pycom15g09930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0017632
Physical Location & Seq
Forward (+)
6468729 .. 6469181
453 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 453 bp
ATGACGCGGGATGCTTTGCTTCAATCGCCACCTCTAACCCGGCCTCCACCTCGCGAGAGGCGCAGGGTCGGCGAGGTAGCAGGCGGCGCCGCGGCTGAGTGTGCGGCGGTGTGCTGCTGTTGCCCATGCAGCGTCATGAATTTGCTGATACTGACGGTGTACAAGGTCCCGAAAGGGATTTGCAGGAAGGCCTTGGCCCACAGGAAGAATAAGCGGCGGTGCTTGGTGGCCCAGAAGAAGGCATTGTTGCAGCCCAGGCCCAATGGGCTCGCCGGCGGCGGGCTTTATAGCGACGACGACGAATTCTTCAGGAGAGCGAGCAGTTGCAGCGACGTTGACGACGGGAAGGGGAGCGAGGATGAATCGGATGCCGCTGATTTGTTGGAGAAGGAGATATGGGACCGGTTTCACGGTGCCGGATTTTGGAGGAGTGCTTCTCGGATAGATTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.42

Weight (kDa)

8.78

Isoelectric Point (pI)

59.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017632)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g26780
malus_domestica MD03G1160300.v1.1 MD15G1108700.v1.1
prunus_persica Prupe.6G148600_v2.0.a1
pyrus_communis pycom03g11280 pycom08g10970 pycom15g09930
rosa_chinensis RchiOBHm_Chr5g0049201
rosa_rugosa Rorug05G0245700
rosa_samantha Rh5BG334000 Rh5DG346100
rosa_wichuraiana Rw5G030560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 86, 413
AccII CGCG 3 cut(s) 7, 54, 92
AcsI RAATTY 2 cut(s) 139, 302
AcuI CTGAAG 1 cut(s) 292
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 3 cut(s) 238, 279, 423
AgeI ACCGGT 1 cut(s) 402
AgsI TTSAA 1 cut(s) 23
AjnI CCWGG 1 cut(s) 254
AoxI GGCC 5 cut(s) 41, 189, 195, 228, 257
ApeKI GCWGC 4 cut(s) 114, 129, 250, 327
ApoI RAATTY 2 cut(s) 139, 302
AsiGI ACCGGT 1 cut(s) 402
AspLEI GCGC 2 cut(s) 63, 89
AspS9I GGNCC 5 cut(s) 166, 196, 229, 258, 400
AsuC2I CCSGG 1 cut(s) 40
AvaII GGWCC 2 cut(s) 166, 400
BanI GGYRCC 2 cut(s) 86, 413
BanII GRGCYC 1 cut(s) 270
BbvI GCAGC 4 cut(s) 101, 141, 262, 339
BciT130I CCWGG 1 cut(s) 256
BcnI CCSGG 1 cut(s) 40
BfoI RGCGCY 1 cut(s) 90
BglI GCCNNNNNGGC 1 cut(s) 265
Bme1390I CCNGG 2 cut(s) 40, 256
Bme18I GGWCC 2 cut(s) 166, 400
BmgT120I GGNCC 5 cut(s) 166, 196, 229, 258, 400
BmiI GGNNCC 4 cut(s) 88, 168, 401, 415
BmrFI CCNGG 2 cut(s) 40, 256
BmsI GCATC 1 cut(s) 358
BplI GAGNNNNNCTC 2 cut(s) 421, 453
BpuMI CCSGG 1 cut(s) 40
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 3 cut(s) 90, 192, 254
BsaWI WCCGGW 1 cut(s) 402
BsaXI ACNNNNNCTCC 2 cut(s) 28, 58
Bsc4I CCNNNNNNNGG 3 cut(s) 238, 279, 423
Bse118I RCCGGY 2 cut(s) 272, 402
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 3 cut(s) 90, 192, 254
BseGI GGATG 3 cut(s) 16, 364, 373
BseLI CCNNNNNNNGG 3 cut(s) 238, 279, 423
BseMII CTCAG 1 cut(s) 87
BseRI GAGGAG 1 cut(s) 442
BseXI GCAGC 4 cut(s) 101, 141, 262, 339
Bsh1236I CGCG 3 cut(s) 7, 54, 92
BshFI GGCC 5 cut(s) 43, 191, 197, 230, 259
BshNI GGYRCC 2 cut(s) 86, 413
BshTI ACCGGT 1 cut(s) 402
BsiSI CCGG 4 cut(s) 40, 273, 403, 417
BslFI GGGAC 2 cut(s) 152, 413
BslI CCNNNNNNNGG 3 cut(s) 238, 279, 423
BsmFI GGGAC 2 cut(s) 152, 413
BsnI GGCC 5 cut(s) 43, 191, 197, 230, 259
Bsp1286I GDGCHC 1 cut(s) 270
Bsp1407I TGTACA 1 cut(s) 159
Bsp68I TCGCGA 1 cut(s) 54
BspANI GGCC 5 cut(s) 43, 191, 197, 230, 259
BspCNI CTCAG 1 cut(s) 88
BspFNI CGCG 3 cut(s) 7, 54, 92
BspHI TCATGA 1 cut(s) 135
BspLI GGNNCC 4 cut(s) 88, 168, 401, 415
BspT107I GGYRCC 2 cut(s) 86, 413
BsrFI RCCGGY 2 cut(s) 272, 402
BsrGI TGTACA 1 cut(s) 159
BssAI RCCGGY 2 cut(s) 272, 402
BssECI CCNNGG 3 cut(s) 90, 192, 254
BssNI GRCGYC 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 2 cut(s) 157, 413
BstACI GRCGYC 1 cut(s) 87
BstAUI TGTACA 1 cut(s) 159
BstC8I GCNNGC 5 cut(s) 82, 270, 274, 281, 319
BstDEI CTNAG 1 cut(s) 96
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 3 cut(s) 16, 364, 373
BstFNI CGCG 3 cut(s) 7, 54, 92
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 2 cut(s) 63, 89
BstNI CCWGG 1 cut(s) 256
BstSCI CCNGG 2 cut(s) 38, 254
BstUI CGCG 3 cut(s) 7, 54, 92
BstV1I GCAGC 4 cut(s) 101, 141, 262, 339
BsuRI GGCC 5 cut(s) 43, 191, 197, 230, 259
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 3 cut(s) 16, 364, 373
BtuMI TCGCGA 1 cut(s) 54
Cac8I GCNNGC 5 cut(s) 82, 270, 274, 281, 319
CciI TCATGA 1 cut(s) 135
CfoI GCGC 2 cut(s) 63, 89
Cfr10I RCCGGY 2 cut(s) 272, 402
Cfr13I GGNCC 5 cut(s) 166, 196, 229, 258, 400
Cfr42I CCGCGG 1 cut(s) 93
CseI GACGC 2 cut(s) 13, 121
Csp6I GTAC 1 cut(s) 160
CspAI ACCGGT 1 cut(s) 402
CviAII CATG 2 cut(s) 126, 136
CviJI RGCY 9 cut(s) 43, 95, 191, 197, 230, 253, 259, 268, 283
CviKI_1 RGCY 9 cut(s) 43, 95, 191, 197, 230, 253, 259, 268, 283
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 1 cut(s) 96
DinI GGCGCC 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 192
Eco147I AGGCCT 1 cut(s) 191
Eco24I GRGCYC 1 cut(s) 270
Eco47I GGWCC 2 cut(s) 166, 400
Eco57I CTGAAG 1 cut(s) 292
EcoO109I RGGNCCY 1 cut(s) 166
EcoRI GAATTC 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 254
EcoT14I CCWWGG 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 270
EgeI GGCGCC 1 cut(s) 88
EheI GGCGCC 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 2 cut(s) 129, 139
FaiI YATR 4 cut(s) 127, 137, 288, 397
FaqI GGGAC 2 cut(s) 152, 413
FatI CATG 2 cut(s) 125, 135
FauI CCCGC 1 cut(s) 272
FokI GGATG 3 cut(s) 23, 371, 380
FriOI GRGCYC 1 cut(s) 270
GlaI GCGC 2 cut(s) 62, 88
HaeII RGCGCY 1 cut(s) 90
HaeIII GGCC 5 cut(s) 43, 191, 197, 230, 259
HapII CCGG 4 cut(s) 40, 273, 403, 417
HgaI GACGC 2 cut(s) 13, 121
HhaI GCGC 2 cut(s) 63, 89
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 2 cut(s) 129, 139
Hin6I GCGC 2 cut(s) 61, 87
HinP1I GCGC 2 cut(s) 61, 87
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HinfI GANTC 2 cut(s) 362, 446
HpaII CCGG 4 cut(s) 40, 273, 403, 417
Hpy166II GTNNAC 2 cut(s) 160, 337
Hpy188I TCNGA 2 cut(s) 367, 441
Hpy188III TCNNGA 5 cut(s) 53, 136, 169, 310, 450
Hpy8I GTNNAC 2 cut(s) 160, 337
Hpy99I CGWCG 5 cut(s) 296, 299, 302, 335, 344
HpyAV CCTTC 4 cut(s) 181, 232, 340, 382
HpyCH4III ACNGT 2 cut(s) 157, 413
HpyCH4IV ACGT 1 cut(s) 333
HpyCH4V TGCA 4 cut(s) 129, 183, 250, 327
HpyF3I CTNAG 1 cut(s) 96
HpySE526I ACGT 1 cut(s) 333
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 2 cut(s) 129, 139
HspAI GCGC 2 cut(s) 61, 87
KasI GGCGCC 1 cut(s) 86
KroI GCCGGC 1 cut(s) 272
KroNI GCCGGC 1 cut(s) 274
KspI CCGCGG 1 cut(s) 93
LmnI GCTCC 1 cut(s) 351
Lsp1109I GCAGC 4 cut(s) 101, 141, 262, 339
LweI GCATC 1 cut(s) 358
MaeII ACGT 1 cut(s) 333
MboII GAAGA 3 cut(s) 217, 247, 298
MhlI GDGCHC 1 cut(s) 270
MluCI AATT 2 cut(s) 139, 302
Mly113I GGCGCC 1 cut(s) 87
MmeI TCCRAC 1 cut(s) 363
MnlI CCTC 7 cut(s) 42, 51, 54, 60, 67, 349, 420
MreI CGCCGGCG 1 cut(s) 272
MroNI GCCGGC 1 cut(s) 272
MspA1I CMGCKG 2 cut(s) 92, 374
MspI CCGG 4 cut(s) 40, 273, 403, 417
MspR9I CCNGG 2 cut(s) 40, 256
MvaI CCWGG 1 cut(s) 256
MvnI CGCG 3 cut(s) 7, 54, 92
NaeI GCCGGC 1 cut(s) 274
NarI GGCGCC 1 cut(s) 87
NciI CCSGG 1 cut(s) 40
NgoMIV GCCGGC 1 cut(s) 272
NlaIII CATG 2 cut(s) 129, 139
NlaIV GGNNCC 4 cut(s) 88, 168, 401, 415
NruI TCGCGA 1 cut(s) 54
PagI TCATGA 1 cut(s) 135
PceI AGGCCT 1 cut(s) 191
PdiI GCCGGC 1 cut(s) 274
PfeI GAWTC 2 cut(s) 362, 446
PinAI ACCGGT 1 cut(s) 402
PluTI GGCGCC 1 cut(s) 90
PpuMI RGGWCCY 1 cut(s) 166
Psp5II RGGWCCY 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 254
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 4 cut(s) 88, 168, 401, 415
PspPI GGNCC 5 cut(s) 166, 196, 229, 258, 400
PspPPI RGGWCCY 1 cut(s) 166
RruI TCGCGA 1 cut(s) 54
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SacII CCGCGG 1 cut(s) 93
Sau96I GGNCC 5 cut(s) 166, 196, 229, 258, 400
ScrFI CCNGG 2 cut(s) 40, 256
SduI GDGCHC 1 cut(s) 270
SetI ASST 5 cut(s) 34, 52, 78, 168, 336
SfaNI GCATC 1 cut(s) 358
SfoI GGCGCC 1 cut(s) 88
Sfr303I CCGCGG 1 cut(s) 93
SgrAI CRCCGGYG 1 cut(s) 272
SgrBI CCGCGG 1 cut(s) 93
SinI GGWCC 2 cut(s) 166, 400
Sse9I AATT 2 cut(s) 139, 302
SseBI AGGCCT 1 cut(s) 191
SspDI GGCGCC 1 cut(s) 86
StuI AGGCCT 1 cut(s) 191
StyD4I CCNGG 2 cut(s) 38, 254
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 2 cut(s) 157, 413
TaiI ACGT 1 cut(s) 336
TasI AATT 2 cut(s) 139, 302
TatI WGTACW 1 cut(s) 159
TauI GCSGC 7 cut(s) 87, 92, 95, 107, 217, 279, 374
TfiI GAWTC 2 cut(s) 362, 446
TseI GCWGC 4 cut(s) 114, 129, 250, 327
TspDTI ATGAA 2 cut(s) 152, 375
VpaK11BI GGWCC 2 cut(s) 166, 400
XapI RAATTY 2 cut(s) 139, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.