pycom15g06130

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0008346
Physical Location & Seq
Reverse (-)
3740691 .. 3742758
2068 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1200 bp
ATGGGAGGTCATCACAGTGAGGATGTAGGGTTTCAGCATAGAAATGATGGGAGCCTAAACTGTCCATCGTCCGGGATGAACACGAATCCGCTGCCCGAAAAGGTTTCGAGAATGGCGATGAGTTCTGTGTCCATGTTTAAGCCGTCAAATGGGGCTGACCCTTTCTTTGGTTCTGCTTGGGATCCAATTGTTTCATTGAGCCAGAGTGATAATTTTGGCAGTTCTACGGGTGTTTCCCACGGCGAATTTCCCAATCCACCTTACCCCTTTGCGATGGAGAATCAGGGAATGAGTAGCACCTCCCACCTTGTTCAATATCCATCTGATTCAAGCTATGCTGGGATGGTGCCAAAGCTTCCTCCATGTTTTGGAAGTGGGAGCTTCACAGAAATGGTTGGTTCTTTTGGTGTCTCTGAGTGTGGCCAGATTGCTAACCCTGGGTGTCCTCCGAACTATAACCGGAACAGGGAGGGGGGCACTTTAACAATCGGTGCCCAATCGCACGATGATCGCCAAATTTCTGAAGAGAGTGCTTTAGGATCTTCGCCGAATGGAAAGAGAAGGAAACGAGTTCCCGAATCCAACTCTGCATTCAGTCCAAATAAGAATGTTGATGGGGAACTTAACAAGGATATGTCTGGGGAGAGCTCTGATTATCTGAAAGAACAAGATGAGAAGAAACAGATGGGCAGACAGGCTAAAGAAAATTCTCAAAGCGGAGATCCAAAAGACAGTTACATTCATGTAAGAAGAGAAAAGATTAGCGAGCGGATGAGATTGCTTCAAGAACTTGTTCCAGGATGCAATAAGATTACTGGGAAGGCTGTAATGCTTGATGAGATCATCAATTATGTGCAGTCTCTGCAACAGCAAGTTGAGTTTTTATCAATGAAACTTGCGACGGTGAATCCAGAACTCAACATTGATATTGAACGGATTCTATCCAAAGACATTCTTAATTCACGGAGTGGCGGTGGAGCTAACTTCGGGTTTAGTCCTGGAATCGGCTCTCCTCACCCGTACCCTCCCGGTATGTTCCATGGAAACTTGCCAAGTTTGCTAACTTCAGCTCCACAATTTCCTTCCTTGCCTCAGAATGTATTAGACAATGAGCTCCAGGGTCTTTTCCATATGGGTTTTGATTCTAGTTCAGCTATTGACAATATGGGACAAAATGGCCGCTTGAAACCAGAGCTATAA

Protein Analysis

400

Amino Acids

43.23

Weight (kDa)

5.51

Isoelectric Point (pI)

60.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH_SAC51 PF23173 249 - 292 2.4e-06 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 346, 491
AccB7I CCANNNNNTGG 1 cut(s) 368
AccBSI CCGCTC 1 cut(s) 769
AciI CCGC 5 cut(s) 89, 717, 769, 972, 1180
AclWI GGATC 4 cut(s) 176, 189, 547, 716
AcoI YGGCCR 2 cut(s) 421, 1177
AcsI RAATTY 3 cut(s) 245, 516, 706
AcuI CTGAAG 2 cut(s) 543, 1050
AdeI CACNNNGTG 1 cut(s) 968
AfaI GTAC 1 cut(s) 1022
AfiI CCNNNNNNNGG 6 cut(s) 71, 149, 167, 368, 466, 1004
AgsI TTSAA 5 cut(s) 314, 330, 785, 932, 1186
AjnI CCWGG 4 cut(s) 436, 796, 997, 1116
AjuI GAANNNNNNNTTGG 2 cut(s) 575, 607
AluBI AGCT 9 cut(s) 333, 355, 381, 648, 980, 1070, 1114, 1154, 1195
AluI AGCT 9 cut(s) 333, 355, 381, 648, 980, 1070, 1114, 1154, 1195
Alw21I GWGCWC 2 cut(s) 650, 1116
Alw26I GTCTC 2 cut(s) 415, 864
AlwI GGATC 4 cut(s) 176, 189, 547, 716
AlwNI CAGNNNCTG 1 cut(s) 862
AoxI GGCC 2 cut(s) 421, 1177
ApeKI GCWGC 1 cut(s) 91
ApoI RAATTY 3 cut(s) 245, 516, 706
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
Asp700I GAANNNNTTC 2 cut(s) 792, 936
AsuC2I CCSGG 2 cut(s) 73, 1029
AsuHPI GGTGA 2 cut(s) 916, 1007
BaeGI GKGCMC 2 cut(s) 479, 496
BalI TGGCCA 1 cut(s) 423
BamHI GGATCC 1 cut(s) 181
BanI GGYRCC 2 cut(s) 346, 491
BanII GRGCYC 2 cut(s) 650, 1116
Bbv12I GWGCWC 2 cut(s) 650, 1116
BbvI GCAGC 1 cut(s) 78
BccI CCATC 7 cut(s) 41, 73, 268, 328, 337, 608, 679
BceAI ACGGC 2 cut(s) 127, 256
BcgI CGANNNNNNTGC 4 cut(s) 73, 107, 491, 525
BciT130I CCWGG 4 cut(s) 438, 798, 999, 1118
BcnI CCSGG 2 cut(s) 73, 1029
BcoDI GTCTC 2 cut(s) 415, 864
BfaI CTAG 1 cut(s) 1146
BisI GCNGC 2 cut(s) 92, 1180
BlsI GCNGC 2 cut(s) 93, 1181
Bme1390I CCNGG 6 cut(s) 73, 438, 798, 999, 1029, 1118
BmiI GGNNCC 4 cut(s) 53, 183, 348, 493
BmrFI CCNGG 6 cut(s) 73, 438, 798, 999, 1029, 1118
BmrI ACTGGG 1 cut(s) 825
BmsI GCATC 1 cut(s) 791
BmuI ACTGGG 1 cut(s) 825
BpmI CTGGAG 1 cut(s) 1100
BpuMI CCSGG 2 cut(s) 73, 1029
BsaJI CCNNGG 5 cut(s) 238, 436, 437, 1039, 1117
BsaWI WCCGGW 1 cut(s) 459
BsaXI ACNNNNNCTCC 4 cut(s) 958, 988, 1054, 1084
Bsc4I CCNNNNNNNGG 6 cut(s) 71, 149, 167, 368, 466, 1004
Bse1I ACTGG 1 cut(s) 820
BseBI CCWGG 4 cut(s) 438, 798, 999, 1118
BseDI CCNNGG 5 cut(s) 238, 436, 437, 1039, 1117
BseGI GGATG 5 cut(s) 28, 81, 348, 777, 806
BseLI CCNNNNNNNGG 6 cut(s) 71, 149, 167, 368, 466, 1004
BseMII CTCAG 2 cut(s) 405, 1106
BseNI ACTGG 1 cut(s) 820
BseRI GAGGAG 1 cut(s) 1002
BseSI GKGCMC 2 cut(s) 479, 496
BseXI GCAGC 1 cut(s) 78
BseYI CCCAGC 1 cut(s) 338
BsgI GTGCAG 1 cut(s) 875
BshFI GGCC 2 cut(s) 423, 1179
BshNI GGYRCC 2 cut(s) 346, 491
BsiHKAI GWGCWC 2 cut(s) 650, 1116
BsiSI CCGG 3 cut(s) 72, 460, 1029
BslFI GGGAC 1 cut(s) 1182
BslI CCNNNNNNNGG 6 cut(s) 71, 149, 167, 368, 466, 1004
BsmAI GTCTC 2 cut(s) 415, 864
BsmFI GGGAC 1 cut(s) 1182
BsmI GAATGC 1 cut(s) 590
BsnI GGCC 2 cut(s) 423, 1179
Bsp1286I GDGCHC 4 cut(s) 479, 496, 650, 1116
Bsp143I GATC 5 cut(s) 181, 508, 539, 721, 840
Bsp19I CCATGG 1 cut(s) 1039
BspACI CCGC 5 cut(s) 89, 717, 769, 972, 1180
BspANI GGCC 2 cut(s) 423, 1179
BspCNI CTCAG 2 cut(s) 406, 1105
BspLI GGNNCC 4 cut(s) 53, 183, 348, 493
BspPI GGATC 4 cut(s) 176, 189, 547, 716
BspT107I GGYRCC 2 cut(s) 346, 491
BsrBI CCGCTC 1 cut(s) 769
BsrI ACTGG 1 cut(s) 820
BssECI CCNNGG 5 cut(s) 238, 436, 437, 1039, 1117
BssMI GATC 5 cut(s) 181, 508, 539, 721, 840
BssT1I CCWWGG 1 cut(s) 1039
Bst2UI CCWGG 4 cut(s) 438, 798, 999, 1118
Bst4CI ACNGT 4 cut(s) 17, 62, 734, 904
Bst6I CTCTTC 2 cut(s) 519, 745
BstAPI GCANNNNNTGC 1 cut(s) 862
BstC8I GCNNGC 1 cut(s) 767
BstDEI CTNAG 2 cut(s) 414, 1092
BstDSI CCRYGG 2 cut(s) 238, 1039
BstF5I GGATG 5 cut(s) 28, 81, 348, 777, 806
BstKTI GATC 5 cut(s) 184, 511, 542, 724, 843
BstMAI GTCTC 2 cut(s) 415, 864
BstMBI GATC 5 cut(s) 181, 508, 539, 721, 840
BstMWI GCNNNNNNNGC 2 cut(s) 862, 1057
BstNI CCWGG 4 cut(s) 438, 798, 999, 1118
BstSCI CCNGG 6 cut(s) 71, 436, 796, 997, 1027, 1116
BstSLI GKGCMC 2 cut(s) 479, 496
BstV1I GCAGC 1 cut(s) 78
BstX2I RGATCY 3 cut(s) 181, 539, 721
BstYI RGATCY 3 cut(s) 181, 539, 721
BsuRI GGCC 2 cut(s) 423, 1179
BtgI CCRYGG 2 cut(s) 238, 1039
BtgZI GCGATG 2 cut(s) 131, 287
BtsCI GGATG 5 cut(s) 28, 81, 348, 777, 806
BtsIMutI CAGTG 1 cut(s) 22
Cac8I GCNNGC 1 cut(s) 767
CaiI CAGNNNCTG 1 cut(s) 862
Csp6I GTAC 1 cut(s) 1021
CviAII CATG 4 cut(s) 133, 363, 743, 1040
CviQI GTAC 1 cut(s) 1021
DdeI CTNAG 2 cut(s) 414, 1092
DpnI GATC 5 cut(s) 183, 510, 541, 723, 842
DpnII GATC 5 cut(s) 181, 508, 539, 721, 840
DraIII CACNNNGTG 1 cut(s) 968
EaeI YGGCCR 2 cut(s) 421, 1177
Eam1104I CTCTTC 2 cut(s) 519, 745
EarI CTCTTC 2 cut(s) 519, 745
Ecl136II GAGCTC 2 cut(s) 648, 1114
Eco130I CCWWGG 1 cut(s) 1039
Eco24I GRGCYC 2 cut(s) 650, 1116
Eco53kI GAGCTC 2 cut(s) 648, 1114
Eco57I CTGAAG 2 cut(s) 543, 1050
EcoICRI GAGCTC 2 cut(s) 648, 1114
EcoRII CCWGG 4 cut(s) 436, 796, 997, 1116
EcoT14I CCWWGG 1 cut(s) 1039
EcoT38I GRGCYC 2 cut(s) 650, 1116
ErhI CCWWGG 1 cut(s) 1039
FaeI CATG 4 cut(s) 136, 366, 746, 1043
FalI AAGNNNNNCTT 2 cut(s) 939, 971
FaqI GGGAC 1 cut(s) 1182
FatI CATG 4 cut(s) 132, 362, 742, 1039
FauNDI CATATG 1 cut(s) 1131
Fnu4HI GCNGC 2 cut(s) 92, 1180
FokI GGATG 5 cut(s) 35, 88, 355, 784, 813
FriOI GRGCYC 2 cut(s) 650, 1116
Fsp4HI GCNGC 2 cut(s) 92, 1180
FspBI CTAG 1 cut(s) 1146
GluI GCNGC 2 cut(s) 92, 1180
GsaI CCCAGC 1 cut(s) 342
GsuI CTGGAG 1 cut(s) 1100
HaeIII GGCC 2 cut(s) 423, 1179
HapII CCGG 3 cut(s) 72, 460, 1029
Hin1II CATG 4 cut(s) 136, 366, 746, 1043
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 8 cut(s) 85, 280, 326, 578, 907, 937, 1002, 1142
HpaII CCGG 3 cut(s) 72, 460, 1029
HphI GGTGA 2 cut(s) 916, 1007
Hpy188I TCNGA 7 cut(s) 325, 415, 450, 523, 652, 660, 1095
Hpy188III TCNNGA 4 cut(s) 108, 575, 785, 911
Hpy99I CGWCG 1 cut(s) 904
HpyAV CCTTC 3 cut(s) 555, 814, 1092
HpyCH4III ACNGT 4 cut(s) 17, 62, 734, 904
HpyCH4V TGCA 4 cut(s) 590, 804, 856, 865
HpyF10VI GCNNNNNNNGC 2 cut(s) 862, 1057
HpyF3I CTNAG 2 cut(s) 414, 1092
Hsp92II CATG 4 cut(s) 136, 366, 746, 1043
Kzo9I GATC 5 cut(s) 181, 508, 539, 721, 840
LmnI GCTCC 5 cut(s) 51, 378, 977, 1075, 1119
Lsp1109I GCAGC 1 cut(s) 78
LweI GCATC 1 cut(s) 791
MaeI CTAG 1 cut(s) 1146
MaeIII GTNAC 1 cut(s) 734
MalI GATC 5 cut(s) 183, 510, 541, 723, 842
MbiI CCGCTC 1 cut(s) 769
MboI GATC 5 cut(s) 181, 508, 539, 721, 840
MboII GAAGA 4 cut(s) 534, 536, 688, 762
MfeI CAATTG 1 cut(s) 186
MflI RGATCY 3 cut(s) 181, 539, 721
MhlI GDGCHC 4 cut(s) 479, 496, 650, 1116
MlsI TGGCCA 1 cut(s) 423
MluCI AATT 8 cut(s) 186, 211, 245, 516, 706, 847, 958, 1076
MluNI TGGCCA 1 cut(s) 423
MmeI TCCRAC 1 cut(s) 606
MnlI CCTC 8 cut(s) 13, 310, 369, 456, 463, 1023, 1035, 1101
Mox20I TGGCCA 1 cut(s) 423
MroXI GAANNNNTTC 2 cut(s) 792, 936
MscI TGGCCA 1 cut(s) 423
MseI TTAA 4 cut(s) 138, 482, 624, 957
MslI CAYNNNNRTG 3 cut(s) 15, 42, 389
Msp20I TGGCCA 1 cut(s) 423
MspA1I CMGCKG 1 cut(s) 91
MspI CCGG 3 cut(s) 72, 460, 1029
MspR9I CCNGG 6 cut(s) 73, 438, 798, 999, 1029, 1118
MunI CAATTG 1 cut(s) 186
Mva1269I GAATGC 1 cut(s) 590
MvaI CCWGG 4 cut(s) 438, 798, 999, 1118
MwoI GCNNNNNNNGC 2 cut(s) 862, 1057
NciI CCSGG 2 cut(s) 73, 1029
NcoI CCATGG 1 cut(s) 1039
NdeI CATATG 1 cut(s) 1131
NdeII GATC 5 cut(s) 181, 508, 539, 721, 840
NlaIII CATG 4 cut(s) 136, 366, 746, 1043
NlaIV GGNNCC 4 cut(s) 53, 183, 348, 493
PasI CCCWGGG 1 cut(s) 437
PcsI WCGNNNNNNNCGW 1 cut(s) 113
PctI GAATGC 1 cut(s) 590
PdmI GAANNNNTTC 2 cut(s) 792, 936
PfeI GAWTC 8 cut(s) 85, 280, 326, 578, 907, 937, 1002, 1142
PflMI CCANNNNNTGG 1 cut(s) 368
PfoI TCCNGGA 3 cut(s) 71, 796, 997
PkrI GCNGC 2 cut(s) 93, 1181
Psp124BI GAGCTC 2 cut(s) 650, 1116
Psp6I CCWGG 4 cut(s) 436, 796, 997, 1116
PspFI CCCAGC 1 cut(s) 338
PspGI CCWGG 4 cut(s) 436, 796, 997, 1116
PspN4I GGNNCC 4 cut(s) 53, 183, 348, 493
PstNI CAGNNNCTG 1 cut(s) 862
PsuI RGATCY 3 cut(s) 181, 539, 721
RsaI GTAC 1 cut(s) 1022
RsaNI GTAC 1 cut(s) 1021
RseI CAYNNNNRTG 3 cut(s) 15, 42, 389
SacI GAGCTC 2 cut(s) 650, 1116
SaqAI TTAA 4 cut(s) 138, 482, 624, 957
SatI GCNGC 2 cut(s) 92, 1180
Sau3AI GATC 5 cut(s) 181, 508, 539, 721, 840
ScrFI CCNGG 6 cut(s) 73, 438, 798, 999, 1029, 1118
SduI GDGCHC 4 cut(s) 479, 496, 650, 1116
SfaNI GCATC 1 cut(s) 791
SmiMI CAYNNNNRTG 3 cut(s) 15, 42, 389
Sse9I AATT 8 cut(s) 186, 211, 245, 516, 706, 847, 958, 1076
SsiI CCGC 5 cut(s) 89, 717, 769, 972, 1180
SspMI CTAG 1 cut(s) 1146
SstI GAGCTC 2 cut(s) 650, 1116
StyD4I CCNGG 6 cut(s) 71, 436, 796, 997, 1027, 1116
StyI CCWWGG 1 cut(s) 1039
TaaI ACNGT 4 cut(s) 17, 62, 734, 904
TaqI TCGA 1 cut(s) 107
TasI AATT 8 cut(s) 186, 211, 245, 516, 706, 847, 958, 1076
TauI GCSGC 1 cut(s) 1182
TfiI GAWTC 8 cut(s) 85, 280, 326, 578, 907, 937, 1002, 1142
Tru1I TTAA 4 cut(s) 138, 482, 624, 957
Tru9I TTAA 4 cut(s) 138, 482, 624, 957
TscAI CASTG 1 cut(s) 22
TseI GCWGC 1 cut(s) 91
TspDTI ATGAA 4 cut(s) 92, 183, 731, 905
TspGWI ACGGA 2 cut(s) 949, 979
TspRI CASTG 1 cut(s) 22
Van91I CCANNNNNTGG 1 cut(s) 368
XapI RAATTY 3 cut(s) 245, 516, 706
XmnI GAANNNNTTC 2 cut(s) 792, 936
XspI CTAG 1 cut(s) 1146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.