pycom15g05640

GATA transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0013620
Physical Location & Seq
Forward (+)
3387437 .. 3389119
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1023 bp
ATGTCGAGCAAGCAAATGATCGATCAACCCCTGAAACTTTTTATATCATCGTCATATAATAATCAAGCTGCAGCTTCATCATGTTCTTCTCTGATCTCATCATTTCCTACTTTCTTTGATTCCTTCGAAGATCAAAGAGCTGGGAGTTCTACTACTACTACTCTTGGTCATGATCACTCACTTCAATATCATCACAAGACTGAAAACCACATGTGGGATTGTGGAACAAGTACTTATGATCAAGCATCCTCGCCATCTTCTTTAGTTCGGCCTCATGTGGTGGACGTTATGAGCACCAAGGACCATAGATTAATGTCAGCATATGCTGATCATGAAAGGGAGATCAATGGTAGAGGAGGAGAGGTGGGTAAAAGTAATAATAATATTAGGCCAAGGGCAGTAAAATGGATGTCCTCCAAGATGAGGTTGATGCAAAAGATGACCAACCCAGATCTCGCGCCAGCCGGTACCACTGAAAATCATATACTTGCAGCTGCTGAGAATGCTGAGCATAAATTCCAAGTTGTACAGCATCAAGAAAATAGTGATCAAACCAGCTTTTCCAGAAATAGCAACAATACTACTCCAGATGTTAGGGTTTGTTCTGATTGTAACACCAGCACAACCCCACTTTGGAGAAGCGGCCCTCGCGGTCCCAAGTCACTATGCAATGCATGTGGAATCCGACAGAGGAAAGCTAGAAGAACCATGGCAGAGGCTGCGGCTGCTGCTGCAAATGGGTTTGTAGTCGGCGCCACTGACACTTCATCTGCCAAGGGTAAGGTGGCCAACAAGGAGAAGAAACCGCGCGGAAGCCATAGTGCTAATGTTACACGATGCAAGAACAAGAGCAAGCTCATTGTCACCGACACTGCATCAGTATCTCCCAACAACAAAATTAATAGTAATAATAATAAGATTTGTTTCAAAGGTTTGGGTTTTCAACGAGTGTTTCCTCAGGATGTTGCTGAAGCTGCAATCCTCCTAATGGAGCTGTCTTGTGGCCTAATCAATCACTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001101 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010114 GO:0010151 GO:0010167 GO:0010187 GO:0010380 GO:0010467 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043610 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090056 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:1902326 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA

Protein Analysis

341

Amino Acids

37.12

Weight (kDa)

9.35

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 201 - 235 9.4e-16 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31930
malus_domestica MD08G1061600.v1.1 MD15G1060100.v1.1
prunus_persica Prupe.1G412000_v2.0.a1
pyrus_communis pycom08g05110 pycom15g05640
rosa_chinensis RchiOBHm_Chr6g0310911
rosa_laevigata RLG00000010451
rosa_multiflora Rmu_co8401939.1_g000001
rosa_roxburghii Rroxscaffold_7G00158190
rosa_rugosa Rorug06G0383900
rosa_samantha Rh6AG497800 Rh6BG507900 Rh6BG508000 Rh6CG514000 Rh6CG514100 Rh6DG500500
rosa_wichuraiana Rw6G043360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 467
AccB1I GGYRCC 2 cut(s) 467, 752
AccII CGCG 4 cut(s) 458, 651, 808, 810
AciI CCGC 5 cut(s) 642, 651, 722, 806, 810
AcoI YGGCCR 1 cut(s) 786
AcsI RAATTY 1 cut(s) 515
AcuI CTGAAG 1 cut(s) 990
AcyI GRCGYC 1 cut(s) 753
AfaI GTAC 3 cut(s) 232, 469, 528
AfiI CCNNNNNNNGG 4 cut(s) 214, 423, 633, 988
AflIII ACRYGT 1 cut(s) 210
AgsI TTSAA 3 cut(s) 185, 928, 944
AluBI AGCT 9 cut(s) 68, 74, 140, 494, 558, 698, 856, 974, 994
AluI AGCT 9 cut(s) 68, 74, 140, 494, 558, 698, 856, 974, 994
Alw21I GWGCWC 1 cut(s) 296
AlwNI CAGNNNCTG 2 cut(s) 497, 719
AoxI GGCC 5 cut(s) 269, 389, 643, 786, 1003
ApeKI GCWGC 9 cut(s) 68, 71, 491, 494, 719, 725, 728, 731, 974
ApoI RAATTY 1 cut(s) 515
AseI ATTAAT 2 cut(s) 311, 900
Asp718I GGTACC 1 cut(s) 467
AspLEI GCGC 3 cut(s) 460, 755, 810
AspS9I GGNCC 3 cut(s) 301, 644, 653
AsuHPI GGTGA 1 cut(s) 856
AsuII TTCGAA 1 cut(s) 126
AvaII GGWCC 2 cut(s) 301, 653
AxyI CCTNAGG 1 cut(s) 957
BalI TGGCCA 1 cut(s) 788
BanI GGYRCC 2 cut(s) 467, 752
Bbv12I GWGCWC 1 cut(s) 296
BbvI GCAGC 9 cut(s) 55, 83, 481, 503, 706, 712, 715, 718, 961
BccI CCATC 1 cut(s) 262
BclI TGATCA 4 cut(s) 172, 238, 328, 547
BfaI CTAG 1 cut(s) 699
BfmI CTRYAG 1 cut(s) 69
BfoI RGCGCY 1 cut(s) 756
BglII AGATCT 1 cut(s) 451
BlpI GCTNAGC 1 cut(s) 507
BmcAI AGTACT 1 cut(s) 232
Bme18I GGWCC 2 cut(s) 301, 653
BmgT120I GGNCC 3 cut(s) 301, 644, 653
BmiI GGNNCC 3 cut(s) 469, 655, 754
BmsI GCATC 5 cut(s) 254, 420, 541, 827, 884
BpmI CTGGAG 1 cut(s) 570
Bpu1102I GCTNAGC 1 cut(s) 507
Bpu14I TTCGAA 1 cut(s) 126
Bsa29I ATCGAT 1 cut(s) 21
BsaHI GRCGYC 1 cut(s) 753
BsaJI CCNNGG 4 cut(s) 297, 392, 708, 774
BsaXI ACNNNNNCTCC 2 cut(s) 348, 378
Bsc4I CCNNNNNNNGG 4 cut(s) 214, 423, 633, 988
Bse118I RCCGGY 1 cut(s) 464
Bse21I CCTNAGG 1 cut(s) 957
Bse3DI GCAATG 1 cut(s) 676
BseCI ATCGAT 1 cut(s) 21
BseDI CCNNGG 4 cut(s) 297, 392, 708, 774
BseGI GGATG 3 cut(s) 245, 414, 967
BseLI CCNNNNNNNGG 4 cut(s) 214, 423, 633, 988
BseMI GCAATG 1 cut(s) 676
BseMII CTCAG 3 cut(s) 489, 498, 971
BseRI GAGGAG 2 cut(s) 369, 372
BseXI GCAGC 9 cut(s) 55, 83, 481, 503, 706, 712, 715, 718, 961
BseYI CCCAGC 1 cut(s) 140
Bsh1236I CGCG 4 cut(s) 458, 651, 808, 810
BshFI GGCC 5 cut(s) 271, 391, 645, 788, 1005
BshNI GGYRCC 2 cut(s) 467, 752
BshVI ATCGAT 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 296
BsiSI CCGG 1 cut(s) 465
BslFI GGGAC 1 cut(s) 639
BslI CCNNNNNNNGG 4 cut(s) 214, 423, 633, 988
BsmFI GGGAC 1 cut(s) 639
BsmI GAATGC 1 cut(s) 508
BsnI GGCC 5 cut(s) 271, 391, 645, 788, 1005
Bsp119I TTCGAA 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 296
Bsp1407I TGTACA 1 cut(s) 526
Bsp1720I GCTNAGC 1 cut(s) 507
Bsp19I CCATGG 1 cut(s) 708
BspACI CCGC 5 cut(s) 642, 651, 722, 806, 810
BspANI GGCC 5 cut(s) 271, 391, 645, 788, 1005
BspCNI CTCAG 3 cut(s) 490, 499, 970
BspDI ATCGAT 1 cut(s) 21
BspFNI CGCG 4 cut(s) 458, 651, 808, 810
BspHI TCATGA 2 cut(s) 169, 331
BspLI GGNNCC 3 cut(s) 469, 655, 754
BspMAI CTGCAG 1 cut(s) 73
BspT104I TTCGAA 1 cut(s) 126
BspT107I GGYRCC 2 cut(s) 467, 752
BsrDI GCAATG 1 cut(s) 676
BsrFI RCCGGY 1 cut(s) 464
BsrGI TGTACA 1 cut(s) 526
BssAI RCCGGY 1 cut(s) 464
BssECI CCNNGG 4 cut(s) 297, 392, 708, 774
BssNI GRCGYC 1 cut(s) 753
BssT1I CCWWGG 4 cut(s) 297, 392, 708, 774
BstACI GRCGYC 1 cut(s) 753
BstAPI GCANNNNNTGC 1 cut(s) 719
BstAUI TGTACA 1 cut(s) 526
BstBI TTCGAA 1 cut(s) 126
BstC8I GCNNGC 3 cut(s) 11, 462, 854
BstDEI CTNAG 3 cut(s) 498, 507, 957
BstDSI CCRYGG 1 cut(s) 708
BstF5I GGATG 3 cut(s) 245, 414, 967
BstFNI CGCG 4 cut(s) 458, 651, 808, 810
BstH2I RGCGCY 1 cut(s) 756
BstHHI GCGC 3 cut(s) 460, 755, 810
BstMWI GCNNNNNNNGC 7 cut(s) 503, 648, 719, 725, 728, 731, 974
BstNSI RCATGY 2 cut(s) 214, 678
BstSFI CTRYAG 1 cut(s) 69
BstUI CGCG 4 cut(s) 458, 651, 808, 810
BstV1I GCAGC 9 cut(s) 55, 83, 481, 503, 706, 712, 715, 718, 961
BstX2I RGATCY 1 cut(s) 451
BstYI RGATCY 1 cut(s) 451
Bsu15I ATCGAT 1 cut(s) 21
Bsu36I CCTNAGG 1 cut(s) 957
BsuRI GGCC 5 cut(s) 271, 391, 645, 788, 1005
BsuTUI ATCGAT 1 cut(s) 21
BtgI CCRYGG 1 cut(s) 708
BtsCI GGATG 3 cut(s) 245, 414, 967
BtsI GCAGTG 1 cut(s) 870
BtsIMutI CAGTG 3 cut(s) 471, 756, 870
Cac8I GCNNGC 3 cut(s) 11, 462, 854
CaiI CAGNNNCTG 2 cut(s) 497, 719
CciI TCATGA 2 cut(s) 169, 331
CfoI GCGC 3 cut(s) 460, 755, 810
Cfr10I RCCGGY 1 cut(s) 464
Cfr13I GGNCC 3 cut(s) 301, 644, 653
ClaI ATCGAT 1 cut(s) 21
Csp6I GTAC 3 cut(s) 231, 468, 527
CspCI CAANNNNNGTGG 2 cut(s) 658, 693
CviAII CATG 7 cut(s) 81, 170, 211, 275, 332, 675, 709
CviQI GTAC 3 cut(s) 231, 468, 527
DdeI CTNAG 3 cut(s) 498, 507, 957
DinI GGCGCC 1 cut(s) 754
EaeI YGGCCR 1 cut(s) 786
Eco130I CCWWGG 4 cut(s) 297, 392, 708, 774
Eco47I GGWCC 2 cut(s) 301, 653
Eco57I CTGAAG 1 cut(s) 990
Eco81I CCTNAGG 1 cut(s) 957
EcoT14I CCWWGG 4 cut(s) 297, 392, 708, 774
EcoT22I ATGCAT 1 cut(s) 676
EgeI GGCGCC 1 cut(s) 754
EheI GGCGCC 1 cut(s) 754
ErhI CCWWGG 4 cut(s) 297, 392, 708, 774
FaeI CATG 7 cut(s) 84, 173, 214, 278, 335, 678, 712
FaqI GGGAC 1 cut(s) 639
FatI CATG 7 cut(s) 80, 169, 210, 274, 331, 674, 708
FauNDI CATATG 1 cut(s) 322
FbaI TGATCA 4 cut(s) 172, 238, 328, 547
FokI GGATG 3 cut(s) 232, 421, 974
FspBI CTAG 1 cut(s) 699
GlaI GCGC 3 cut(s) 459, 754, 809
GsaI CCCAGC 1 cut(s) 144
GsuI CTGGAG 1 cut(s) 570
HaeII RGCGCY 1 cut(s) 756
HaeIII GGCC 5 cut(s) 271, 391, 645, 788, 1005
HapII CCGG 1 cut(s) 465
HhaI GCGC 3 cut(s) 460, 755, 810
Hin1I GRCGYC 1 cut(s) 753
Hin1II CATG 7 cut(s) 84, 173, 214, 278, 335, 678, 712
Hin6I GCGC 3 cut(s) 458, 753, 808
HinP1I GCGC 3 cut(s) 458, 753, 808
HinfI GANTC 2 cut(s) 119, 681
HpaII CCGG 1 cut(s) 465
HphI GGTGA 1 cut(s) 856
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 3 cut(s) 93, 607, 686
Hpy188III TCNNGA 6 cut(s) 170, 332, 536, 564, 587, 959
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 1 cut(s) 133
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 9 cut(s) 71, 433, 491, 669, 674, 734, 840, 875, 977
HpyF10VI GCNNNNNNNGC 7 cut(s) 503, 648, 719, 725, 728, 731, 974
HpyF3I CTNAG 3 cut(s) 498, 507, 957
HpySE526I ACGT 1 cut(s) 285
Hsp92I GRCGYC 1 cut(s) 753
Hsp92II CATG 7 cut(s) 84, 173, 214, 278, 335, 678, 712
HspAI GCGC 3 cut(s) 458, 753, 808
KasI GGCGCC 1 cut(s) 752
KpnI GGTACC 1 cut(s) 471
Ksp22I TGATCA 4 cut(s) 172, 238, 328, 547
LmnI GCTCC 1 cut(s) 991
Lsp1109I GCAGC 9 cut(s) 55, 83, 481, 503, 706, 712, 715, 718, 961
LweI GCATC 5 cut(s) 254, 420, 541, 827, 884
MaeI CTAG 1 cut(s) 699
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 4 cut(s) 611, 660, 829, 862
MboII GAAGA 5 cut(s) 78, 140, 249, 714, 811
MflI RGATCY 1 cut(s) 451
MhlI GDGCHC 1 cut(s) 296
MlsI TGGCCA 1 cut(s) 788
MluCI AATT 2 cut(s) 515, 897
MluNI TGGCCA 1 cut(s) 788
Mly113I GGCGCC 1 cut(s) 753
MmeI TCCRAC 1 cut(s) 709
Mox20I TGGCCA 1 cut(s) 788
Mph1103I ATGCAT 1 cut(s) 676
MscI TGGCCA 1 cut(s) 788
MseI TTAA 3 cut(s) 311, 900, 1021
Msp20I TGGCCA 1 cut(s) 788
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 1 cut(s) 465
Mva1269I GAATGC 1 cut(s) 508
MvnI CGCG 4 cut(s) 458, 651, 808, 810
MwoI GCNNNNNNNGC 7 cut(s) 503, 648, 719, 725, 728, 731, 974
NarI GGCGCC 1 cut(s) 753
NcoI CCATGG 1 cut(s) 708
NdeI CATATG 1 cut(s) 322
NlaIII CATG 7 cut(s) 84, 173, 214, 278, 335, 678, 712
NlaIV GGNNCC 3 cut(s) 469, 655, 754
NmuCI GTSAC 2 cut(s) 660, 862
NsiI ATGCAT 1 cut(s) 676
NspI RCATGY 2 cut(s) 214, 678
NspV TTCGAA 1 cut(s) 126
PagI TCATGA 2 cut(s) 169, 331
PciI ACATGT 1 cut(s) 210
PctI GAATGC 1 cut(s) 508
PfeI GAWTC 2 cut(s) 119, 681
PluTI GGCGCC 1 cut(s) 756
PscI ACATGT 1 cut(s) 210
PshBI ATTAAT 2 cut(s) 311, 900
PspFI CCCAGC 1 cut(s) 140
PspN4I GGNNCC 3 cut(s) 469, 655, 754
PspPI GGNCC 3 cut(s) 301, 644, 653
PstI CTGCAG 1 cut(s) 73
PstNI CAGNNNCTG 2 cut(s) 497, 719
PsuI RGATCY 1 cut(s) 451
PvuII CAGCTG 1 cut(s) 494
RsaI GTAC 3 cut(s) 232, 469, 528
RsaNI GTAC 3 cut(s) 231, 468, 527
SaqAI TTAA 3 cut(s) 311, 900, 1021
Sau96I GGNCC 3 cut(s) 301, 644, 653
ScaI AGTACT 1 cut(s) 232
SduI GDGCHC 1 cut(s) 296
SfaNI GCATC 5 cut(s) 254, 420, 541, 827, 884
SfcI CTRYAG 1 cut(s) 69
SfoI GGCGCC 1 cut(s) 754
SfuI TTCGAA 1 cut(s) 126
SinI GGWCC 2 cut(s) 301, 653
Sse9I AATT 2 cut(s) 515, 897
SsiI CCGC 5 cut(s) 642, 651, 722, 806, 810
SspDI GGCGCC 1 cut(s) 752
SspI AATATT 1 cut(s) 385
SspMI CTAG 1 cut(s) 699
StyI CCWWGG 4 cut(s) 297, 392, 708, 774
TaiI ACGT 1 cut(s) 288
TaqI TCGA 3 cut(s) 5, 21, 126
TasI AATT 2 cut(s) 515, 897
TatI WGTACW 2 cut(s) 230, 526
TauI GCSGC 2 cut(s) 645, 725
TfiI GAWTC 2 cut(s) 119, 681
Tru1I TTAA 3 cut(s) 311, 900, 1021
Tru9I TTAA 3 cut(s) 311, 900, 1021
TscAI CASTG 3 cut(s) 478, 763, 877
TseFI GTSAC 2 cut(s) 660, 862
TseI GCWGC 9 cut(s) 68, 71, 491, 494, 719, 725, 728, 731, 974
Tsp45I GTSAC 2 cut(s) 660, 862
TspDTI ATGAA 3 cut(s) 66, 348, 756
TspRI CASTG 3 cut(s) 478, 763, 877
VpaK11BI GGWCC 2 cut(s) 301, 653
VspI ATTAAT 2 cut(s) 311, 900
XapI RAATTY 1 cut(s) 515
XceI RCATGY 2 cut(s) 214, 678
XcmI CCANNNNNNNNNTGG 1 cut(s) 781
XspI CTAG 1 cut(s) 699
ZrmI AGTACT 1 cut(s) 232
Zsp2I ATGCAT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.