pycom15g12440

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
8501937 .. 8508585
6649 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g12440.7

Sequence Viewer

Length: 1527 bp
ATGCTGCAATCAAGGAAACTTTTCGGGTTTGAAAAAGCACTTATTGAGGATATTCCAGGGCCACTGTCAAAAGACCTTATGCAACAGCTTGCTTGTAAAGGACAGGCAGATAATAGTAGTGCCGGTGGAGAAGCTTTAGTGGCTACCAGTTCACTTCATGACAATTCTGGAAGAAATAGTTCAGTTGTTTGTAGAACTTCTACGATTAGTTCACCTCATAATGTCATTGTTGAAGCATTTTCTACAGCCTATCAATATTCAGTTAATTCCAATAAGTCCAATTATGGTGGAAAAGGTTCTGAAAGTGATAAGAAATGCTCATCTGAGAGAATGCCTCCTAATGCCATGGAGTTAAGTTCATGTGGGGGACAGGACTATGTGCCTACATGCACAAGTAGAAGGCATTGTTCAACCCCGTCAACATCTGTTAAAGTAAAGGATGAACCTTGGGATGACGGTGTCTTCCAAAATCCGGACAGAAATGCTGGGGGTAAGTTCTCCTTTGACATACTGTCCATAAAGAATGAACCAAGAGTTTTCAATGAAATTAATGAAGATGAGGTTGACCATATGCGGCTGCGTGATCGGTTGAATCTGTTGGCATCTGGTTATGGCTGTGAATTGAACATATCTAGGAGTCATGGATGTTTTGTTAAAGTTGTGCCTTCCGCCAAGTATAGCCCTATTGCCTCAGAATCTGCTAAGCCAATAAACGTCATTCGTCCACGAAAAAGGAAAAAGACTGCCACGGATTCCGTTGAAACGGCGTTGGAGGAAGATGCTCCAGGACTACTGCAGGTATTAGTTGAAAAGGGGGTGCTGGTTAATGAAATTAAGCTTTACGGCGAGATTGAGAGTGAATCCTTGTGTGAAGACAACTTTGCGGAGCTTGAAGCTGTAATATCAAAGCTTTTCTCACAGCGTCAGCCGTTTTTTAAGTTTGCTCCGATACGATGCACCAAGGGCTCAAGAGCTACTTATTGCTTGGCTTGTCTAATTTCACTTGTGGAGCAGAGCCGTTATCTGCAGTTCAGAAATTGGCCGGTTGAATGGGGTTGGTGCCGAGACCTTCAGTCATTTATATTTGTCTTTCCTAAACATAATAGAATTGTGCTGGAACGACCCGAATATGGATATGCAACATACTTCTTTGAGCTATTAGATTCTTTACCTATTGAATGGCAAATCAAGCGCCTGGTGACTGCAATGAAGCTTACCAGCTGTAGCAGGATTTCACTAATTGAGGACAAAGCATTATCGGTTGGAGAAGACTTGACCGAAGGCGAGGCCCAGGTGCTAGTGGAATATGGTTGGGAACCCAATACTGGTTTGGGAACCATGCTCAAGTACCGTGGCAGAGTTGTTCATGACAGAAGAAATGAAACTGATAGCTCGGAGTGGAGATCAAAAATAGGGAAGTTGCTAATCGATGGCTATAATGGTGGGACTCTGATTACAAACAACATCCCAAAGAAGGTTCTAGAATACAGAGATGCTCAAGGACCAGAAATCAAGTTAGAGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

509

Amino Acids

56.91

Weight (kDa)

6.26

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 787
AccB1I GGYRCC 1 cut(s) 1059
AccIII TCCGGA 1 cut(s) 472
AciI CCGC 3 cut(s) 574, 669, 884
AcoI YGGCCR 1 cut(s) 1040
AcuI CTGAAG 1 cut(s) 1055
AfaI GTAC 1 cut(s) 1349
AfiI CCNNNNNNNGG 4 cut(s) 472, 1130, 1325, 1474
AhdI GACNNNNNGTC 2 cut(s) 511, 1072
AjnI CCWGG 4 cut(s) 55, 784, 1194, 1290
Alw21I GWGCWC 1 cut(s) 1524
Alw26I GTCTC 1 cut(s) 1059
AlwNI CAGNNNCTG 1 cut(s) 698
Aor13HI TCCGGA 1 cut(s) 472
AoxI GGCC 3 cut(s) 59, 1040, 1287
ApeKI GCWGC 2 cut(s) 4, 577
AseI ATTAAT 1 cut(s) 549
Asp700I GAANNNNTTC 3 cut(s) 20, 178, 295
AspLEI GCGC 1 cut(s) 1194
AspS9I GGNCC 3 cut(s) 59, 1288, 1502
AsuHPI GGTGA 2 cut(s) 204, 1210
AvaII GGWCC 1 cut(s) 1502
BanI GGYRCC 1 cut(s) 1059
BanII GRGCYC 2 cut(s) 968, 1524
BbsI GAAGAC 3 cut(s) 454, 879, 1275
Bbv12I GWGCWC 1 cut(s) 1524
BbvI GCAGC 1 cut(s) 564
BccI CCATC 1 cut(s) 1424
BceAI ACGGC 4 cut(s) 780, 859, 913, 1002
BciT130I CCWGG 4 cut(s) 57, 786, 1196, 1292
BcoDI GTCTC 1 cut(s) 1059
BfaI CTAG 3 cut(s) 633, 1298, 1481
BfmI CTRYAG 4 cut(s) 243, 794, 1025, 1222
BfoI RGCGCY 1 cut(s) 1195
BfuAI ACCTGC 1 cut(s) 787
BisI GCNGC 3 cut(s) 5, 575, 578
BlpI GCTNAGC 1 cut(s) 702
BlsI GCNGC 3 cut(s) 6, 576, 579
Bme1390I CCNGG 4 cut(s) 57, 786, 1196, 1292
Bme18I GGWCC 1 cut(s) 1502
BmeRI GACNNNNNGTC 2 cut(s) 511, 1072
BmgT120I GGNCC 3 cut(s) 59, 1288, 1502
BmiI GGNNCC 3 cut(s) 1061, 1317, 1336
BmrFI CCNGG 4 cut(s) 57, 786, 1196, 1292
BmsI GCATC 4 cut(s) 611, 769, 944, 1483
BpiI GAAGAC 3 cut(s) 454, 879, 1275
BplI GAGNNNNNCTC 2 cut(s) 319, 351
BpmI CTGGAG 1 cut(s) 768
Bpu1102I GCTNAGC 1 cut(s) 702
BpuEI CTTGAG 3 cut(s) 952, 1328, 1482
Bsa29I ATCGAT 1 cut(s) 1428
BsaI GGTCTC 1 cut(s) 1059
BsaJI CCNNGG 7 cut(s) 56, 345, 446, 747, 960, 1290, 1351
BsaWI WCCGGW 1 cut(s) 472
Bsc4I CCNNNNNNNGG 4 cut(s) 472, 1130, 1325, 1474
Bse118I RCCGGY 2 cut(s) 122, 1042
Bse1I ACTGG 2 cut(s) 147, 1330
Bse3DI GCAATG 1 cut(s) 1212
BseAI TCCGGA 1 cut(s) 472
BseBI CCWGG 4 cut(s) 57, 786, 1196, 1292
BseCI ATCGAT 1 cut(s) 1428
BseDI CCNNGG 7 cut(s) 56, 345, 446, 747, 960, 1290, 1351
BseGI GGATG 4 cut(s) 445, 457, 650, 1464
BseLI CCNNNNNNNGG 4 cut(s) 472, 1130, 1325, 1474
BseMI GCAATG 1 cut(s) 1212
BseMII CTCAG 2 cut(s) 315, 705
BseNI ACTGG 2 cut(s) 147, 1330
BseXI GCAGC 1 cut(s) 564
BseYI CCCAGC 1 cut(s) 485
BshFI GGCC 3 cut(s) 61, 1042, 1289
BshNI GGYRCC 1 cut(s) 1059
BshVI ATCGAT 1 cut(s) 1428
BsiHKAI GWGCWC 1 cut(s) 1524
BsiSI CCGG 3 cut(s) 123, 473, 1043
BslFI GGGAC 2 cut(s) 381, 1459
BslI CCNNNNNNNGG 4 cut(s) 472, 1130, 1325, 1474
BsmAI GTCTC 1 cut(s) 1059
BsmFI GGGAC 2 cut(s) 381, 1459
BsmI GAATGC 1 cut(s) 336
BsnI GGCC 3 cut(s) 61, 1042, 1289
Bso31I GGTCTC 1 cut(s) 1059
Bsp1286I GDGCHC 2 cut(s) 968, 1524
Bsp13I TCCGGA 1 cut(s) 472
Bsp143I GATC 2 cut(s) 583, 1403
Bsp1720I GCTNAGC 1 cut(s) 702
Bsp19I CCATGG 1 cut(s) 345
BspACI CCGC 3 cut(s) 574, 669, 884
BspANI GGCC 3 cut(s) 61, 1042, 1289
BspCNI CTCAG 2 cut(s) 316, 704
BspDI ATCGAT 1 cut(s) 1428
BspEI TCCGGA 1 cut(s) 472
BspHI TCATGA 2 cut(s) 157, 1366
BspLI GGNNCC 3 cut(s) 1061, 1317, 1336
BspMAI CTGCAG 2 cut(s) 798, 1029
BspMI ACCTGC 1 cut(s) 787
BspT107I GGYRCC 1 cut(s) 1059
BspTNI GGTCTC 1 cut(s) 1059
BsrDI GCAATG 1 cut(s) 1212
BsrFI RCCGGY 2 cut(s) 122, 1042
BsrI ACTGG 2 cut(s) 147, 1330
BssAI RCCGGY 2 cut(s) 122, 1042
BssECI CCNNGG 7 cut(s) 56, 345, 446, 747, 960, 1290, 1351
BssMI GATC 2 cut(s) 583, 1403
BssT1I CCWWGG 3 cut(s) 345, 446, 960
Bst2UI CCWGG 4 cut(s) 57, 786, 1196, 1292
Bst4CI ACNGT 4 cut(s) 66, 458, 513, 1352
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 3 cut(s) 324, 691, 702
BstDSI CCRYGG 3 cut(s) 345, 747, 1351
BstF5I GGATG 4 cut(s) 445, 457, 650, 1464
BstH2I RGCGCY 1 cut(s) 1195
BstHHI GCGC 1 cut(s) 1194
BstKTI GATC 2 cut(s) 586, 1406
BstMAI GTCTC 1 cut(s) 1059
BstMBI GATC 2 cut(s) 583, 1403
BstMWI GCNNNNNNNGC 3 cut(s) 140, 963, 1189
BstNI CCWGG 4 cut(s) 57, 786, 1196, 1292
BstNSI RCATGY 1 cut(s) 390
BstSCI CCNGG 4 cut(s) 55, 784, 1194, 1290
BstSFI CTRYAG 4 cut(s) 243, 794, 1025, 1222
BstV1I GCAGC 1 cut(s) 564
BstV2I GAAGAC 3 cut(s) 454, 879, 1275
Bsu15I ATCGAT 1 cut(s) 1428
BsuRI GGCC 3 cut(s) 61, 1042, 1289
BsuTUI ATCGAT 1 cut(s) 1428
BtgI CCRYGG 3 cut(s) 345, 747, 1351
BtsCI GGATG 4 cut(s) 445, 457, 650, 1464
BtsIMutI CAGTG 1 cut(s) 62
BveI ACCTGC 1 cut(s) 787
Cac8I GCNNGC 1 cut(s) 90
CaiI CAGNNNCTG 1 cut(s) 698
CciI TCATGA 2 cut(s) 157, 1366
CfoI GCGC 1 cut(s) 1194
Cfr10I RCCGGY 2 cut(s) 122, 1042
Cfr13I GGNCC 3 cut(s) 59, 1288, 1502
ClaI ATCGAT 1 cut(s) 1428
CseI GACGC 1 cut(s) 911
Csp6I GTAC 1 cut(s) 1348
CspCI CAANNNNNGTGG 4 cut(s) 268, 303, 1333, 1368
CviAII CATG 7 cut(s) 158, 346, 360, 387, 641, 1339, 1367
CviQI GTAC 1 cut(s) 1348
DdeI CTNAG 3 cut(s) 324, 691, 702
DpnI GATC 2 cut(s) 585, 1405
DpnII GATC 2 cut(s) 583, 1403
DriI GACNNNNNGTC 2 cut(s) 511, 1072
EaeI YGGCCR 1 cut(s) 1040
Eam1105I GACNNNNNGTC 2 cut(s) 511, 1072
EciI GGCGGA 1 cut(s) 658
Ecl136II GAGCTC 1 cut(s) 1522
Eco130I CCWWGG 3 cut(s) 345, 446, 960
Eco24I GRGCYC 2 cut(s) 968, 1524
Eco31I GGTCTC 1 cut(s) 1059
Eco47I GGWCC 1 cut(s) 1502
Eco53kI GAGCTC 1 cut(s) 1522
Eco57I CTGAAG 1 cut(s) 1055
EcoICRI GAGCTC 1 cut(s) 1522
EcoRII CCWGG 4 cut(s) 55, 784, 1194, 1290
EcoT14I CCWWGG 3 cut(s) 345, 446, 960
EcoT38I GRGCYC 2 cut(s) 968, 1524
ErhI CCWWGG 3 cut(s) 345, 446, 960
FaeI CATG 7 cut(s) 161, 349, 363, 390, 644, 1342, 1370
FalI AAGNNNNNCTT 4 cut(s) 485, 517, 961, 993
FaqI GGGAC 2 cut(s) 381, 1459
FatI CATG 7 cut(s) 157, 345, 359, 386, 640, 1338, 1366
FauNDI CATATG 1 cut(s) 570
Fnu4HI GCNGC 3 cut(s) 5, 575, 578
FokI GGATG 4 cut(s) 452, 464, 657, 1451
FriOI GRGCYC 2 cut(s) 968, 1524
Fsp4HI GCNGC 3 cut(s) 5, 575, 578
FspBI CTAG 3 cut(s) 633, 1298, 1481
GlaI GCGC 1 cut(s) 1193
GluI GCNGC 3 cut(s) 5, 575, 578
GsaI CCCAGC 1 cut(s) 489
GsuI CTGGAG 1 cut(s) 768
HaeII RGCGCY 1 cut(s) 1195
HaeIII GGCC 3 cut(s) 61, 1042, 1289
HapII CCGG 3 cut(s) 123, 473, 1043
HgaI GACGC 1 cut(s) 911
HhaI GCGC 1 cut(s) 1194
Hin1II CATG 7 cut(s) 161, 349, 363, 390, 644, 1342, 1370
Hin6I GCGC 1 cut(s) 1192
HinP1I GCGC 1 cut(s) 1192
HincII GTYRAC 2 cut(s) 420, 565
HindII GTYRAC 2 cut(s) 420, 565
HindIII AAGCTT 4 cut(s) 132, 836, 908, 1211
HinfI GANTC 7 cut(s) 592, 637, 695, 752, 860, 1163, 1447
HpaII CCGG 3 cut(s) 123, 473, 1043
HphI GGTGA 2 cut(s) 204, 1210
Hpy166II GTNNAC 5 cut(s) 152, 212, 420, 565, 725
Hpy188I TCNGA 7 cut(s) 301, 325, 694, 948, 1034, 1396, 1452
Hpy188III TCNNGA 6 cut(s) 158, 168, 473, 969, 1367, 1481
Hpy8I GTNNAC 5 cut(s) 152, 212, 420, 565, 725
HpyAV CCTTC 5 cut(s) 393, 675, 1079, 1274, 1468
HpyCH4III ACNGT 4 cut(s) 66, 458, 513, 1352
HpyCH4IV ACGT 1 cut(s) 714
HpyCH4V TGCA 8 cut(s) 7, 82, 390, 796, 957, 1027, 1139, 1205
HpyF10VI GCNNNNNNNGC 3 cut(s) 140, 963, 1189
HpyF3I CTNAG 3 cut(s) 324, 691, 702
HpySE526I ACGT 1 cut(s) 714
Hsp92II CATG 7 cut(s) 161, 349, 363, 390, 644, 1342, 1370
HspAI GCGC 1 cut(s) 1192
Kpn2I TCCGGA 1 cut(s) 472
Kzo9I GATC 2 cut(s) 583, 1403
LmnI GCTCC 4 cut(s) 787, 886, 949, 1009
Lsp1109I GCAGC 1 cut(s) 564
LweI GCATC 4 cut(s) 611, 769, 944, 1483
MaeI CTAG 3 cut(s) 633, 1298, 1481
MaeII ACGT 1 cut(s) 714
MaeIII GTNAC 1 cut(s) 1198
MalI GATC 2 cut(s) 585, 1405
MboI GATC 2 cut(s) 583, 1403
MboII GAAGA 7 cut(s) 183, 454, 566, 788, 884, 1280, 1386
MhlI GDGCHC 2 cut(s) 968, 1524
MlyI GAGTC 2 cut(s) 646, 1441
MmeI TCCRAC 2 cut(s) 750, 1243
MnlI CCTC 8 cut(s) 40, 225, 345, 553, 700, 766, 1237, 1279
MroI TCCGGA 1 cut(s) 472
MroXI GAANNNNTTC 3 cut(s) 20, 178, 295
MseI TTAA 8 cut(s) 264, 353, 429, 549, 654, 825, 834, 936
MspA1I CMGCKG 1 cut(s) 1221
MspI CCGG 3 cut(s) 123, 473, 1043
MspR9I CCNGG 4 cut(s) 57, 786, 1196, 1292
Mva1269I GAATGC 1 cut(s) 336
MvaI CCWGG 4 cut(s) 57, 786, 1196, 1292
MwoI GCNNNNNNNGC 3 cut(s) 140, 963, 1189
NcoI CCATGG 1 cut(s) 345
NdeI CATATG 1 cut(s) 570
NdeII GATC 2 cut(s) 583, 1403
NlaIII CATG 7 cut(s) 161, 349, 363, 390, 644, 1342, 1370
NlaIV GGNNCC 3 cut(s) 1061, 1317, 1336
NmeAIII GCCGAG 1 cut(s) 1088
NmuCI GTSAC 1 cut(s) 1198
NspI RCATGY 1 cut(s) 390
PagI TCATGA 2 cut(s) 157, 1366
PctI GAATGC 1 cut(s) 336
PdmI GAANNNNTTC 3 cut(s) 20, 178, 295
PfeI GAWTC 5 cut(s) 592, 695, 752, 860, 1163
PflFI GACNNNGTC 1 cut(s) 458
PfoI TCCNGGA 1 cut(s) 784
PkrI GCNGC 3 cut(s) 6, 576, 579
PleI GAGTC 2 cut(s) 645, 1441
PpsI GAGTC 2 cut(s) 645, 1441
PshBI ATTAAT 1 cut(s) 549
Psp124BI GAGCTC 1 cut(s) 1524
Psp6I CCWGG 4 cut(s) 55, 784, 1194, 1290
PspFI CCCAGC 1 cut(s) 485
PspGI CCWGG 4 cut(s) 55, 784, 1194, 1290
PspN4I GGNNCC 3 cut(s) 1061, 1317, 1336
PspPI GGNCC 3 cut(s) 59, 1288, 1502
PstI CTGCAG 2 cut(s) 798, 1029
PstNI CAGNNNCTG 1 cut(s) 698
PsyI GACNNNGTC 1 cut(s) 458
PvuII CAGCTG 1 cut(s) 1221
RsaI GTAC 1 cut(s) 1349
RsaNI GTAC 1 cut(s) 1348
SacI GAGCTC 1 cut(s) 1524
SaqAI TTAA 8 cut(s) 264, 353, 429, 549, 654, 825, 834, 936
SatI GCNGC 3 cut(s) 5, 575, 578
Sau3AI GATC 2 cut(s) 583, 1403
Sau96I GGNCC 3 cut(s) 59, 1288, 1502
SchI GAGTC 2 cut(s) 646, 1441
ScrFI CCNGG 4 cut(s) 57, 786, 1196, 1292
SduI GDGCHC 2 cut(s) 968, 1524
SfaNI GCATC 4 cut(s) 611, 769, 944, 1483
SfcI CTRYAG 4 cut(s) 243, 794, 1025, 1222
SinI GGWCC 1 cut(s) 1502
SmlI CTYRAG 3 cut(s) 967, 1343, 1497
SmoI CTYRAG 3 cut(s) 967, 1343, 1497
SsiI CCGC 3 cut(s) 574, 669, 884
SspI AATATT 1 cut(s) 257
SspMI CTAG 3 cut(s) 633, 1298, 1481
SstI GAGCTC 1 cut(s) 1524
StyD4I CCNGG 4 cut(s) 55, 784, 1194, 1290
StyI CCWWGG 3 cut(s) 345, 446, 960
TaaI ACNGT 4 cut(s) 66, 458, 513, 1352
TaiI ACGT 1 cut(s) 717
TaqI TCGA 1 cut(s) 1428
TaqII GACCGA 1 cut(s) 1292
TauI GCSGC 1 cut(s) 577
TfiI GAWTC 5 cut(s) 592, 695, 752, 860, 1163
Tru1I TTAA 8 cut(s) 264, 353, 429, 549, 654, 825, 834, 936
Tru9I TTAA 8 cut(s) 264, 353, 429, 549, 654, 825, 834, 936
TscAI CASTG 1 cut(s) 69
TseFI GTSAC 1 cut(s) 1198
TseI GCWGC 2 cut(s) 4, 577
Tsp45I GTSAC 1 cut(s) 1198
TspGWI ACGGA 2 cut(s) 745, 764
TspRI CASTG 1 cut(s) 69
Tth111I GACNNNGTC 1 cut(s) 458
VpaK11BI GGWCC 1 cut(s) 1502
VspI ATTAAT 1 cut(s) 549
XbaI TCTAGA 1 cut(s) 1480
XceI RCATGY 1 cut(s) 390
XcmI CCANNNNNNNNNTGG 1 cut(s) 1327
XmnI GAANNNNTTC 3 cut(s) 20, 178, 295
XspI CTAG 3 cut(s) 633, 1298, 1481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.