pycom15g10600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012471
Physical Location & Seq
Reverse (-)
7073189 .. 7073750
562 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 450 bp
ATGACTGTTACAAACTTCAACTGCTGCCTCAATCCGCCACCTTCAAATCAAAACCATGGTTCAAGCCCTTCTTTGCCCTCAAAGCAAAATCAAGTACCTGCATGGAACAAAAATGATCATGGATCATGGGCTAAACGATGTGTTGTAGGCATGAGTTGCATCATGATCGGATTCGAAATGGGCAGCGTAGTAAGTAACCAAACCCATGAGGCCATTGCTAAAGTTATGCCTTTGCCGTTGGAAATAGCAACATCAAGTGACCAGAGGGTCGCAAAATGGAGTGAAAAAAGAATGTGCCCACAGTGGAGCCCTAACTCACTGGAGACCATCGTGCCGGAGAATCTTCCAAGGCCGTCTGCTCGAAGAAGATGGGAAGCCGTCGGTTTTTCTAAGGATGCTCCGGCGGTTCAAATGGTTGTTAGAAAAGGTGGCAACTGCTTTGCTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.44

Weight (kDa)

9.24

Isoelectric Point (pI)

62.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25625 AT2G25625
fragaria_vesca FvH4_2g29860
malus_domestica MD08G1140700.v1.1 MD15G1117600.v1.1
prunus_persica Prupe.1G471000_v2.0.a1 Prupe.1G471000_v2.0.a1
pyrus_communis pycom15g10600
rosa_chinensis RchiOBHm_Chr6g0298931
rosa_laevigata RLG00000011472
rosa_multiflora Rmu_sc0021921.1_g000001 Rmu_sc0021922.1_g000001
rosa_roxburghii Rroxscaffold_7G00169200
rosa_rugosa Rorug06G0283800
rosa_samantha Rh6AG395600 Rh6BG403700 Rh6CG409400 Rh6DG396400
rosa_wichuraiana Rw6G034620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
Acc36I ACCTGC 1 cut(s) 106
AciI CCGC 2 cut(s) 35, 404
AclWI GGATC 1 cut(s) 130
AfaI GTAC 1 cut(s) 96
AgsI TTSAA 4 cut(s) 19, 45, 63, 410
Alw26I GTCTC 1 cut(s) 317
AlwI GGATC 1 cut(s) 130
AoxI GGCC 2 cut(s) 210, 350
ApeKI GCWGC 2 cut(s) 24, 183
AsuII TTCGAA 1 cut(s) 174
BaeGI GKGCMC 1 cut(s) 299
BanII GRGCYC 1 cut(s) 311
BbvI GCAGC 2 cut(s) 11, 195
BccI CCATC 2 cut(s) 335, 363
BceAI ACGGC 3 cut(s) 220, 337, 362
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BclI TGATCA 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 317
BfuAI ACCTGC 1 cut(s) 106
BisI GCNGC 2 cut(s) 25, 184
BlsI GCNGC 2 cut(s) 26, 185
BmiI GGNNCC 1 cut(s) 308
BmsI GCATC 2 cut(s) 168, 385
BpmI CTGGAG 1 cut(s) 341
Bpu14I TTCGAA 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 317
BsaJI CCNNGG 2 cut(s) 55, 347
Bse1I ACTGG 1 cut(s) 324
Bse3DI GCAATG 1 cut(s) 213
BseDI CCNNGG 2 cut(s) 55, 347
BseGI GGATG 1 cut(s) 400
BseMI GCAATG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 324
BseSI GKGCMC 1 cut(s) 299
BseXI GCAGC 2 cut(s) 11, 195
BshFI GGCC 2 cut(s) 212, 352
BsiSI CCGG 2 cut(s) 335, 401
BsmAI GTCTC 1 cut(s) 317
BsnI GGCC 2 cut(s) 212, 352
Bso31I GGTCTC 1 cut(s) 317
Bsp119I TTCGAA 1 cut(s) 174
Bsp1286I GDGCHC 2 cut(s) 299, 311
Bsp143I GATC 3 cut(s) 115, 122, 165
Bsp19I CCATGG 1 cut(s) 55
BspACI CCGC 2 cut(s) 35, 404
BspANI GGCC 2 cut(s) 212, 352
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 308
BspMI ACCTGC 1 cut(s) 106
BspPI GGATC 1 cut(s) 130
BspT104I TTCGAA 1 cut(s) 174
BspTNI GGTCTC 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 213
BsrI ACTGG 1 cut(s) 324
BssECI CCNNGG 2 cut(s) 55, 347
BssMI GATC 3 cut(s) 115, 122, 165
BssT1I CCWWGG 2 cut(s) 55, 347
Bst4CI ACNGT 2 cut(s) 7, 303
BstAPI GCANNNNNTGC 1 cut(s) 156
BstBI TTCGAA 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 390
BstDSI CCRYGG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 400
BstKTI GATC 3 cut(s) 118, 125, 168
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 3 cut(s) 115, 122, 165
BstMWI GCNNNNNNNGC 2 cut(s) 82, 156
BstSLI GKGCMC 1 cut(s) 299
BstV1I GCAGC 2 cut(s) 11, 195
BsuRI GGCC 2 cut(s) 212, 352
BtgI CCRYGG 1 cut(s) 55
BtsCI GGATG 1 cut(s) 400
BtsIMutI CAGTG 2 cut(s) 308, 317
BveI ACCTGC 1 cut(s) 106
CciI TCATGA 1 cut(s) 162
Csp6I GTAC 1 cut(s) 95
CviAII CATG 7 cut(s) 56, 102, 119, 126, 151, 163, 206
CviJI RGCY 6 cut(s) 66, 131, 212, 309, 352, 377
CviKI_1 RGCY 6 cut(s) 66, 131, 212, 309, 352, 377
CviQI GTAC 1 cut(s) 95
DdeI CTNAG 1 cut(s) 390
DpnI GATC 3 cut(s) 117, 124, 167
DpnII GATC 3 cut(s) 115, 122, 165
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
EciI GGCGGA 1 cut(s) 24
Eco130I CCWWGG 2 cut(s) 55, 347
Eco24I GRGCYC 1 cut(s) 311
Eco31I GGTCTC 1 cut(s) 317
EcoT14I CCWWGG 2 cut(s) 55, 347
EcoT38I GRGCYC 1 cut(s) 311
ErhI CCWWGG 2 cut(s) 55, 347
FaeI CATG 7 cut(s) 59, 105, 122, 129, 154, 166, 209
FaiI YATR 9 cut(s) 57, 103, 120, 127, 152, 164, 207, 227, 446
FalI AAGNNNNNCTT 2 cut(s) 55, 87
FatI CATG 7 cut(s) 55, 101, 118, 125, 150, 162, 205
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 2 cut(s) 25, 184
FokI GGATG 1 cut(s) 407
FriOI GRGCYC 1 cut(s) 311
Fsp4HI GCNGC 2 cut(s) 25, 184
GluI GCNGC 2 cut(s) 25, 184
GsuI CTGGAG 1 cut(s) 341
HaeIII GGCC 2 cut(s) 212, 352
HapII CCGG 2 cut(s) 335, 401
Hin1II CATG 7 cut(s) 59, 105, 122, 129, 154, 166, 209
HinfI GANTC 2 cut(s) 171, 340
HpaII CCGG 2 cut(s) 335, 401
Hpy188I TCNGA 1 cut(s) 170
Hpy188III TCNNGA 1 cut(s) 163
Hpy99I CGWCG 1 cut(s) 383
HpyAV CCTTC 2 cut(s) 51, 78
HpyCH4III ACNGT 2 cut(s) 7, 303
HpyCH4V TGCA 2 cut(s) 101, 159
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 156
HpyF3I CTNAG 1 cut(s) 390
Hsp92II CATG 7 cut(s) 59, 105, 122, 129, 154, 166, 209
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 3 cut(s) 115, 122, 165
LmnI GCTCC 2 cut(s) 306, 403
LpnPI CCDG 5 cut(s) 111, 275, 305, 348, 414
Lsp1109I GCAGC 2 cut(s) 11, 195
LweI GCATC 2 cut(s) 168, 385
MaeIII GTNAC 3 cut(s) 7, 194, 257
MalI GATC 3 cut(s) 117, 124, 167
MboI GATC 3 cut(s) 115, 122, 165
MboII GAAGA 3 cut(s) 335, 375, 378
MhlI GDGCHC 2 cut(s) 299, 311
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 4 cut(s) 38, 88, 202, 258
MspI CCGG 2 cut(s) 335, 401
MwoI GCNNNNNNNGC 2 cut(s) 82, 156
NcoI CCATGG 1 cut(s) 55
NdeII GATC 3 cut(s) 115, 122, 165
NlaIII CATG 7 cut(s) 59, 105, 122, 129, 154, 166, 209
NlaIV GGNNCC 1 cut(s) 308
NmuCI GTSAC 1 cut(s) 257
NspV TTCGAA 1 cut(s) 174
PagI TCATGA 1 cut(s) 162
PfeI GAWTC 2 cut(s) 171, 340
PkrI GCNGC 2 cut(s) 26, 185
PspN4I GGNNCC 1 cut(s) 308
RsaI GTAC 1 cut(s) 96
RsaNI GTAC 1 cut(s) 95
SatI GCNGC 2 cut(s) 25, 184
Sau3AI GATC 3 cut(s) 115, 122, 165
SduI GDGCHC 2 cut(s) 299, 311
SetI ASST 3 cut(s) 43, 100, 430
SfaNI GCATC 2 cut(s) 168, 385
SfuI TTCGAA 1 cut(s) 174
SsiI CCGC 2 cut(s) 35, 404
StyI CCWWGG 2 cut(s) 55, 347
TaaI ACNGT 2 cut(s) 7, 303
TaqI TCGA 2 cut(s) 174, 361
TfiI GAWTC 2 cut(s) 171, 340
TscAI CASTG 2 cut(s) 308, 324
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 2 cut(s) 24, 183
Tsp45I GTSAC 1 cut(s) 257
TspRI CASTG 2 cut(s) 308, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.