s)	1229
Hsp92II	CATG	8 cut(s)	100, 109, 162, 209, 318, 545, 665, 681
KroI	GCCGGC	1 cut(s)	214
KroNI	GCCGGC	1 cut(s)	216
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	5 cut(s)	304, 588, 1132, 1136, 1204
LmnI	GCTCC	1 cut(s)	27
Lsp1109I	GCAGC	4 cut(s)	316, 1149, 1205, 1206
LweI	GCATC	3 cut(s)	211, 425, 593
MaeI	CTAG	5 cut(s)	147, 867, 996, 1016, 1244
MaeIII	GTNAC	2 cut(s)	869, 1021
MalI	GATC	5 cut(s)	306, 590, 1134, 1138, 1206
MboI	GATC	5 cut(s)	304, 588, 1132, 1136, 1204
MboII	GAAGA	5 cut(s)	463, 466, 521, 524, 1168
MflI	RGATCY	1 cut(s)	1204
MhlI	GDGCHC	2 cut(s)	32, 68
MluCI	AATT	7 cut(s)	170, 297, 476, 761, 811, 838, 962
MlyI	GAGTC	2 cut(s)	350, 1150
MmeI	TCCRAC	1 cut(s)	809
MnlI	CCTC	7 cut(s)	18, 42, 319, 403, 493, 697, 878
Mph1103I	ATGCAT	1 cut(s)	494
MroNI	GCCGGC	1 cut(s)	214
MroXI	GAANNNNTTC	1 cut(s)	466
MseI	TTAA	5 cut(s)	620, 627, 1004, 1172, 1267
MslI	CAYNNNNRTG	1 cut(s)	676
MspA1I	CMGCKG	1 cut(s)	922
MspI	CCGG	2 cut(s)	215, 1010
MspR9I	CCNGG	3 cut(s)	361, 552, 1011
Mva1269I	GAATGC	2 cut(s)	248, 494
MvaI	CCWGG	2 cut(s)	361, 552
MwoI	GCNNNNNNNGC	3 cut(s)	11, 150, 1225
NaeI	GCCGGC	1 cut(s)	216
NciI	CCSGG	1 cut(s)	1011
NdeII	GATC	5 cut(s)	304, 588, 1132, 1136, 1204
NgoMIV	GCCGGC	1 cut(s)	214
NheI	GCTAGC	1 cut(s)	1015
NlaIII	CATG	8 cut(s)	100, 109, 162, 209, 318, 545, 665, 681
NlaIV	GGNNCC	1 cut(s)	29
NmuCI	GTSAC	2 cut(s)	869, 1021
NsiI	ATGCAT	1 cut(s)	494
NspI	RCATGY	1 cut(s)	318
PagI	TCATGA	2 cut(s)	96, 661
PctI	GAATGC	2 cut(s)	248, 494
PdiI	GCCGGC	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	466
PfeI	GAWTC	4 cut(s)	93, 547, 708, 1149
PflMI	CCANNNNNTGG	1 cut(s)	238
PfoI	TCCNGGA	1 cut(s)	359
PkrI	GCNGC	5 cut(s)	152, 331, 1164, 1195, 1221
Ple19I	CGATCG	1 cut(s)	1139
PleI	GAGTC	2 cut(s)	350, 1149
PpsI	GAGTC	2 cut(s)	350, 1149
PshBI	ATTAAT	1 cut(s)	1172
PsiI	TTATAA	1 cut(s)	909
Psp124BI	GAGCTC	1 cut(s)	68
Psp6I	CCWGG	2 cut(s)	359, 550
PspFI	CCCAGC	1 cut(s)	922
PspGI	CCWGG	2 cut(s)	359, 550
PspN4I	GGNNCC	1 cut(s)	29
PspPI	GGNCC	2 cut(s)	143, 831
PsuI	RGATCY	1 cut(s)	1204
PvuI	CGATCG	1 cut(s)	1139
PvuII	CAGCTG	1 cut(s)	922
RseI	CAYNNNNRTG	1 cut(s)	676
SacI	GAGCTC	1 cut(s)	68
SaqAI	TTAA	5 cut(s)	620, 627, 1004, 1172, 1267
SatI	GCNGC	5 cut(s)	151, 330, 1163, 1194, 1220
Sau3AI	GATC	5 cut(s)	304, 588, 1132, 1136, 1204
Sau96I	GGNCC	2 cut(s)	143, 831
SchI	GAGTC	2 cut(s)	350, 1150
ScrFI	CCNGG	3 cut(s)	361, 552, 1011
SduI	GDGCHC	2 cut(s)	32, 68
SetI	ASST	9 cut(s)	16, 68, 414, 435, 661, 924, 1021, 1111, 1221
SfaNI	GCATC	3 cut(s)	211, 425, 593
SinI	GGWCC	1 cut(s)	831
SmiMI	CAYNNNNRTG	1 cut(s)	676
SpeI	ACTAGT	1 cut(s)	866
Sse9I	AATT	7 cut(s)	170, 297, 476, 761, 811, 838, 962
SsiI	CCGC	3 cut(s)	150, 246, 446
SspMI	CTAG	5 cut(s)	147, 867, 996, 1016, 1244
SstI	GAGCTC	1 cut(s)	68
StyD4I	CCNGG	3 cut(s)	359, 550, 1009
TaaI	ACNGT	4 cut(s)	292, 467, 835, 1265
TaqI	TCGA	4 cut(s)	505, 587, 1135, 1139
TasI	AATT	7 cut(s)	170, 297, 476, 761, 811, 838, 962
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	4 cut(s)	93, 547, 708, 1149
Tru1I	TTAA	5 cut(s)	620, 627, 1004, 1172, 1267
Tru9I	TTAA	5 cut(s)	620, 627, 1004, 1172, 1267
TscAI	CASTG	3 cut(s)	160, 736, 774
TseFI	GTSAC	2 cut(s)	869, 1021
TseI	GCWGC	4 cut(s)	329, 1162, 1193, 1219
Tsp45I	GTSAC	2 cut(s)	869, 1021
TspDTI	ATGAA	5 cut(s)	85, 678, 726, 1076, 1158
TspGWI	ACGGA	1 cut(s)	956
TspRI	CASTG	3 cut(s)	160, 736, 774
Van91I	CCANNNNNTGG	1 cut(s)	238
VpaK11BI	GGWCC	1 cut(s)	831
VspI	ATTAAT	1 cut(s)	1172
XapI	RAATTY	2 cut(s)	761, 962
XceI	RCATGY	1 cut(s)	318
XcmI	CCANNNNNNNNNTGG	1 cut(s)	599
XmnI	GAANNNNTTC	1 cut(s)	466
XspI	CTAG	5 cut(s)	147, 867, 996, 1016, 1244
Zsp2I	ATGCAT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.