Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0013621

Physical Location & Seq

Genomic Coordinates Forward (+)

3662545 .. 3663231

Gene Structure 687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAGTCCAAACTCCTCATACATTAACCAGCCCGGACCAGCCAGACACCATCAATGGCGTTTCCGGCGTCAATTCTGTCGCCGCCGTCCGCAACCCCCAAATTTCCGTAACCTATTCAATCAGAAGCCCTGCCGAATTCGAAACAGCTTCCACCCAAGCTGTGTAAAAGCAGTTTCATCCACGGCACAGTTTGGAGAACCCAACAAAGAAAATAAGCAGAAGCTGCAAATCAAAAGCACTTTTGTGAAGGAGAAAGCTGTGGGAAGCCGTACCTGCCCCAGTGAAGGAGCTTCCATGGAAAAAAAGCAGCAGATACAGCGCTGGAGCAGCTGCTTTTGCTTGGGAAAAAAGCATTTATATGGTAATTTGTTACTTTGGGCATCTCTGCTTCCTATCAGACATCATATTTTCCACCTCCAGAAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

16.66

Weight (kDa)

10.86

Isoelectric Point (pI)

72.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013621)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32450
malus_domestica	MD08G1076300.v1.1 MD15G1063400.v1.1
prunus_persica	Prupe.1G417600_v2.0.a1
pyrus_communis	pycom15g06020
rosa_chinensis	RchiOBHm_Chr6g0310221
rosa_laevigata	RLG00000010498
rosa_multiflora	Rmu_sc0001772.1_g000051 Rmu_sc0002348.1_g000028
rosa_roxburghii	Rroxscaffold_7G00158730 Rroxscaffold_7G00158740
rosa_rugosa	Rorug06G0378300
rosa_samantha	Rh6AG492400 Rh6BG502100 Rh6CG507000 Rh6DG137000 Rh6DG493200
rosa_wichuraiana	Rw6G042850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	281
AciI	CCGC	2 cut(s)	82, 89
AcsI	RAATTY	2 cut(s)	100, 135
AcyI	GRCGYC	1 cut(s)	67
AfaI	GTAC	1 cut(s)	271
AfeI	AGCGCT	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	284
AgsI	TTSAA	1 cut(s)	118
AleI	CACNNNNGTG	1 cut(s)	242
AluBI	AGCT	6 cut(s)	147, 159, 223, 257, 290, 330
AluI	AGCT	6 cut(s)	147, 159, 223, 257, 290, 330
AlwNI	CAGNNNCTG	1 cut(s)	223
Aor51HI	AGCGCT	1 cut(s)	320
ApeKI	GCWGC	4 cut(s)	223, 307, 327, 330
ApoI	RAATTY	2 cut(s)	100, 135
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	35
AsuC2I	CCSGG	1 cut(s)	33
AsuII	TTCGAA	1 cut(s)	139
AvaII	GGWCC	1 cut(s)	35
BbvI	GCAGC	4 cut(s)	210, 317, 319, 339
BccI	CCATC	1 cut(s)	57
BceAI	ACGGC	3 cut(s)	69, 198, 252
BcnI	CCSGG	1 cut(s)	33
BfoI	RGCGCY	1 cut(s)	322
BfuAI	ACCTGC	1 cut(s)	281
BisI	GCNGC	5 cut(s)	82, 224, 308, 328, 331
BlsI	GCNGC	5 cut(s)	83, 225, 309, 329, 332
Bme1390I	CCNGG	1 cut(s)	33
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	35
BmrFI	CCNGG	1 cut(s)	33
BmrI	ACTGGG	1 cut(s)	273
BmsI	GCATC	1 cut(s)	389
BmuI	ACTGGG	1 cut(s)	273
BpmI	CTGGAG	2 cut(s)	343, 401
Bpu14I	TTCGAA	1 cut(s)	139
BpuMI	CCSGG	1 cut(s)	33
BsaHI	GRCGYC	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	180, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse1I	ACTGG	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	180, 294
BseGI	GGATG	1 cut(s)	176
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseNI	ACTGG	1 cut(s)	279
BseRI	GAGGAG	1 cut(s)	4
BseXI	GCAGC	4 cut(s)	210, 317, 319, 339
BsiSI	CCGG	2 cut(s)	33, 64
BslI	CCNNNNNNNGG	1 cut(s)	284
Bsp119I	TTCGAA	1 cut(s)	139
Bsp19I	CCATGG	1 cut(s)	294
BspACI	CCGC	2 cut(s)	82, 89
BspMI	ACCTGC	1 cut(s)	281
BspT104I	TTCGAA	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	279
BssECI	CCNNGG	2 cut(s)	180, 294
BssNI	GRCGYC	1 cut(s)	67
BssT1I	CCWWGG	1 cut(s)	294
Bst4CI	ACNGT	1 cut(s)	189
BstACI	GRCGYC	1 cut(s)	67
BstAPI	GCANNNNNTGC	1 cut(s)	223
BstBI	TTCGAA	1 cut(s)	139
BstDSI	CCRYGG	2 cut(s)	180, 294
BstF5I	GGATG	1 cut(s)	176
BstH2I	RGCGCY	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	321
BstMWI	GCNNNNNNNGC	6 cut(s)	64, 223, 273, 316, 327, 336
BstSCI	CCNGG	1 cut(s)	31
BstV1I	GCAGC	4 cut(s)	210, 317, 319, 339
BtgI	CCRYGG	2 cut(s)	180, 294
BtsCI	GGATG	1 cut(s)	176
BtsIMutI	CAGTG	1 cut(s)	286
BveI	ACCTGC	1 cut(s)	281
CaiI	CAGNNNCTG	1 cut(s)	223
CfoI	GCGC	1 cut(s)	321
Cfr13I	GGNCC	1 cut(s)	35
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	270
CviAII	CATG	1 cut(s)	295
CviQI	GTAC	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	35
Eco47III	AGCGCT	1 cut(s)	320
EcoRI	GAATTC	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	1 cut(s)	298
FaiI	YATR	6 cut(s)	19, 296, 358, 360, 405, 427
FatI	CATG	1 cut(s)	294
Fnu4HI	GCNGC	5 cut(s)	82, 224, 308, 328, 331
FokI	GGATG	1 cut(s)	163
Fsp4HI	GCNGC	5 cut(s)	82, 224, 308, 328, 331
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	5 cut(s)	82, 224, 308, 328, 331
GsuI	CTGGAG	2 cut(s)	343, 401
HaeII	RGCGCY	1 cut(s)	322
HapII	CCGG	2 cut(s)	33, 64
HgaI	GACGC	1 cut(s)	56
HhaI	GCGC	1 cut(s)	321
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	1 cut(s)	298
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	2 cut(s)	33, 64
Hpy188I	TCNGA	2 cut(s)	123, 398
Hpy188III	TCNNGA	1 cut(s)	418
HpyAV	CCTTC	2 cut(s)	241, 278
HpyCH4III	ACNGT	1 cut(s)	189
HpyCH4V	TGCA	1 cut(s)	226
HpyF10VI	GCNNNNNNNGC	6 cut(s)	64, 223, 273, 316, 327, 336
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	298
HspAI	GCGC	1 cut(s)	319
LmnI	GCTCC	2 cut(s)	287, 324
LpnPI	CCDG	9 cut(s)	41, 46, 51, 55, 77, 142, 286, 292, 307
Lsp1109I	GCAGC	4 cut(s)	210, 317, 319, 339
LweI	GCATC	1 cut(s)	389
MaeIII	GTNAC	2 cut(s)	107, 369
MluCI	AATT	4 cut(s)	71, 100, 135, 364
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	2 cut(s)	25, 425
MseI	TTAA	1 cut(s)	24
MslI	CAYNNNNRTG	2 cut(s)	242, 357
MspA1I	CMGCKG	1 cut(s)	330
MspI	CCGG	2 cut(s)	33, 64
MspR9I	CCNGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	6 cut(s)	64, 223, 273, 316, 327, 336
NciI	CCSGG	1 cut(s)	33
NcoI	CCATGG	1 cut(s)	294
NlaIII	CATG	1 cut(s)	298
NspV	TTCGAA	1 cut(s)	139
OliI	CACNNNNGTG	1 cut(s)	242
PkrI	GCNGC	5 cut(s)	83, 225, 309, 329, 332
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	35
PstNI	CAGNNNCTG	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	330
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
RseI	CAYNNNNRTG	2 cut(s)	242, 357
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	5 cut(s)	82, 224, 308, 328, 331
Sau96I	GGNCC	1 cut(s)	35
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	33
SetI	ASST	9 cut(s)	114, 149, 161, 225, 259, 275, 292, 332, 417
SfaNI	GCATC	1 cut(s)	389
SfuI	TTCGAA	1 cut(s)	139
SinI	GGWCC	1 cut(s)	35
SmiMI	CAYNNNNRTG	2 cut(s)	242, 357
Sse9I	AATT	4 cut(s)	71, 100, 135, 364
SsiI	CCGC	2 cut(s)	82, 89
StyD4I	CCNGG	1 cut(s)	31
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	189
TaqI	TCGA	1 cut(s)	139
TasI	AATT	4 cut(s)	71, 100, 135, 364
TauI	GCSGC	1 cut(s)	84
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	1 cut(s)	286
TseI	GCWGC	4 cut(s)	223, 307, 327, 330
TspDTI	ATGAA	1 cut(s)	165
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	35
XapI	RAATTY	2 cut(s)	100, 135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.