pycom15g09190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015876
Physical Location & Seq
Reverse (-)
5921138 .. 5922163
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 756 bp
ATGACCACAAACAGCCGAGAAGCCCGACGGAGGAAGATCATGGAGCGAGGGTCCGACCGCCTTGCCCTAATCACGGGTCGGATCCAAACCCTACCCCCCTCCTCCTCTTTTTCTTCTTCACCACCGCCAGACCCAGCAACTCACAGTGAAGATACAGACCTGCCATCCCGGCCGTCGATTTCCCCGGATCAGATTCCCAAAACCCACGTCCCAGATCAAATCCCAGATTTCACTCCTGAGATTGAGGAAAGACGGTCATCATCGTCAACGGTTCAGGATGAATCACCACCATCAACTGTTCAGAATGAGTCACGACCATCATCATTGTCGTTTGAGAAGCCTAGACTTTTCACTGCGAGTAGAATTAGTGGCGCCATTGAAGCATCAGAAAGGATCCGAATTTACATTTCCATCGCGGTTGCGGTACTGGTGGTTTTTTCCCATCTGGGTTTTCCTTTACTGGGTAGTAAATTGGTGAAAACCCTTTTGGGTTTTAGGCCTCTGTACCTGGTTTTGGTGACCAATGTGACACTTGTGCTTGCTCGAATTTTGGACAGCGGTCGACAAAGACACCACAGAGTGCCTGCTGGAATTGGTGAGGGTCAAACTATGAGTGGTAGTGAGTATGAGTGGGCCGAGCGGTTAGGGAAGGCTTTAGGGATAGGCTTGTTGGGAAAGAAGGTACTTGATGCTCTGTTTATGGACTGTGCTGTGTATGCAATAATTGTTGTTTGTGGCCTCTCTTTTGCTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

252

Amino Acids

27.43

Weight (kDa)

8.97

Isoelectric Point (pI)

53.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015876)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32680
fragaria_vesca FvH4_2g36330
malus_domestica MD15G1099900.v1.1
prunus_persica Prupe.1G454700_v2.0.a1
pyrus_communis pycom08g10100 pycom15g09190
rosa_chinensis RchiOBHm_Chr6g0305551
rosa_multiflora Rmu_sc0000841.1_g000003 Rmu_sc0001153.1_g000006
rosa_roxburghii Rroxscaffold_7G00162580
rosa_rugosa Rorug06G0341600
rosa_samantha Rh6AG453600 Rh6BG448000 Rh6CG467400
rosa_wichuraiana Rw6G039530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 168
AccB1I GGYRCC 1 cut(s) 371
AccBSI CCGCTC 1 cut(s) 640
AccI GTMKAC 1 cut(s) 562
AccII CGCG 1 cut(s) 416
AciI CCGC 6 cut(s) 58, 125, 416, 422, 558, 640
AclWI GGATC 5 cut(s) 76, 89, 195, 388, 401
AcoI YGGCCR 1 cut(s) 170
AcsI RAATTY 2 cut(s) 399, 546
AcyI GRCGYC 1 cut(s) 372
AdeI CACNNNGTG 1 cut(s) 580
AfaI GTAC 3 cut(s) 426, 506, 684
AfiI CCNNNNNNNGG 4 cut(s) 30, 73, 461, 514
AgsI TTSAA 1 cut(s) 380
AjiI CACGTC 1 cut(s) 208
AjnI CCWGG 1 cut(s) 507
AjuI GAANNNNNNNTTGG 2 cut(s) 470, 502
AlwI GGATC 5 cut(s) 76, 89, 195, 388, 401
AoxI GGCC 4 cut(s) 170, 497, 633, 736
ApoI RAATTY 2 cut(s) 399, 546
ArsI GACNNNNNNTTYG 2 cut(s) 192, 224
AspLEI GCGC 1 cut(s) 374
AspS9I GGNCC 2 cut(s) 51, 633
AsuC2I CCSGG 2 cut(s) 169, 185
AsuHPI GGTGA 5 cut(s) 111, 276, 487, 529, 608
AvaII GGWCC 1 cut(s) 51
BamHI GGATCC 2 cut(s) 81, 393
BanI GGYRCC 1 cut(s) 371
BccI CCATC 5 cut(s) 172, 298, 325, 419, 450
BceAI ACGGC 1 cut(s) 157
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BciT130I CCWGG 1 cut(s) 509
BcnI CCSGG 2 cut(s) 169, 185
BfaI CTAG 1 cut(s) 342
BfoI RGCGCY 1 cut(s) 375
BfuAI ACCTGC 1 cut(s) 168
BglI GCCNNNNNGGC 1 cut(s) 169
Bme1390I CCNGG 3 cut(s) 169, 185, 509
Bme18I GGWCC 1 cut(s) 51
BmgBI CACGTC 1 cut(s) 208
BmgT120I GGNCC 2 cut(s) 51, 633
BmiI GGNNCC 4 cut(s) 52, 83, 373, 395
BmrFI CCNGG 3 cut(s) 169, 185, 509
BmrI ACTGGG 1 cut(s) 470
BmsI GCATC 2 cut(s) 392, 679
BmuI ACTGGG 1 cut(s) 470
BoxI GACNNNNGTC 1 cut(s) 558
BpuMI CCSGG 2 cut(s) 169, 185
BsaHI GRCGYC 1 cut(s) 372
BsaJI CCNNGG 1 cut(s) 183
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 4 cut(s) 30, 73, 461, 514
Bse1I ACTGG 2 cut(s) 432, 465
BseBI CCWGG 1 cut(s) 509
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 2 cut(s) 164, 283
BseLI CCNNNNNNNGG 4 cut(s) 30, 73, 461, 514
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 2 cut(s) 432, 465
BseRI GAGGAG 2 cut(s) 91, 94
BseX3I CGGCCG 1 cut(s) 170
BseYI CCCAGC 1 cut(s) 133
Bsh1236I CGCG 1 cut(s) 416
Bsh1285I CGRYCG 3 cut(s) 58, 173, 562
BshFI GGCC 4 cut(s) 172, 499, 635, 738
BshNI GGYRCC 1 cut(s) 371
BsiEI CGRYCG 3 cut(s) 58, 173, 562
BsiSI CCGG 2 cut(s) 169, 185
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 4 cut(s) 30, 73, 461, 514
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 4 cut(s) 172, 499, 635, 738
Bsp143I GATC 5 cut(s) 36, 81, 187, 214, 393
BspACI CCGC 6 cut(s) 58, 125, 416, 422, 558, 640
BspANI GGCC 4 cut(s) 172, 499, 635, 738
BspCNI CTCAG 1 cut(s) 229
BspFNI CGCG 1 cut(s) 416
BspLI GGNNCC 4 cut(s) 52, 83, 373, 395
BspMI ACCTGC 1 cut(s) 168
BspPI GGATC 5 cut(s) 76, 89, 195, 388, 401
BspT107I GGYRCC 1 cut(s) 371
BsrBI CCGCTC 1 cut(s) 640
BsrI ACTGG 2 cut(s) 432, 465
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 5 cut(s) 36, 81, 187, 214, 393
BssNI GRCGYC 1 cut(s) 372
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 5 cut(s) 146, 255, 271, 298, 707
BstACI GRCGYC 1 cut(s) 372
BstC8I GCNNGC 2 cut(s) 540, 585
BstDEI CTNAG 2 cut(s) 237, 750
BstEII GGTNACC 1 cut(s) 517
BstF5I GGATG 2 cut(s) 164, 283
BstFNI CGCG 1 cut(s) 416
BstH2I RGCGCY 1 cut(s) 375
BstHHI GCGC 1 cut(s) 374
BstKTI GATC 5 cut(s) 39, 84, 190, 217, 396
BstMBI GATC 5 cut(s) 36, 81, 187, 214, 393
BstMCI CGRYCG 3 cut(s) 58, 173, 562
BstMWI GCNNNNNNNGC 3 cut(s) 169, 380, 716
BstNI CCWGG 1 cut(s) 509
BstPAI GACNNNNGTC 1 cut(s) 558
BstPI GGTNACC 1 cut(s) 517
BstSCI CCNGG 3 cut(s) 167, 183, 507
BstUI CGCG 1 cut(s) 416
BstX2I RGATCY 2 cut(s) 81, 393
BstYI RGATCY 2 cut(s) 81, 393
BstZI CGGCCG 1 cut(s) 170
BsuRI GGCC 4 cut(s) 172, 499, 635, 738
BtgZI GCGATG 1 cut(s) 397
BtrI CACGTC 1 cut(s) 208
BtsCI GGATG 2 cut(s) 164, 283
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 2 cut(s) 151, 351
BveI ACCTGC 1 cut(s) 168
Cac8I GCNNGC 2 cut(s) 540, 585
CfoI GCGC 1 cut(s) 374
Cfr13I GGNCC 2 cut(s) 51, 633
CsiI ACCWGGT 1 cut(s) 507
Csp6I GTAC 3 cut(s) 425, 505, 683
CviAII CATG 1 cut(s) 40
CviJI RGCY 9 cut(s) 15, 23, 172, 340, 499, 635, 653, 666, 738
CviKI_1 RGCY 9 cut(s) 15, 23, 172, 340, 499, 635, 653, 666, 738
CviQI GTAC 3 cut(s) 425, 505, 683
DdeI CTNAG 2 cut(s) 237, 750
DinI GGCGCC 1 cut(s) 373
DpnI GATC 5 cut(s) 38, 83, 189, 216, 395
DpnII GATC 5 cut(s) 36, 81, 187, 214, 393
DraIII CACNNNGTG 1 cut(s) 580
EaeI YGGCCR 1 cut(s) 170
EagI CGGCCG 1 cut(s) 170
EclXI CGGCCG 1 cut(s) 170
Eco147I AGGCCT 1 cut(s) 499
Eco47I GGWCC 1 cut(s) 51
Eco52I CGGCCG 1 cut(s) 170
Eco91I GGTNACC 1 cut(s) 517
EcoO65I GGTNACC 1 cut(s) 517
EcoRII CCWGG 1 cut(s) 507
EgeI GGCGCC 1 cut(s) 373
EheI GGCGCC 1 cut(s) 373
FaeI CATG 1 cut(s) 43
FaiI YATR 5 cut(s) 41, 611, 627, 701, 717
FaqI GGGAC 1 cut(s) 194
FatI CATG 1 cut(s) 39
FblI GTMKAC 1 cut(s) 562
FokI GGATG 2 cut(s) 151, 290
FspBI CTAG 1 cut(s) 342
GlaI GCGC 1 cut(s) 373
GsaI CCCAGC 1 cut(s) 137
HaeII RGCGCY 1 cut(s) 375
HaeIII GGCC 4 cut(s) 172, 499, 635, 738
HapII CCGG 2 cut(s) 169, 185
HhaI GCGC 1 cut(s) 374
Hin1I GRCGYC 1 cut(s) 372
Hin1II CATG 1 cut(s) 43
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HincII GTYRAC 2 cut(s) 267, 563
HindII GTYRAC 2 cut(s) 267, 563
HinfI GANTC 3 cut(s) 193, 281, 308
HpaII CCGG 2 cut(s) 169, 185
HphI GGTGA 5 cut(s) 111, 276, 487, 529, 608
Hpy166II GTNNAC 2 cut(s) 267, 563
Hpy188I TCNGA 6 cut(s) 55, 81, 192, 303, 388, 398
Hpy188III TCNNGA 3 cut(s) 236, 275, 312
Hpy8I GTNNAC 2 cut(s) 267, 563
Hpy99I CGWCG 2 cut(s) 30, 178
HpyAV CCTTC 2 cut(s) 643, 673
HpyCH4III ACNGT 5 cut(s) 146, 255, 271, 298, 707
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 1 cut(s) 719
HpyF10VI GCNNNNNNNGC 3 cut(s) 169, 380, 716
HpyF3I CTNAG 2 cut(s) 237, 750
HpySE526I ACGT 1 cut(s) 207
Hsp92I GRCGYC 1 cut(s) 372
Hsp92II CATG 1 cut(s) 43
HspAI GCGC 1 cut(s) 372
KasI GGCGCC 1 cut(s) 371
Kzo9I GATC 5 cut(s) 36, 81, 187, 214, 393
LmnI GCTCC 1 cut(s) 43
LweI GCATC 2 cut(s) 392, 679
MabI ACCWGGT 1 cut(s) 507
MaeI CTAG 1 cut(s) 342
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 3 cut(s) 309, 517, 526
MalI GATC 5 cut(s) 38, 83, 189, 216, 395
MbiI CCGCTC 1 cut(s) 640
MboI GATC 5 cut(s) 36, 81, 187, 214, 393
MboII GAAGA 4 cut(s) 46, 105, 108, 161
MflI RGATCY 2 cut(s) 81, 393
MluCI AATT 6 cut(s) 363, 399, 470, 546, 591, 723
Mly113I GGCGCC 1 cut(s) 372
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 2 cut(s) 59, 78
MnlI CCTC 9 cut(s) 24, 41, 109, 112, 115, 238, 510, 592, 749
MspA1I CMGCKG 1 cut(s) 558
MspI CCGG 2 cut(s) 169, 185
MspR9I CCNGG 3 cut(s) 169, 185, 509
MvaI CCWGG 1 cut(s) 509
MvnI CGCG 1 cut(s) 416
MwoI GCNNNNNNNGC 3 cut(s) 169, 380, 716
NarI GGCGCC 1 cut(s) 372
NciI CCSGG 2 cut(s) 169, 185
NdeII GATC 5 cut(s) 36, 81, 187, 214, 393
NlaIII CATG 1 cut(s) 43
NlaIV GGNNCC 4 cut(s) 52, 83, 373, 395
NmeAIII GCCGAG 2 cut(s) 41, 661
NmuCI GTSAC 3 cut(s) 309, 517, 526
PceI AGGCCT 1 cut(s) 499
PfeI GAWTC 2 cut(s) 193, 281
PleI GAGTC 1 cut(s) 316
PluTI GGCGCC 1 cut(s) 375
PpsI GAGTC 1 cut(s) 316
PshAI GACNNNNGTC 1 cut(s) 558
Psp6I CCWGG 1 cut(s) 507
PspEI GGTNACC 1 cut(s) 517
PspFI CCCAGC 1 cut(s) 133
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 4 cut(s) 52, 83, 373, 395
PspPI GGNCC 2 cut(s) 51, 633
PsuI RGATCY 2 cut(s) 81, 393
RsaI GTAC 3 cut(s) 426, 506, 684
RsaNI GTAC 3 cut(s) 425, 505, 683
SalI GTCGAC 1 cut(s) 561
Sau3AI GATC 5 cut(s) 36, 81, 187, 214, 393
Sau96I GGNCC 2 cut(s) 51, 633
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 3 cut(s) 169, 185, 509
SetI ASST 4 cut(s) 162, 210, 510, 684
SexAI ACCWGGT 1 cut(s) 507
SfaNI GCATC 2 cut(s) 392, 679
SfoI GGCGCC 1 cut(s) 373
SinI GGWCC 1 cut(s) 51
Sse9I AATT 6 cut(s) 363, 399, 470, 546, 591, 723
SseBI AGGCCT 1 cut(s) 499
SsiI CCGC 6 cut(s) 58, 125, 416, 422, 558, 640
SspDI GGCGCC 1 cut(s) 371
SspMI CTAG 1 cut(s) 342
StuI AGGCCT 1 cut(s) 499
StyD4I CCNGG 3 cut(s) 167, 183, 507
TaaI ACNGT 5 cut(s) 146, 255, 271, 298, 707
TaiI ACGT 1 cut(s) 210
TaqI TCGA 3 cut(s) 176, 544, 562
TasI AATT 6 cut(s) 363, 399, 470, 546, 591, 723
TfiI GAWTC 2 cut(s) 193, 281
TscAI CASTG 2 cut(s) 151, 358
TseFI GTSAC 3 cut(s) 309, 517, 526
Tsp45I GTSAC 3 cut(s) 309, 517, 526
TspDTI ATGAA 1 cut(s) 294
TspGWI ACGGA 1 cut(s) 43
TspRI CASTG 2 cut(s) 151, 358
VpaK11BI GGWCC 1 cut(s) 51
XapI RAATTY 2 cut(s) 399, 546
XmiI GTMKAC 1 cut(s) 562
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.