Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012580

Physical Location & Seq

Genomic Coordinates Reverse (-)

4098742 .. 4100149

Gene Structure 1408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGCGGCAAACAGATAGAAAGATTATAAAGAGAAAAAGAGACGAAAACGGTGATCCTTTATCGCCGGACCTTTCTTGCCGAGAAAGTGACAGCTTTTTCTTCAACGGAGATTGTGGAGAAGACAAACTAATCCCCAATCCCAACAACTATTGTGACGGCTTTGCACTGGAAGAAGACCACTTGCAGAACTTAATTCTCAGAGAGATCGAATTTGGGTACGAGAAAGACGAAGATTTGGTGATTCCCATTTGGGTTTTGAACGCTCGATTGGAATCCATCACATGGGTTCTCCAAAGAAGAAGGGCTCTTGGATTTCATCCCAGAACAGCATATTTGTGCATGACATACTTTGATCGGTTCATTTCCCTGAGACAAATCCCCGTTAGTAATAAAGAAGCTGTGGTTAGATTACTTTCAGTGGCGTGTCTATCTCTGGCTGCAAAGATGGAGGAGCAGAACATTCCATCACTGTCACAGTACGAAGTCGAAAATCCTCACCTTTTTGAAGTAAAACTGATTCAGAGAATGGAGCTTACGGTGTTGGGAGCACTAGAATGGAAGATGAATATGATTACACCCTTCTCGTTTATCGATTACTTCGTCTCCAAGTTGTGCCAAGAATCTCTATCTGATGTAAAATCCAAGATTGCAGGCCTCCTCCTTTCCATAATCACAGAGATCAATTCAATGCATCAACGACCGTCCGCTGTAGCAGCCGCGGCCACTTTGATGGCATTGGATCAGAAACTAACAAAAGAAGCATTGGAATTAAAGATAAACTCTGTATCAGAATTGAAATTTTTGGAAATTGAAGCTGTGATTTTCTGCTACAATCGAATGCAGGAAAAGGAGCTGAAGAGTCTGAAGGACCGATTGATCCCAGTAAATGTTGCAGATAATTCTTCAGTTCCAGCAGAGAAGTCTGTAAAAACCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

313

Amino Acids

35.76

Weight (kDa)

5.48

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	87 - 189	2.8e-21	Cyclin, N-terminal domain
Cyclin_C	PF02984	191 - 265	6.4e-06	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012580)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33190
malus_domestica	MD08G1085300.v1.1 MD08G1085700.v1.1 MD15G1070900.v1.1
prunus_persica	Prupe.1G423600_v2.0.a1
pyrus_communis	pycom08g07030 pycom15g06670
rosa_chinensis	RchiOBHm_Chr6g0309481
rosa_laevigata	RLG00000010562
rosa_multiflora	Rmu_sc0001212.1_g000003 Rmu_sc0007283.1_g000002 Rmu_sc0022500.1_g000003
rosa_roxburghii	Rroxscaffold_7G00159370
rosa_rugosa	Rorug06G0372300
rosa_samantha	Rh6AG485500 Rh6BG494900 Rh6CG499900 Rh6DG485900
rosa_wichuraiana	Rw6G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	26
AccB7I	CCANNNNNTGG	1 cut(s)	282
AccII	CGCG	1 cut(s)	719
AciI	CCGC	4 cut(s)	4, 705, 717, 719
AclWI	GGATC	3 cut(s)	47, 747, 871
AcoI	YGGCCR	1 cut(s)	720
AcsI	RAATTY	2 cut(s)	209, 797
AcuI	CTGAAG	3 cut(s)	875, 884, 888
AfaI	GTAC	2 cut(s)	218, 479
AfiI	CCNNNNNNNGG	1 cut(s)	282
AgsI	TTSAA	6 cut(s)	103, 259, 506, 687, 796, 812
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	5 cut(s)	93, 398, 532, 815, 853
AluI	AGCT	5 cut(s)	93, 398, 532, 815, 853
Alw21I	GWGCWC	1 cut(s)	550
Alw26I	GTCTC	3 cut(s)	33, 364, 607
AlwI	GGATC	3 cut(s)	47, 747, 871
AoxI	GGCC	2 cut(s)	652, 720
ApeKI	GCWGC	2 cut(s)	437, 713
ApoI	RAATTY	2 cut(s)	209, 797
AspS9I	GGNCC	2 cut(s)	67, 868
AsuHPI	GGTGA	3 cut(s)	62, 250, 488
AvaII	GGWCC	2 cut(s)	67, 868
BanII	GRGCYC	1 cut(s)	307
BbsI	GAAGAC	2 cut(s)	126, 180
Bbv12I	GWGCWC	1 cut(s)	550
BbvI	GCAGC	2 cut(s)	424, 725
BccI	CCATC	4 cut(s)	284, 439, 472, 724
BceAI	ACGGC	1 cut(s)	172
BcoDI	GTCTC	3 cut(s)	33, 364, 607
BfaI	CTAG	1 cut(s)	551
BfmI	CTRYAG	1 cut(s)	708
BisI	GCNGC	5 cut(s)	5, 438, 714, 717, 720
BlsI	GCNGC	5 cut(s)	6, 439, 715, 718, 721
Bme18I	GGWCC	2 cut(s)	67, 868
BmgT120I	GGNCC	2 cut(s)	67, 868
BmrI	ACTGGG	1 cut(s)	875
BmsI	GCATC	1 cut(s)	700
BmuI	ACTGGG	1 cut(s)	875
BpiI	GAAGAC	2 cut(s)	126, 180
Bsa29I	ATCGAT	1 cut(s)	591
BsaBI	GATNNNNATC	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	717
BsaXI	ACNNNNNCTCC	2 cut(s)	587, 617
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse1I	ACTGG	2 cut(s)	171, 881
Bse8I	GATNNNNATC	1 cut(s)	271
BseCI	ATCGAT	1 cut(s)	591
BseDI	CCNNGG	1 cut(s)	717
BseGI	GGATG	1 cut(s)	316
BseJI	GATNNNNATC	1 cut(s)	271
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMII	CTCAG	2 cut(s)	211, 359
BseNI	ACTGG	2 cut(s)	171, 881
BseRI	GAGGAG	2 cut(s)	464, 647
BseXI	GCAGC	2 cut(s)	424, 725
Bsh1236I	CGCG	1 cut(s)	719
Bsh1285I	CGRYCG	1 cut(s)	701
BshFI	GGCC	2 cut(s)	654, 722
BshVI	ATCGAT	1 cut(s)	591
BsiEI	CGRYCG	1 cut(s)	701
BsiHKAI	GWGCWC	1 cut(s)	550
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	3 cut(s)	33, 364, 607
BsmBI	CGTCTC	2 cut(s)	33, 607
BsmI	GAATGC	1 cut(s)	843
BsnI	GGCC	2 cut(s)	654, 722
Bsp1286I	GDGCHC	2 cut(s)	307, 550
Bsp143I	GATC	6 cut(s)	52, 204, 352, 678, 739, 876
BspACI	CCGC	4 cut(s)	4, 705, 717, 719
BspANI	GGCC	2 cut(s)	654, 722
BspCNI	CTCAG	2 cut(s)	210, 360
BspDI	ATCGAT	1 cut(s)	591
BspFNI	CGCG	1 cut(s)	719
BspPI	GGATC	3 cut(s)	47, 747, 871
BsrI	ACTGG	2 cut(s)	171, 881
BssECI	CCNNGG	1 cut(s)	717
BssMI	GATC	6 cut(s)	52, 204, 352, 678, 739, 876
Bst4CI	ACNGT	5 cut(s)	50, 471, 477, 538, 702
Bst6I	CTCTTC	1 cut(s)	851
BstC8I	GCNNGC	1 cut(s)	652
BstDEI	CTNAG	2 cut(s)	197, 368
BstDSI	CCRYGG	1 cut(s)	717
BstF5I	GGATG	1 cut(s)	316
BstFNI	CGCG	1 cut(s)	719
BstKTI	GATC	6 cut(s)	55, 207, 355, 681, 742, 879
BstMAI	GTCTC	3 cut(s)	33, 364, 607
BstMBI	GATC	6 cut(s)	52, 204, 352, 678, 739, 876
BstMCI	CGRYCG	1 cut(s)	701
BstMWI	GCNNNNNNNGC	2 cut(s)	713, 719
BstSFI	CTRYAG	1 cut(s)	708
BstUI	CGCG	1 cut(s)	719
BstV1I	GCAGC	2 cut(s)	424, 725
BstV2I	GAAGAC	2 cut(s)	126, 180
BstXI	CCANNNNNNTGG	1 cut(s)	730
Bsu15I	ATCGAT	1 cut(s)	591
BsuRI	GGCC	2 cut(s)	654, 722
BsuTUI	ATCGAT	1 cut(s)	591
BtgI	CCRYGG	1 cut(s)	717
BtsCI	GGATG	1 cut(s)	316
BtsIMutI	CAGTG	3 cut(s)	164, 423, 467
Cac8I	GCNNGC	1 cut(s)	652
Cfr13I	GGNCC	2 cut(s)	67, 868
Cfr42I	CCGCGG	1 cut(s)	720
ClaI	ATCGAT	1 cut(s)	591
Csp6I	GTAC	2 cut(s)	217, 478
CviAII	CATG	2 cut(s)	282, 340
CviQI	GTAC	2 cut(s)	217, 478
DdeI	CTNAG	2 cut(s)	197, 368
DpnI	GATC	6 cut(s)	54, 206, 354, 680, 741, 878
DpnII	GATC	6 cut(s)	52, 204, 352, 678, 739, 876
EaeI	YGGCCR	1 cut(s)	720
Eam1104I	CTCTTC	1 cut(s)	851
EarI	CTCTTC	1 cut(s)	851
Eco147I	AGGCCT	1 cut(s)	654
Eco24I	GRGCYC	1 cut(s)	307
Eco47I	GGWCC	2 cut(s)	67, 868
Eco57I	CTGAAG	3 cut(s)	875, 884, 888
EcoT22I	ATGCAT	1 cut(s)	693
EcoT38I	GRGCYC	1 cut(s)	307
Esp3I	CGTCTC	2 cut(s)	33, 607
FaeI	CATG	2 cut(s)	285, 343
FaiI	YATR	7 cut(s)	26, 283, 331, 341, 346, 569, 668
FatI	CATG	2 cut(s)	281, 339
Fnu4HI	GCNGC	5 cut(s)	5, 438, 714, 717, 720
FokI	GGATG	1 cut(s)	303
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	5 cut(s)	5, 438, 714, 717, 720
FspBI	CTAG	1 cut(s)	551
GluI	GCNGC	5 cut(s)	5, 438, 714, 717, 720
HaeIII	GGCC	2 cut(s)	654, 722
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	2 cut(s)	285, 343
HinfI	GANTC	5 cut(s)	241, 272, 517, 620, 859
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	3 cut(s)	62, 250, 488
Hpy188I	TCNGA	6 cut(s)	200, 522, 631, 744, 790, 864
HpyAV	CCTTC	3 cut(s)	294, 589, 859
HpyCH4III	ACNGT	5 cut(s)	50, 471, 477, 538, 702
HpyCH4V	TGCA	8 cut(s)	164, 184, 339, 440, 650, 691, 841, 893
HpyF10VI	GCNNNNNNNGC	2 cut(s)	713, 719
HpyF3I	CTNAG	2 cut(s)	197, 368
Hsp92II	CATG	2 cut(s)	285, 343
KspI	CCGCGG	1 cut(s)	720
Kzo9I	GATC	6 cut(s)	52, 204, 352, 678, 739, 876
LmnI	GCTCC	4 cut(s)	451, 529, 545, 850
LpnPI	CCDG	9 cut(s)	78, 152, 334, 380, 419, 636, 827, 894, 924
Lsp1109I	GCAGC	2 cut(s)	424, 725
LweI	GCATC	1 cut(s)	700
MaeI	CTAG	1 cut(s)	551
MaeIII	GTNAC	3 cut(s)	86, 152, 471
MalI	GATC	6 cut(s)	54, 206, 354, 680, 741, 878
MboI	GATC	6 cut(s)	52, 204, 352, 678, 739, 876
MboII	GAAGA	9 cut(s)	91, 131, 182, 185, 242, 309, 571, 868, 894
MhlI	GDGCHC	2 cut(s)	307, 550
MluCI	AATT	8 cut(s)	192, 209, 682, 767, 791, 797, 807, 898
MlyI	GAGTC	1 cut(s)	868
MnlI	CCTC	4 cut(s)	442, 504, 665, 668
Mph1103I	ATGCAT	1 cut(s)	693
MseI	TTAA	2 cut(s)	191, 770
MslI	CAYNNNNRTG	3 cut(s)	334, 553, 728
MspA1I	CMGCKG	2 cut(s)	707, 719
MspI	CCGG	1 cut(s)	65
Mva1269I	GAATGC	1 cut(s)	843
MvnI	CGCG	1 cut(s)	719
MwoI	GCNNNNNNNGC	2 cut(s)	713, 719
NdeII	GATC	6 cut(s)	52, 204, 352, 678, 739, 876
NlaIII	CATG	2 cut(s)	285, 343
NmeAIII	GCCGAG	1 cut(s)	104
NmuCI	GTSAC	3 cut(s)	86, 152, 471
NsiI	ATGCAT	1 cut(s)	693
PceI	AGGCCT	1 cut(s)	654
PcsI	WCGNNNNNNNCGW	2 cut(s)	225, 597
PctI	GAATGC	1 cut(s)	843
PfeI	GAWTC	4 cut(s)	241, 272, 517, 620
PflMI	CCANNNNNTGG	1 cut(s)	282
PkrI	GCNGC	5 cut(s)	6, 439, 715, 718, 721
PleI	GAGTC	1 cut(s)	867
PpsI	GAGTC	1 cut(s)	867
PsiI	TTATAA	1 cut(s)	26
PspPI	GGNCC	2 cut(s)	67, 868
RsaI	GTAC	2 cut(s)	218, 479
RsaNI	GTAC	2 cut(s)	217, 478
RseI	CAYNNNNRTG	3 cut(s)	334, 553, 728
SacII	CCGCGG	1 cut(s)	720
SaqAI	TTAA	2 cut(s)	191, 770
SatI	GCNGC	5 cut(s)	5, 438, 714, 717, 720
Sau3AI	GATC	6 cut(s)	52, 204, 352, 678, 739, 876
Sau96I	GGNCC	2 cut(s)	67, 868
SchI	GAGTC	1 cut(s)	868
SduI	GDGCHC	2 cut(s)	307, 550
SetI	ASST	7 cut(s)	72, 95, 400, 501, 534, 817, 855
SfaNI	GCATC	1 cut(s)	700
SfcI	CTRYAG	1 cut(s)	708
Sfr303I	CCGCGG	1 cut(s)	720
SgrBI	CCGCGG	1 cut(s)	720
SinI	GGWCC	2 cut(s)	67, 868
SmiMI	CAYNNNNRTG	3 cut(s)	334, 553, 728
Sse9I	AATT	8 cut(s)	192, 209, 682, 767, 791, 797, 807, 898
SseBI	AGGCCT	1 cut(s)	654
SsiI	CCGC	4 cut(s)	4, 705, 717, 719
SspMI	CTAG	1 cut(s)	551
StuI	AGGCCT	1 cut(s)	654
TaaI	ACNGT	5 cut(s)	50, 471, 477, 538, 702
TaqI	TCGA	5 cut(s)	207, 265, 486, 591, 835
TaqII	GACCGA	1 cut(s)	885
TasI	AATT	8 cut(s)	192, 209, 682, 767, 791, 797, 807, 898
TauI	GCSGC	3 cut(s)	7, 719, 722
TfiI	GAWTC	4 cut(s)	241, 272, 517, 620
Tru1I	TTAA	2 cut(s)	191, 770
Tru9I	TTAA	2 cut(s)	191, 770
TscAI	CASTG	3 cut(s)	171, 423, 474
TseFI	GTSAC	3 cut(s)	86, 152, 471
TseI	GCWGC	2 cut(s)	437, 713
Tsp45I	GTSAC	3 cut(s)	86, 152, 471
TspDTI	ATGAA	3 cut(s)	305, 349, 578
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	3 cut(s)	171, 423, 474
Van91I	CCANNNNNTGG	1 cut(s)	282
VpaK11BI	GGWCC	2 cut(s)	67, 868
XapI	RAATTY	2 cut(s)	209, 797
XspI	CTAG	1 cut(s)	551
Zsp2I	ATGCAT	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.