No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G16610 AT5G16610 AT5G16610 |
| fragaria_vesca | FvH4_1g25400 |
| malus_domestica | MD15G1138100.v1.1 |
| prunus_persica | Prupe.4G281200_v2.0.a1 Prupe.4G281200_v2.0.a1 Prupe.4G281200_v2.0.a1 Prupe.4G281200_v2.0.a1 Prupe.4G281200_v2.0.a1 Prupe.4G281200_v2.0.a1 |
| pyrus_communis | pycom15g12440 |
| rosa_chinensis | RchiOBHm_Chr2g0123431 |
| rosa_laevigata | RLG00000018748 RLG00000018755 |
| rosa_multiflora | Rmu_sc0005876.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00120670 |
| rosa_rugosa | Rorug02G0245500 Rorug02G0245600 Rorug02G0245700 Rorug02G0245800 |
| rosa_samantha | Rh2AG304400 Rh2BG312400 Rh2CG290900 Rh2DG328400 |
| rosa_wichuraiana | Rw2G024370 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2115 |
| AatII | GACGTC | 1 cut(s) | 107 |
| Acc36I | ACCTGC | 1 cut(s) | 1450 |
| AccB1I | GGYRCC | 1 cut(s) | 1737 |
| AccBSI | CCGCTC | 1 cut(s) | 661 |
| AciI | CCGC | 2 cut(s) | 661, 2121 |
| AcsI | RAATTY | 3 cut(s) | 703, 1008, 1027 |
| AcuI | CTGAAG | 5 cut(s) | 306, 528, 676, 834, 1302 |
| AcyI | GRCGYC | 2 cut(s) | 67, 104 |
| AfaI | GTAC | 3 cut(s) | 781, 916, 2027 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 22, 82, 340, 428, 1135, 1808, 2003, 2152 |
| AflIII | ACRYGT | 1 cut(s) | 534 |
| AgsI | TTSAA | 9 cut(s) | 209, 217, 382, 1571, 1727, 1751, 1796, 1856, 2177 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 535 |
| AhlI | ACTAGT | 3 cut(s) | 782, 911, 920 |
| AjnI | CCWGG | 4 cut(s) | 835, 1447, 1872, 1968 |
| Alw26I | GTCTC | 3 cut(s) | 148, 156, 1768 |
| AoxI | GGCC | 5 cut(s) | 1058, 1665, 1692, 1718, 1965 |
| ApeKI | GCWGC | 6 cut(s) | 26, 188, 276, 1237, 1240, 1597 |
| ApoI | RAATTY | 3 cut(s) | 703, 1008, 1027 |
| AseI | ATTAAT | 1 cut(s) | 1466 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 689 |
| AspLEI | GCGC | 2 cut(s) | 1602, 1872 |
| AspS9I | GGNCC | 5 cut(s) | 640, 1058, 1693, 1744, 1966 |
| AsuC2I | CCSGG | 1 cut(s) | 1742 |
| AsuHPI | GGTGA | 8 cut(s) | 610, 806, 870, 1166, 1226, 1520, 1888, 1973 |
| AvaII | GGWCC | 2 cut(s) | 640, 1744 |
| AxyI | CCTNAGG | 1 cut(s) | 726 |
| BanI | GGYRCC | 1 cut(s) | 1737 |
| BauI | CACGAG | 1 cut(s) | 579 |
| BbsI | GAAGAC | 3 cut(s) | 12, 141, 1953 |
| BbvI | GCAGC | 6 cut(s) | 13, 175, 288, 1224, 1227, 1609 |
| BccI | CCATC | 3 cut(s) | 548, 1049, 2102 |
| BceAI | ACGGC | 1 cut(s) | 54 |
| BciT130I | CCWGG | 4 cut(s) | 837, 1449, 1874, 1970 |
| BclI | TGATCA | 1 cut(s) | 631 |
| BcnI | CCSGG | 1 cut(s) | 1742 |
| BcoDI | GTCTC | 3 cut(s) | 148, 156, 1768 |
| BcuI | ACTAGT | 3 cut(s) | 782, 911, 920 |
| BfaI | CTAG | 6 cut(s) | 192, 423, 783, 912, 921, 1653 |
| BfmI | CTRYAG | 2 cut(s) | 1342, 1900 |
| BfoI | RGCGCY | 2 cut(s) | 1603, 1873 |
| BfuAI | ACCTGC | 1 cut(s) | 1450 |
| BglII | AGATCT | 3 cut(s) | 609, 863, 1196 |
| BisI | GCNGC | 7 cut(s) | 27, 189, 277, 662, 1238, 1241, 1598 |
| BlpI | GCTNAGC | 1 cut(s) | 1365 |
| BlsI | GCNGC | 7 cut(s) | 28, 190, 278, 663, 1239, 1242, 1599 |
| BmcAI | AGTACT | 2 cut(s) | 916, 2027 |
| Bme1390I | CCNGG | 5 cut(s) | 837, 1449, 1742, 1874, 1970 |
| Bme18I | GGWCC | 2 cut(s) | 640, 1744 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 535 |
| BmgT120I | GGNCC | 5 cut(s) | 640, 1058, 1693, 1744, 1966 |
| BmiI | GGNNCC | 4 cut(s) | 1739, 1745, 1995, 2014 |
| BmrFI | CCNGG | 5 cut(s) | 837, 1449, 1742, 1874, 1970 |
| BmsI | GCATC | 6 cut(s) | 313, 660, 1298, 1432, 1622, 2088 |
| BpiI | GAAGAC | 3 cut(s) | 12, 141, 1953 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 719, 751 |
| BpmI | CTGGAG | 1 cut(s) | 1431 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1365 |
| BpuEI | CTTGAG | 1 cut(s) | 1972 |
| BpuMI | CCSGG | 1 cut(s) | 1742 |
| BsaHI | GRCGYC | 2 cut(s) | 67, 104 |
| BsaJI | CCNNGG | 3 cut(s) | 1388, 1410, 1968 |
| BsaWI | WCCGGW | 1 cut(s) | 1801 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 128, 158 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 22, 82, 340, 428, 1135, 1808, 2003, 2152 |
| Bse1I | ACTGG | 4 cut(s) | 87, 1603, 1721, 2008 |
| Bse21I | CCTNAGG | 1 cut(s) | 726 |
| Bse3DI | GCAATG | 2 cut(s) | 645, 1890 |
| BseBI | CCWGG | 4 cut(s) | 837, 1449, 1874, 1970 |
| BseDI | CCNNGG | 3 cut(s) | 1388, 1410, 1968 |
| BseGI | GGATG | 9 cut(s) | 12, 172, 675, 1108, 1257, 1313, 1447, 2113, 2142 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 22, 82, 340, 428, 1135, 1808, 2003, 2152 |
| BseMI | GCAATG | 2 cut(s) | 645, 1890 |
| BseMII | CTCAG | 5 cut(s) | 717, 993, 1101, 1121, 2085 |
| BseNI | ACTGG | 4 cut(s) | 87, 1603, 1721, 2008 |
| BseRI | GAGGAG | 2 cut(s) | 267, 1451 |
| BseXI | GCAGC | 6 cut(s) | 13, 175, 288, 1224, 1227, 1609 |
| BsgI | GTGCAG | 3 cut(s) | 295, 605, 2185 |
| Bsh1285I | CGRYCG | 2 cut(s) | 303, 1802 |
| BshFI | GGCC | 5 cut(s) | 1060, 1667, 1694, 1720, 1967 |
| BshNI | GGYRCC | 1 cut(s) | 1737 |
| BsiEI | CGRYCG | 2 cut(s) | 303, 1802 |
| BsiSI | CCGG | 2 cut(s) | 1741, 1802 |
| BslFI | GGGAC | 3 cut(s) | 385, 1059, 1757 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 22, 82, 340, 428, 1135, 1808, 2003, 2152 |
| BsmAI | GTCTC | 3 cut(s) | 148, 156, 1768 |
| BsmFI | GGGAC | 3 cut(s) | 385, 1059, 1757 |
| BsmI | GAATGC | 3 cut(s) | 388, 731, 1081 |
| BsnI | GGCC | 5 cut(s) | 1060, 1667, 1694, 1720, 1967 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1365 |
| BspACI | CCGC | 2 cut(s) | 661, 2121 |
| BspANI | GGCC | 5 cut(s) | 1060, 1667, 1694, 1720, 1967 |
| BspCNI | CTCAG | 5 cut(s) | 718, 994, 1100, 1122, 2084 |
| BspLI | GGNNCC | 4 cut(s) | 1739, 1745, 1995, 2014 |
| BspMI | ACCTGC | 1 cut(s) | 1450 |
| BspT107I | GGYRCC | 1 cut(s) | 1737 |
| BsrBI | CCGCTC | 1 cut(s) | 661 |
| BsrDI | GCAATG | 2 cut(s) | 645, 1890 |
| BsrI | ACTGG | 4 cut(s) | 87, 1603, 1721, 2008 |
| BssECI | CCNNGG | 3 cut(s) | 1388, 1410, 1968 |
| BssNI | GRCGYC | 2 cut(s) | 67, 104 |
| BssSI | CACGAG | 1 cut(s) | 579 |
| BssT1I | CCWWGG | 1 cut(s) | 1388 |
| Bst2BI | CACGAG | 1 cut(s) | 579 |
| Bst2UI | CCWGG | 4 cut(s) | 837, 1449, 1874, 1970 |
| Bst4CI | ACNGT | 6 cut(s) | 413, 592, 764, 1121, 1939, 2030 |
| Bst6I | CTCTTC | 1 cut(s) | 695 |
| BstACI | GRCGYC | 2 cut(s) | 67, 104 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 670 |
| BstC8I | GCNNGC | 2 cut(s) | 1692, 1907 |
| BstDEI | CTNAG | 8 cut(s) | 726, 1002, 1087, 1130, 1193, 1296, 1365, 2071 |
| BstDSI | CCRYGG | 1 cut(s) | 1410 |
| BstF5I | GGATG | 9 cut(s) | 12, 172, 675, 1108, 1257, 1313, 1447, 2113, 2142 |
| BstH2I | RGCGCY | 2 cut(s) | 1603, 1873 |
| BstHHI | GCGC | 2 cut(s) | 1602, 1872 |
| BstMAI | GTCTC | 3 cut(s) | 148, 156, 1768 |
| BstMCI | CGRYCG | 2 cut(s) | 303, 1802 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 670, 809, 1594, 1867 |
| BstNI | CCWGG | 4 cut(s) | 837, 1449, 1874, 1970 |
| BstNSI | RCATGY | 1 cut(s) | 538 |
| BstSCI | CCNGG | 5 cut(s) | 835, 1447, 1740, 1872, 1968 |
| BstSFI | CTRYAG | 2 cut(s) | 1342, 1900 |
| BstV1I | GCAGC | 6 cut(s) | 13, 175, 288, 1224, 1227, 1609 |
| BstV2I | GAAGAC | 3 cut(s) | 12, 141, 1953 |
| BstX2I | RGATCY | 3 cut(s) | 609, 863, 1196 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1857 |
| BstYI | RGATCY | 3 cut(s) | 609, 863, 1196 |
| Bsu36I | CCTNAGG | 1 cut(s) | 726 |
| BsuRI | GGCC | 5 cut(s) | 1060, 1667, 1694, 1720, 1967 |
| BtgI | CCRYGG | 1 cut(s) | 1410 |
| BtsCI | GGATG | 9 cut(s) | 12, 172, 675, 1108, 1257, 1313, 1447, 2113, 2142 |
| BtsI | GCAGTG | 1 cut(s) | 1581 |
| BtsIMutI | CAGTG | 2 cut(s) | 1126, 1581 |
| BveI | ACCTGC | 1 cut(s) | 1450 |
| Cac8I | GCNNGC | 2 cut(s) | 1692, 1907 |
| CfoI | GCGC | 2 cut(s) | 1602, 1872 |
| Cfr13I | GGNCC | 5 cut(s) | 640, 1058, 1693, 1744, 1966 |
| CseI | GACGC | 2 cut(s) | 75, 146 |
| Csp6I | GTAC | 3 cut(s) | 780, 915, 2026 |
| CviAII | CATG | 6 cut(s) | 50, 535, 616, 1024, 2017, 2045 |
| CviQI | GTAC | 3 cut(s) | 780, 915, 2026 |
| DdeI | CTNAG | 8 cut(s) | 726, 1002, 1087, 1130, 1193, 1296, 1365, 2071 |
| DriI | GACNNNNNGTC | 1 cut(s) | 535 |
| Eam1104I | CTCTTC | 1 cut(s) | 695 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 535 |
| EarI | CTCTTC | 1 cut(s) | 695 |
| EciI | GGCGGA | 1 cut(s) | 2136 |
| Eco130I | CCWWGG | 1 cut(s) | 1388 |
| Eco32I | GATATC | 2 cut(s) | 721, 1581 |
| Eco47I | GGWCC | 2 cut(s) | 640, 1744 |
| Eco57I | CTGAAG | 5 cut(s) | 306, 528, 676, 834, 1302 |
| Eco81I | CCTNAGG | 1 cut(s) | 726 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1744 |
| EcoRI | GAATTC | 1 cut(s) | 1008 |
| EcoRII | CCWGG | 4 cut(s) | 835, 1447, 1872, 1968 |
| EcoRV | GATATC | 2 cut(s) | 721, 1581 |
| EcoT14I | CCWWGG | 1 cut(s) | 1388 |
| ErhI | CCWWGG | 1 cut(s) | 1388 |
| FaeI | CATG | 6 cut(s) | 53, 538, 619, 1027, 2020, 2048 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 800, 832 |
| FaqI | GGGAC | 3 cut(s) | 385, 1059, 1757 |
| FatI | CATG | 6 cut(s) | 49, 534, 615, 1023, 2016, 2044 |
| FbaI | TGATCA | 1 cut(s) | 631 |
| Fnu4HI | GCNGC | 7 cut(s) | 27, 189, 277, 662, 1238, 1241, 1598 |
| FokI | GGATG | 8 cut(s) | 179, 682, 1115, 1264, 1320, 1454, 2120, 2129 |
| Fsp4HI | GCNGC | 7 cut(s) | 27, 189, 277, 662, 1238, 1241, 1598 |
| FspBI | CTAG | 6 cut(s) | 192, 423, 783, 912, 921, 1653 |
| GlaI | GCGC | 2 cut(s) | 1601, 1871 |
| GluI | GCNGC | 7 cut(s) | 27, 189, 277, 662, 1238, 1241, 1598 |
| GsuI | CTGGAG | 1 cut(s) | 1431 |
| HaeII | RGCGCY | 2 cut(s) | 1603, 1873 |
| HaeIII | GGCC | 5 cut(s) | 1060, 1667, 1694, 1720, 1967 |
| HapII | CCGG | 2 cut(s) | 1741, 1802 |
| HgaI | GACGC | 2 cut(s) | 75, 146 |
| HhaI | GCGC | 2 cut(s) | 1602, 1872 |
| Hin1I | GRCGYC | 2 cut(s) | 67, 104 |
| Hin1II | CATG | 6 cut(s) | 53, 538, 619, 1027, 2020, 2048 |
| Hin6I | GCGC | 2 cut(s) | 1600, 1870 |
| HinP1I | GCGC | 2 cut(s) | 1600, 1870 |
| HindIII | AAGCTT | 4 cut(s) | 1499, 1527, 1586, 1889 |
| HpaII | CCGG | 2 cut(s) | 1741, 1802 |
| HphI | GGTGA | 8 cut(s) | 610, 806, 870, 1166, 1226, 1520, 1888, 1973 |
| Hpy166II | GTNNAC | 2 cut(s) | 314, 878 |
| Hpy188III | TCNNGA | 6 cut(s) | 153, 233, 638, 767, 1129, 1516 |
| Hpy8I | GTNNAC | 2 cut(s) | 314, 878 |
| Hpy99I | CGWCG | 3 cut(s) | 69, 106, 159 |
| HpyAV | CCTTC | 5 cut(s) | 1338, 1633, 1757, 1952, 2146 |
| HpyCH4III | ACNGT | 6 cut(s) | 413, 592, 764, 1121, 1939, 2030 |
| HpyCH4IV | ACGT | 2 cut(s) | 104, 157 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 670, 809, 1594, 1867 |
| HpyF3I | CTNAG | 8 cut(s) | 726, 1002, 1087, 1130, 1193, 1296, 1365, 2071 |
| HpySE526I | ACGT | 2 cut(s) | 104, 157 |
| Hsp92I | GRCGYC | 2 cut(s) | 67, 104 |
| Hsp92II | CATG | 6 cut(s) | 53, 538, 619, 1027, 2020, 2048 |
| HspAI | GCGC | 2 cut(s) | 1600, 1870 |
| Ksp22I | TGATCA | 1 cut(s) | 631 |
| LmnI | GCTCC | 3 cut(s) | 254, 1450, 1627 |
| Lsp1109I | GCAGC | 6 cut(s) | 13, 175, 288, 1224, 1227, 1609 |
| LweI | GCATC | 6 cut(s) | 313, 660, 1298, 1432, 1622, 2088 |
| MaeI | CTAG | 6 cut(s) | 192, 423, 783, 912, 921, 1653 |
| MaeII | ACGT | 2 cut(s) | 104, 157 |
| MbiI | CCGCTC | 1 cut(s) | 661 |
| MfeI | CAATTG | 1 cut(s) | 1851 |
| MflI | RGATCY | 3 cut(s) | 609, 863, 1196 |
| MlyI | GAGTC | 6 cut(s) | 158, 356, 1141, 1446, 1547, 1652 |
| MmeI | TCCRAC | 3 cut(s) | 678, 1921, 2175 |
| MnlI | CCTC | 9 cut(s) | 245, 709, 721, 770, 1096, 1429, 1432, 1641, 1957 |
| MroXI | GAANNNNTTC | 1 cut(s) | 689 |
| MseI | TTAA | 8 cut(s) | 126, 513, 1031, 1167, 1317, 1422, 1466, 1614 |
| MslI | CAYNNNNRTG | 1 cut(s) | 321 |
| MspA1I | CMGCKG | 1 cut(s) | 1899 |
| MspI | CCGG | 2 cut(s) | 1741, 1802 |
| MspR9I | CCNGG | 5 cut(s) | 837, 1449, 1742, 1874, 1970 |
| MunI | CAATTG | 1 cut(s) | 1851 |
| Mva1269I | GAATGC | 3 cut(s) | 388, 731, 1081 |
| MvaI | CCWGG | 4 cut(s) | 837, 1449, 1874, 1970 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 670, 809, 1594, 1867 |
| NciI | CCSGG | 1 cut(s) | 1742 |
| NlaIII | CATG | 6 cut(s) | 53, 538, 619, 1027, 2020, 2048 |
| NlaIV | GGNNCC | 4 cut(s) | 1739, 1745, 1995, 2014 |
| NmuCI | GTSAC | 8 cut(s) | 359, 983, 1121, 1154, 1214, 1266, 1285, 1876 |
| NspI | RCATGY | 1 cut(s) | 538 |
| PciI | ACATGT | 1 cut(s) | 534 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 144, 1643 |
| PctI | GAATGC | 3 cut(s) | 388, 731, 1081 |
| PdmI | GAANNNNTTC | 1 cut(s) | 689 |
| PfeI | GAWTC | 6 cut(s) | 32, 293, 1255, 1358, 1415, 1841 |
| PflFI | GACNNNGTC | 1 cut(s) | 140 |
| PfoI | TCCNGGA | 2 cut(s) | 835, 1447 |
| PkrI | GCNGC | 7 cut(s) | 28, 190, 278, 663, 1239, 1242, 1599 |
| PleI | GAGTC | 6 cut(s) | 157, 356, 1140, 1446, 1546, 1651 |
| PpsI | GAGTC | 6 cut(s) | 157, 356, 1140, 1446, 1546, 1651 |
| PpuMI | RGGWCCY | 1 cut(s) | 1744 |
| PscI | ACATGT | 1 cut(s) | 534 |
| PshBI | ATTAAT | 1 cut(s) | 1466 |
| PsiI | TTATAA | 1 cut(s) | 2115 |
| Psp5II | RGGWCCY | 1 cut(s) | 1744 |
| Psp6I | CCWGG | 4 cut(s) | 835, 1447, 1872, 1968 |
| PspGI | CCWGG | 4 cut(s) | 835, 1447, 1872, 1968 |
| PspN4I | GGNNCC | 4 cut(s) | 1739, 1745, 1995, 2014 |
| PspPI | GGNCC | 5 cut(s) | 640, 1058, 1693, 1744, 1966 |
| PspPPI | RGGWCCY | 1 cut(s) | 1744 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2116, 2148 |
| PsuI | RGATCY | 3 cut(s) | 609, 863, 1196 |
| PsyI | GACNNNGTC | 1 cut(s) | 140 |
| PvuII | CAGCTG | 1 cut(s) | 1899 |
| RsaI | GTAC | 3 cut(s) | 781, 916, 2027 |
| RsaNI | GTAC | 3 cut(s) | 780, 915, 2026 |
| RseI | CAYNNNNRTG | 1 cut(s) | 321 |
| SaqAI | TTAA | 8 cut(s) | 126, 513, 1031, 1167, 1317, 1422, 1466, 1614 |
| SatI | GCNGC | 7 cut(s) | 27, 189, 277, 662, 1238, 1241, 1598 |
| Sau96I | GGNCC | 5 cut(s) | 640, 1058, 1693, 1744, 1966 |
| ScaI | AGTACT | 2 cut(s) | 916, 2027 |
| SchI | GAGTC | 6 cut(s) | 158, 356, 1141, 1446, 1547, 1652 |
| ScrFI | CCNGG | 5 cut(s) | 837, 1449, 1742, 1874, 1970 |
| SfaNI | GCATC | 6 cut(s) | 313, 660, 1298, 1432, 1622, 2088 |
| SfcI | CTRYAG | 2 cut(s) | 1342, 1900 |
| SinI | GGWCC | 2 cut(s) | 640, 1744 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 321 |
| SmlI | CTYRAG | 1 cut(s) | 1951 |
| SmoI | CTYRAG | 1 cut(s) | 1951 |
| SpeI | ACTAGT | 3 cut(s) | 782, 911, 920 |
| SsiI | CCGC | 2 cut(s) | 661, 2121 |
| SspMI | CTAG | 6 cut(s) | 192, 423, 783, 912, 921, 1653 |
| StyD4I | CCNGG | 5 cut(s) | 835, 1447, 1740, 1872, 1968 |
| StyI | CCWWGG | 1 cut(s) | 1388 |
| TaaI | ACNGT | 6 cut(s) | 413, 592, 764, 1121, 1939, 2030 |
| TaiI | ACGT | 2 cut(s) | 107, 160 |
| TaqI | TCGA | 3 cut(s) | 154, 303, 1646 |
| TaqII | GACCGA | 1 cut(s) | 289 |
| TatI | WGTACW | 2 cut(s) | 914, 2025 |
| TauI | GCSGC | 1 cut(s) | 664 |
| TfiI | GAWTC | 6 cut(s) | 32, 293, 1255, 1358, 1415, 1841 |
| Tru1I | TTAA | 8 cut(s) | 126, 513, 1031, 1167, 1317, 1422, 1466, 1614 |
| Tru9I | TTAA | 8 cut(s) | 126, 513, 1031, 1167, 1317, 1422, 1466, 1614 |
| TscAI | CASTG | 2 cut(s) | 1126, 1581 |
| TseFI | GTSAC | 8 cut(s) | 359, 983, 1121, 1154, 1214, 1266, 1285, 1876 |
| TseI | GCWGC | 6 cut(s) | 26, 188, 276, 1237, 1240, 1597 |
| Tsp45I | GTSAC | 8 cut(s) | 359, 983, 1121, 1154, 1214, 1266, 1285, 1876 |
| TspDTI | ATGAA | 9 cut(s) | 575, 921, 1040, 1119, 1268, 1506, 1539, 1901, 2073 |
| TspGWI | ACGGA | 3 cut(s) | 45, 261, 1427 |
| TspRI | CASTG | 2 cut(s) | 1126, 1581 |
| Tth111I | GACNNNGTC | 1 cut(s) | 140 |
| VpaK11BI | GGWCC | 2 cut(s) | 640, 1744 |
| VspI | ATTAAT | 1 cut(s) | 1466 |
| XapI | RAATTY | 3 cut(s) | 703, 1008, 1027 |
| XceI | RCATGY | 1 cut(s) | 538 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2005 |
| XmnI | GAANNNNTTC | 1 cut(s) | 689 |
| XspI | CTAG | 6 cut(s) | 192, 423, 783, 912, 921, 1653 |
| ZraI | GACGTC | 1 cut(s) | 105 |
| ZrmI | AGTACT | 2 cut(s) | 916, 2027 |