Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006596

Physical Location & Seq

Genomic Coordinates Reverse (-)

25511789 .. 25516931

Gene Structure 5143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0245500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGTTGCCACTGCTTTTCGCCACCCCATTGGGATCGTTCAGCTCCATGGTTCTGTTAGTGATGCTGGCTCTGCTAGCAAATGTGGCCATTCGTCTTTCAGATTTATCTCCAAGAATTTTGCTGTTGATGTCGCTTTGCTTAGAAAAGGACATTGTAGCTATAGACAGGGTCAACAGCATGTAGTTTGTGCATTATCTTCTCAGGCTCAAACTACTTGTCCAAGTTCATCCAGCTCCCATGTTGAGAGTGCTTTGATATTAATTCGTCATGGCGAATCTATGTGGAATGAGAAGAACTTGTTCACTGGTTGTGTTGATGTGCCTTTAACAAAGAGAGGTGTAGATGAAGCAATAGAAGCTGGTAAGAGAATTAGCAACATCCCTGTAGATATGATTTATACATCTTCACTGATTCGTGCGCAGATGACAGCCATGCTTACCATGACCCAACACCACTGCAAGAAGGTTCCAATCATTATGCACAACGAGAATCGACAGGCAAAGTCATGGAGTCAAATCTACAGTGAAGATACTGAGAAGCAATCAATTCCAGTTATAACTGCTTGGCAACTGAATGAAAGAATGTATGGTGAATTACAGGGTCTCAATAAGCTAGAGACAGCTGAAAGATATGGAAAGGAACAAGTGCATGAGTGGCGTAGGAGTTACAATAGTCCTCCTCCCAATGGTGAGAGCTTGGAAATGTGTTCCCATAGAGCTGTAGCTTATTTTAAAGACCATATTCAACCACAACTACAATCTGGAAGGCATGTGATGGTTGCTGCCCATGGGAATTCATTAAGGTCTATAATCATGTATCTCGAGAAATTAACTTCTCTAGAGGTTGTTAACTTAGAATTACCAACTGGGCTACCACTGCTTTATATCTATAAGGAGGGGAAATTTATGAGGAGGGGAAGTCCAGTTGGACCTACAGAAGCTGGTGTTTATGCTTATACTGAGAGCTTGGCCCTTTACAAGCAAACGTTGGATGAAAAGTTGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003674 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009408 GO:0009628 GO:0009719 GO:0009725 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010001 GO:0010033 GO:0010243 GO:0010467 GO:0014003 GO:0019538 GO:0019899 GO:0021537 GO:0021543 GO:0021761 GO:0021766 GO:0021782 GO:0022008 GO:0023052 GO:0030154 GO:0030900 GO:0032501 GO:0032502 GO:0032991 GO:0034284 GO:0034641 GO:0034645 GO:0042063 GO:0042221 GO:0043043 GO:0043170 GO:0043434 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051020 GO:0051716 GO:0060322 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1901652 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Hexapep NTP_transf_3 NTP_transferase

Protein Analysis

335

Amino Acids

37.6

Weight (kDa)

8.72

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_Phos_1	PF00300	85 - 156	8.3e-18	Histidine phosphatase superfamily (branch 1)
His_Phos_1	PF00300	180 - 287	8.8e-14	Histidine phosphatase superfamily (branch 1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16610 AT5G16610 AT5G16610
fragaria_vesca	FvH4_1g25400
malus_domestica	MD15G1138100.v1.1
prunus_persica	Prupe.4G281200_v2.0.a1 Prupe.4G281200_v2.0.a1 Prupe.4G281200_v2.0.a1 Prupe.4G281200_v2.0.a1 Prupe.4G281200_v2.0.a1 Prupe.4G281200_v2.0.a1
pyrus_communis	pycom15g12440
rosa_chinensis	RchiOBHm_Chr2g0123431
rosa_laevigata	RLG00000018748 RLG00000018755
rosa_multiflora	Rmu_sc0005876.1_g000009
rosa_roxburghii	Rroxscaffold_2G00120670
rosa_rugosa	Rorug02G0245500 Rorug02G0245600 Rorug02G0245700 Rorug02G0245800
rosa_samantha	Rh2AG304400 Rh2BG312400 Rh2CG290900 Rh2DG328400
rosa_wichuraiana	Rw2G024370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	557
Acc16I	TGCGCA	1 cut(s)	420
AclI	AACGTT	1 cut(s)	986
AclWI	GGATC	1 cut(s)	41
AcoI	YGGCCR	1 cut(s)	85
AcsI	RAATTY	3 cut(s)	115, 793, 902
AfiI	CCNNNNNNNGG	1 cut(s)	686
AgsI	TTSAA	1 cut(s)	746
Alw26I	GTCTC	2 cut(s)	608, 611
AlwI	GGATC	1 cut(s)	41
AlwNI	CAGNNNCTG	1 cut(s)	941
Ama87I	CYCGRG	1 cut(s)	821
AoxI	GGCC	2 cut(s)	85, 969
ApeKI	GCWGC	1 cut(s)	782
ApoI	RAATTY	3 cut(s)	115, 793, 902
ArsI	GACNNNNNNTTYG	2 cut(s)	202, 234
AseI	ATTAAT	1 cut(s)	260
Asp700I	GAANNNNTTC	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	2 cut(s)	929, 970
AsuHPI	GGTGA	2 cut(s)	602, 701
AsuNHI	GCTAGC	1 cut(s)	74
AvaI	CYCGRG	1 cut(s)	821
AvaII	GGWCC	1 cut(s)	929
BalI	TGGCCA	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	769
BccI	CCATC	1 cut(s)	769
BcoDI	GTCTC	2 cut(s)	608, 611
BfaI	CTAG	3 cut(s)	75, 614, 839
BfmI	CTRYAG	5 cut(s)	160, 384, 520, 720, 933
BisI	GCNGC	1 cut(s)	783
BlsI	GCNGC	1 cut(s)	784
Bme18I	GGWCC	1 cut(s)	929
BmeT110I	CYCGRG	1 cut(s)	821
BmgT120I	GGNCC	2 cut(s)	929, 970
BmiI	GGNNCC	1 cut(s)	468
BmrI	ACTGGG	1 cut(s)	876
BmsI	GCATC	1 cut(s)	52
BmtI	GCTAGC	1 cut(s)	78
BmuI	ACTGGG	1 cut(s)	876
BsaI	GGTCTC	1 cut(s)	608
BsaJI	CCNNGG	2 cut(s)	46, 787
BsaXI	ACNNNNNCTCC	2 cut(s)	904, 934
Bsc4I	CCNNNNNNNGG	1 cut(s)	686
Bse1I	ACTGG	4 cut(s)	310, 551, 871, 923
BseDI	CCNNGG	2 cut(s)	46, 787
BseGI	GGATG	3 cut(s)	227, 378, 997
BseLI	CCNNNNNNNGG	1 cut(s)	686
BseMII	CTCAG	3 cut(s)	215, 525, 951
BseNI	ACTGG	4 cut(s)	310, 551, 871, 923
BseRI	GAGGAG	2 cut(s)	669, 925
BseXI	GCAGC	1 cut(s)	769
BshFI	GGCC	2 cut(s)	87, 971
BsiHKCI	CYCGRG	1 cut(s)	821
BslI	CCNNNNNNNGG	1 cut(s)	686
BsmAI	GTCTC	2 cut(s)	608, 611
BsnI	GGCC	2 cut(s)	87, 971
Bso31I	GGTCTC	1 cut(s)	608
BsoBI	CYCGRG	1 cut(s)	821
Bsp143I	GATC	1 cut(s)	33
Bsp19I	CCATGG	2 cut(s)	46, 787
BspANI	GGCC	2 cut(s)	87, 971
BspCNI	CTCAG	3 cut(s)	214, 526, 952
BspLI	GGNNCC	1 cut(s)	468
BspOI	GCTAGC	1 cut(s)	78
BspPI	GGATC	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	608
BsrI	ACTGG	4 cut(s)	310, 551, 871, 923
BssECI	CCNNGG	2 cut(s)	46, 787
BssMI	GATC	1 cut(s)	33
BssT1I	CCWWGG	2 cut(s)	46, 787
Bst4CI	ACNGT	1 cut(s)	524
BstC8I	GCNNGC	2 cut(s)	67, 76
BstDEI	CTNAG	5 cut(s)	140, 201, 534, 853, 960
BstDSI	CCRYGG	2 cut(s)	46, 787
BstF5I	GGATG	3 cut(s)	227, 378, 997
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	1 cut(s)	36
BstMAI	GTCTC	2 cut(s)	608, 611
BstMBI	GATC	1 cut(s)	33
BstMWI	GCNNNNNNNGC	6 cut(s)	71, 75, 84, 356, 655, 877
BstNSI	RCATGY	2 cut(s)	182, 773
BstSFI	CTRYAG	5 cut(s)	160, 384, 520, 720, 933
BstV1I	GCAGC	1 cut(s)	769
BstXI	CCANNNNNNTGG	1 cut(s)	29
BsuRI	GGCC	2 cut(s)	87, 971
BtgI	CCRYGG	2 cut(s)	46, 787
BtsCI	GGATG	3 cut(s)	227, 378, 997
BtsI	GCAGTG	3 cut(s)	9, 454, 875
BtsIMutI	CAGTG	6 cut(s)	9, 303, 407, 454, 529, 875
Cac8I	GCNNGC	2 cut(s)	67, 76
CaiI	CAGNNNCTG	1 cut(s)	941
CfoI	GCGC	1 cut(s)	421
Cfr13I	GGNCC	2 cut(s)	929, 970
DdeI	CTNAG	5 cut(s)	140, 201, 534, 853, 960
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
DraI	TTTAAA	1 cut(s)	733
EaeI	YGGCCR	1 cut(s)	85
Eco130I	CCWWGG	2 cut(s)	46, 787
Eco31I	GGTCTC	1 cut(s)	608
Eco47I	GGWCC	1 cut(s)	929
Eco88I	CYCGRG	1 cut(s)	821
EcoRI	GAATTC	1 cut(s)	793
EcoT14I	CCWWGG	2 cut(s)	46, 787
ErhI	CCWWGG	2 cut(s)	46, 787
Fnu4HI	GCNGC	1 cut(s)	783
FokI	GGATG	3 cut(s)	214, 365, 1004
Fsp4HI	GCNGC	1 cut(s)	783
FspBI	CTAG	3 cut(s)	75, 614, 839
FspI	TGCGCA	1 cut(s)	420
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	1 cut(s)	783
HaeIII	GGCC	2 cut(s)	87, 971
HhaI	GCGC	1 cut(s)	421
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HincII	GTYRAC	2 cut(s)	173, 850
HindII	GTYRAC	2 cut(s)	173, 850
HinfI	GANTC	4 cut(s)	275, 412, 490, 511
HpaI	GTTAAC	1 cut(s)	850
HphI	GGTGA	2 cut(s)	602, 701
Hpy166II	GTNNAC	3 cut(s)	173, 303, 850
Hpy188I	TCNGA	1 cut(s)	101
Hpy188III	TCNNGA	4 cut(s)	762, 821, 823, 839
Hpy8I	GTNNAC	3 cut(s)	173, 303, 850
HpyAV	CCTTC	2 cut(s)	457, 759
HpyCH4III	ACNGT	1 cut(s)	524
HpyCH4IV	ACGT	1 cut(s)	986
HpyCH4V	TGCA	4 cut(s)	191, 459, 481, 649
HpyF10VI	GCNNNNNNNGC	6 cut(s)	71, 75, 84, 356, 655, 877
HpyF3I	CTNAG	5 cut(s)	140, 201, 534, 853, 960
HpySE526I	ACGT	1 cut(s)	986
HspAI	GCGC	1 cut(s)	419
KspAI	GTTAAC	1 cut(s)	850
Kzo9I	GATC	1 cut(s)	33
LmnI	GCTCC	2 cut(s)	48, 239
Lsp1109I	GCAGC	1 cut(s)	769
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	3 cut(s)	75, 614, 839
MaeII	ACGT	1 cut(s)	986
MaeIII	GTNAC	1 cut(s)	665
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MboII	GAAGA	4 cut(s)	189, 304, 396, 539
MlsI	TGGCCA	1 cut(s)	87
MluCI	AATT	9 cut(s)	115, 261, 369, 546, 593, 793, 827, 857, 902
MluNI	TGGCCA	1 cut(s)	87
MlyI	GAGTC	1 cut(s)	520
MmeI	TCCRAC	2 cut(s)	907, 969
MnlI	CCTC	7 cut(s)	329, 687, 690, 835, 889, 903, 906
Mox20I	TGGCCA	1 cut(s)	87
MroXI	GAANNNNTTC	1 cut(s)	299
MscI	TGGCCA	1 cut(s)	87
MseI	TTAA	6 cut(s)	260, 326, 732, 800, 830, 849
Msp20I	TGGCCA	1 cut(s)	87
MspA1I	CMGCKG	1 cut(s)	623
MwoI	GCNNNNNNNGC	6 cut(s)	71, 75, 84, 356, 655, 877
NcoI	CCATGG	2 cut(s)	46, 787
NdeII	GATC	1 cut(s)	33
NheI	GCTAGC	1 cut(s)	74
NlaIV	GGNNCC	1 cut(s)	468
NsbI	TGCGCA	1 cut(s)	420
NspI	RCATGY	2 cut(s)	182, 773
PaeR7I	CTCGAG	1 cut(s)	821
PdmI	GAANNNNTTC	1 cut(s)	299
PfeI	GAWTC	3 cut(s)	275, 412, 490
PflFI	GACNNNGTC	1 cut(s)	168
PkrI	GCNGC	1 cut(s)	784
PleI	GAGTC	1 cut(s)	519
PpsI	GAGTC	1 cut(s)	519
PshBI	ATTAAT	1 cut(s)	260
PsiI	TTATAA	1 cut(s)	557
Psp1406I	AACGTT	1 cut(s)	986
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	2 cut(s)	929, 970
PstNI	CAGNNNCTG	1 cut(s)	941
PsyI	GACNNNGTC	1 cut(s)	168
PvuII	CAGCTG	1 cut(s)	623
SaqAI	TTAA	6 cut(s)	260, 326, 732, 800, 830, 849
SatI	GCNGC	1 cut(s)	783
Sau3AI	GATC	1 cut(s)	33
Sau96I	GGNCC	2 cut(s)	929, 970
SchI	GAGTC	1 cut(s)	520
SfaNI	GCATC	1 cut(s)	52
SfcI	CTRYAG	5 cut(s)	160, 384, 520, 720, 933
Sfr274I	CTCGAG	1 cut(s)	821
SinI	GGWCC	1 cut(s)	929
SlaI	CTCGAG	1 cut(s)	821
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
Sse9I	AATT	9 cut(s)	115, 261, 369, 546, 593, 793, 827, 857, 902
SspMI	CTAG	3 cut(s)	75, 614, 839
StyI	CCWWGG	2 cut(s)	46, 787
TaaI	ACNGT	1 cut(s)	524
TaiI	ACGT	1 cut(s)	989
TaqI	TCGA	2 cut(s)	493, 822
TasI	AATT	9 cut(s)	115, 261, 369, 546, 593, 793, 827, 857, 902
TfiI	GAWTC	3 cut(s)	275, 412, 490
Tru1I	TTAA	6 cut(s)	260, 326, 732, 800, 830, 849
Tru9I	TTAA	6 cut(s)	260, 326, 732, 800, 830, 849
TscAI	CASTG	6 cut(s)	16, 310, 414, 461, 529, 882
TseI	GCWGC	1 cut(s)	782
TspDTI	ATGAA	5 cut(s)	216, 360, 591, 786, 1008
TspRI	CASTG	6 cut(s)	16, 310, 414, 461, 529, 882
Tth111I	GACNNNGTC	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	929
VspI	ATTAAT	1 cut(s)	260
XapI	RAATTY	3 cut(s)	115, 793, 902
XbaI	TCTAGA	1 cut(s)	838
XceI	RCATGY	2 cut(s)	182, 773
XhoI	CTCGAG	1 cut(s)	821
XmnI	GAANNNNTTC	1 cut(s)	299
XspI	CTAG	3 cut(s)	75, 614, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.