Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006811

Physical Location & Seq

Genomic Coordinates Forward (+)

8301270 .. 8302894

Gene Structure 1625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAAGGGAATGTCGGGGAGAGGGAAGAGAAAAGATGAGGACGATCACGCTTCCGACGGGGACTCTGAAGGCCACCCGCCACCCAAGAAGGCCTCCAAGAGAAACTCTTCCGACGACTCCTCTGACGACTCCTCTGACGACATCACTGTCTGCGAGATATCCAAGAATAGAAGGGTAAGCGTGAGGAACTGGAATGGCAAGGTTGTGGTCGACATTCGCGAGTTCTATGTCAAGGATGGCAAGCAAATGCCTGGAAAAAAAGTTTCTGACTTGGTCGCTCTTGTTTTCAGGAATCTCACTGACGATGGATCAGGTTGGTGCCTTGGAATGTGCTACGGAATCACGTTGAAGAAATTGACAAGGCTGTTAACGAGACTTGATAGCTTAAAGCTTTGGTTTATATTACTAGATTATGTTGTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC4

Protein Analysis

142

Amino Acids

15.78

Weight (kDa)

8.74

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC4	PF02229	51 - 87	2.5e-16	Transcriptional Coactivator p15 (PC4)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09240 AT5G09240 AT5G09240 AT5G09250 AT5G09250 AT5G09250 AT5G09250 AT5G09250
fragaria_vesca	FvH4_1g24880 FvH4_1g24880 FvH4_1g24880
malus_domestica	MD01G1006400.v1.1 MD15G1135200.v1.1
prunus_persica	Prupe.4G275800_v2.0.a1 Prupe.4G275800_v2.0.a1
pyrus_communis	pycom01g00780 pycom15g12190
rosa_chinensis	RchiOBHm_Chr2g0122541
rosa_laevigata	RLG00000018683
rosa_multiflora	Rmu_sc0003832.1_g000005 Rmu_sc0006704.1_g000005
rosa_roxburghii	Rroxscaffold_2G00121490
rosa_rugosa	Rorug02G0239400
rosa_samantha	Rh2BG306800 Rh2CG284900
rosa_wichuraiana	Rw2G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	318
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	1 cut(s)	219
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	1 cut(s)	316
AcuI	CTGAAG	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	349
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	3 cut(s)	384, 391, 422
AluI	AGCT	3 cut(s)	384, 391, 422
Alw26I	GTCTC	1 cut(s)	367
AlwI	GGATC	1 cut(s)	316
AoxI	GGCC	2 cut(s)	70, 90
Asp700I	GAANNNNTTC	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	318
BccI	CCATC	2 cut(s)	230, 299
BciT130I	CCWGG	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	1 cut(s)	407
Bme1390I	CCNGG	1 cut(s)	252
BmiI	GGNNCC	1 cut(s)	320
BmrFI	CCNGG	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	322
Bse1I	ACTGG	1 cut(s)	194
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	322
BseGI	GGATG	1 cut(s)	241
BseNI	ACTGG	1 cut(s)	194
BseRI	GAGGAG	2 cut(s)	109, 121
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	2 cut(s)	72, 92
BshNI	GGYRCC	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	367
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	2 cut(s)	72, 92
Bsp143I	GATC	2 cut(s)	43, 308
Bsp68I	TCGCGA	1 cut(s)	219
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	2 cut(s)	72, 92
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	320
BspPI	GGATC	1 cut(s)	316
BspT107I	GGYRCC	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	2 cut(s)	43, 308
BssT1I	CCWWGG	1 cut(s)	322
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	148
Bst6I	CTCTTC	2 cut(s)	20, 112
BstC8I	GCNNGC	1 cut(s)	242
BstF5I	GGATG	1 cut(s)	241
BstFNI	CGCG	1 cut(s)	219
BstKTI	GATC	2 cut(s)	46, 311
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	2 cut(s)	43, 308
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	250
BstUI	CGCG	1 cut(s)	219
BsuRI	GGCC	2 cut(s)	72, 92
BtsCI	GGATG	1 cut(s)	241
BtsIMutI	CAGTG	2 cut(s)	144, 297
BtuMI	TCGCGA	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	242
CviJI	RGCY	6 cut(s)	72, 92, 364, 384, 391, 422
CviKI_1	RGCY	6 cut(s)	72, 92, 364, 384, 391, 422
DpnI	GATC	2 cut(s)	45, 310
DpnII	GATC	2 cut(s)	43, 308
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
Eam1104I	CTCTTC	2 cut(s)	20, 112
EarI	CTCTTC	2 cut(s)	20, 112
Eco130I	CCWWGG	1 cut(s)	322
Eco147I	AGGCCT	1 cut(s)	92
Eco32I	GATATC	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	250
EcoRV	GATATC	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	322
FaiI	YATR	3 cut(s)	228, 401, 414
FaqI	GGGAC	1 cut(s)	74
FauI	CCCGC	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	210
FokI	GGATG	1 cut(s)	248
FspBI	CTAG	1 cut(s)	407
HaeIII	GGCC	2 cut(s)	72, 92
HincII	GTYRAC	2 cut(s)	211, 369
HindII	GTYRAC	2 cut(s)	211, 369
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	5 cut(s)	62, 116, 128, 292, 339
HpaI	GTTAAC	1 cut(s)	369
Hpy166II	GTNNAC	2 cut(s)	211, 369
Hpy188I	TCNGA	6 cut(s)	55, 67, 112, 124, 136, 268
Hpy188III	TCNNGA	2 cut(s)	218, 289
Hpy8I	GTNNAC	2 cut(s)	211, 369
Hpy99I	CGWCG	2 cut(s)	59, 116
HpyAV	CCTTC	3 cut(s)	62, 82, 165
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4IV	ACGT	1 cut(s)	344
HpySE526I	ACGT	1 cut(s)	344
KspAI	GTTAAC	1 cut(s)	369
Kzo9I	GATC	2 cut(s)	43, 308
LpnPI	CCDG	5 cut(s)	175, 237, 264, 274, 297
MaeI	CTAG	1 cut(s)	407
MaeII	ACGT	1 cut(s)	344
MalI	GATC	2 cut(s)	45, 310
MboI	GATC	2 cut(s)	43, 308
MboII	GAAGA	3 cut(s)	37, 99, 361
MluCI	AATT	1 cut(s)	353
MlyI	GAGTC	3 cut(s)	56, 110, 122
MmeI	TCCRAC	2 cut(s)	78, 135
MnlI	CCTC	6 cut(s)	14, 31, 103, 130, 142, 177
MroXI	GAANNNNTTC	1 cut(s)	106
MseI	TTAA	2 cut(s)	368, 386
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
MvnI	CGCG	1 cut(s)	219
NdeII	GATC	2 cut(s)	43, 308
NlaIV	GGNNCC	1 cut(s)	320
NruI	TCGCGA	1 cut(s)	219
PceI	AGGCCT	1 cut(s)	92
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	106
PfeI	GAWTC	2 cut(s)	292, 339
PflFI	GACNNNGTC	1 cut(s)	272
PleI	GAGTC	3 cut(s)	56, 110, 122
PpsI	GAGTC	3 cut(s)	56, 110, 122
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	320
PsyI	GACNNNGTC	1 cut(s)	272
RruI	TCGCGA	1 cut(s)	219
SalI	GTCGAC	1 cut(s)	209
SaqAI	TTAA	2 cut(s)	368, 386
Sau3AI	GATC	2 cut(s)	43, 308
SchI	GAGTC	3 cut(s)	56, 110, 122
ScrFI	CCNGG	1 cut(s)	252
SetI	ASST	6 cut(s)	204, 316, 347, 386, 393, 424
Sse9I	AATT	1 cut(s)	353
SseBI	AGGCCT	1 cut(s)	92
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	1 cut(s)	407
StuI	AGGCCT	1 cut(s)	92
StyD4I	CCNGG	1 cut(s)	250
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	1 cut(s)	148
TaiI	ACGT	1 cut(s)	347
TaqI	TCGA	1 cut(s)	210
TasI	AATT	1 cut(s)	353
TfiI	GAWTC	2 cut(s)	292, 339
Tru1I	TTAA	2 cut(s)	368, 386
Tru9I	TTAA	2 cut(s)	368, 386
TscAI	CASTG	2 cut(s)	151, 304
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	351
TspRI	CASTG	2 cut(s)	151, 304
Tth111I	GACNNNGTC	1 cut(s)	272
XmiI	GTMKAC	1 cut(s)	210
XmnI	GAANNNNTTC	1 cut(s)	106
XspI	CTAG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.