Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006596

Physical Location & Seq

Genomic Coordinates Reverse (-)

38257591 .. 38263352

Gene Structure 5762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG304400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1710 bp

ATGGAAGACGACATCCCCAAATTGGCTGCTGATTCCGATGAGCTTGACCATGTTCCGTTGATACGACGCCGTAACCTGTTACTGGCTACCAAGCAAAAACCGACGTCTCTCATTGATATTGCTCTTAAACAAGAAGACGCAGTCTCCGAGTCTCGACGTTTGCAGGATGTGTTTTCTTTTCCTTGTGCTGCTAGAGAAGTGGGAGTTCAATTATTGGAACAAGAAGAACATCGGGATTTTGCAACTCCCAGAGGAGCTACACCTGAACTTCCGTTCTGCAAAACTGAAGTAGATTCTTCTGTCGATCAATGTTTACATAATGACGCTTTCAGCCGATGTGTGGAAATGACTGCTATCTGCGACTCCAATGGGACAAAGTTGAATACTTTTGCTTCTTCCGATCAGATTGACTGTACTAAACCTAGCATTGGTGTTGCTCAACTAAAGAGAATTGATGTTGATAGTTGCACTCTACCTGAAAATCCTACACTATCAGAAGTTTCTGCTGAAGTTAAGGTTGCTTACCCTGACAACTTGTCAAGCTCATTTGGAGATGGAATGAATGGCTTTGCTGGTTCTCGTGTGCAGACTGTTATGGTGAAAAATGAAATCTCCATGCACTCTACTTATGATCATCTGGACCACATTGCCCTGAAAGAGCGGCAAAGGATGCTACTAGCAAGGAAACTCTTCAGGTTGGAAAATTCAGTTTCGGAGGATATCCCTGAGGCATTCTCGGAAGATGTTTTGCAACAACTTGACAGTCAAGAAAAGGGAGGTACTAGTATTGTTGGTGAAGAAGCTGTAAAGGCTACCTTTCAGCCTTATGACAATCCTGGAACAAATGCTTCAGTTCTTTGTAGATCTATGATCAGTTCACCACAACAGAATGTTGCTTTCTCATCATCTACTAGTACTACTAGTCAATTTTCATTTGATGTAGCTAAATCTAAATCAAACGATTATAGGAAAAGTTCTGAAAGTGACAAGATATGCTCATCTGAGAGAATTCCCCCTACTGCCATGAATTTAAGTCCATGTGGGGGACAAGATGATGGGCCTACAGGCACAAGTAGAGTGCATTCCTCAGTCAAAATAAAGGATGAACCTTTGGACAACAGTGACTTCCTGAGTCTGGGCAGATGTGTTAGGGGTGACTTCTCTCTTAACATACTTCCTGTAAAGCAAGAACTTAGATCTACCAACAAAATTGGTGACGATGAGATAGACAATATGCTGCTGCGAGATCGGATGAATCTATTGGTGTCACAAGAGAACTCTGAAGTGAGAATGTCTAAGAACTATGGATGCTTGGTTAAAATTGTGCCTTCTGCCGTTAGCTGTAGCCCTATTTCCGAATCTGCTAAGCCTATAAGCATTAGTCGTCCAAGGAAAAGGAAAAAGACTGCCACGGATTCTATTAAAACAGCTTTGGAGGAGGATGCTCCAGGACTCTTGCAGGTATTAATTGACAAGGGGGTATTGGTTGATGAAATCAAGCTTTATGGTGAGATCGAGAGTGATGAAGCTTTAGATGAGTCTTTTCGTGAAGATAGCTTTGCACAGCTTGAAGCAGTGATATCAAAGCTTTTCTCGCAGCGCCAGTCGTTTTTTAAGTTTGCTCCAATACGATGCACGAAGGAGTCGAGGGCTAGTTATTGCTTGGCTTGTCTAATTTCACTTGTAGAGCAGGTAATAGGTTGCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

569

Amino Acids

62.73

Weight (kDa)

4.97

Isoelectric Point (pI)

54.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16610 AT5G16610 AT5G16610
fragaria_vesca	FvH4_1g25400
malus_domestica	MD15G1138100.v1.1
prunus_persica	Prupe.4G281200_v2.0.a1 Prupe.4G281200_v2.0.a1 Prupe.4G281200_v2.0.a1 Prupe.4G281200_v2.0.a1 Prupe.4G281200_v2.0.a1 Prupe.4G281200_v2.0.a1
pyrus_communis	pycom15g12440
rosa_chinensis	RchiOBHm_Chr2g0123431
rosa_laevigata	RLG00000018748 RLG00000018755
rosa_multiflora	Rmu_sc0005876.1_g000009
rosa_roxburghii	Rroxscaffold_2G00120670
rosa_rugosa	Rorug02G0245500 Rorug02G0245600 Rorug02G0245700 Rorug02G0245800
rosa_samantha	Rh2AG304400 Rh2BG312400 Rh2CG290900 Rh2DG328400
rosa_wichuraiana	Rw2G024370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1708
AatII	GACGTC	1 cut(s)	107
Acc36I	ACCTGC	2 cut(s)	1450, 1681
AccBSI	CCGCTC	1 cut(s)	661
AciI	CCGC	1 cut(s)	661
AcsI	RAATTY	3 cut(s)	703, 1008, 1027
AcuI	CTGAAG	5 cut(s)	306, 528, 676, 834, 1302
AcyI	GRCGYC	2 cut(s)	67, 104
AfaI	GTAC	3 cut(s)	415, 781, 916
AfiI	CCNNNNNNNGG	6 cut(s)	22, 82, 340, 428, 1043, 1135
AgsI	TTSAA	3 cut(s)	209, 382, 1571
AhdI	GACNNNNNGTC	1 cut(s)	535
AhlI	ACTAGT	3 cut(s)	782, 911, 920
AjnI	CCWGG	2 cut(s)	835, 1447
Alw26I	GTCTC	3 cut(s)	111, 148, 156
AoxI	GGCC	1 cut(s)	1058
ApeKI	GCWGC	5 cut(s)	26, 188, 1237, 1240, 1597
ApoI	RAATTY	3 cut(s)	703, 1008, 1027
AseI	ATTAAT	1 cut(s)	1466
Asp700I	GAANNNNTTC	1 cut(s)	689
AspLEI	GCGC	1 cut(s)	1602
AspS9I	GGNCC	2 cut(s)	640, 1058
AsuHPI	GGTGA	6 cut(s)	610, 806, 870, 1166, 1226, 1520
AvaII	GGWCC	1 cut(s)	640
AxyI	CCTNAGG	1 cut(s)	726
BauI	CACGAG	1 cut(s)	579
BbsI	GAAGAC	2 cut(s)	12, 141
BbvI	GCAGC	5 cut(s)	13, 175, 1224, 1227, 1609
BccI	CCATC	2 cut(s)	548, 1049
BceAI	ACGGC	2 cut(s)	54, 1319
BciT130I	CCWGG	2 cut(s)	837, 1449
BclI	TGATCA	2 cut(s)	631, 870
BcoDI	GTCTC	3 cut(s)	111, 148, 156
BcuI	ACTAGT	3 cut(s)	782, 911, 920
BfaI	CTAG	7 cut(s)	192, 423, 677, 783, 912, 921, 1653
BfmI	CTRYAG	2 cut(s)	1062, 1342
BfoI	RGCGCY	1 cut(s)	1603
BfuAI	ACCTGC	2 cut(s)	1450, 1681
BglII	AGATCT	2 cut(s)	863, 1196
BisI	GCNGC	6 cut(s)	27, 189, 662, 1238, 1241, 1598
BlpI	GCTNAGC	1 cut(s)	1365
BlsI	GCNGC	6 cut(s)	28, 190, 663, 1239, 1242, 1599
BmcAI	AGTACT	1 cut(s)	916
Bme1390I	CCNGG	2 cut(s)	837, 1449
Bme18I	GGWCC	1 cut(s)	640
BmeRI	GACNNNNNGTC	1 cut(s)	535
BmgT120I	GGNCC	2 cut(s)	640, 1058
BmrFI	CCNGG	2 cut(s)	837, 1449
BmsI	GCATC	4 cut(s)	660, 1298, 1432, 1622
BpiI	GAAGAC	2 cut(s)	12, 141
BplI	GAGNNNNNCTC	2 cut(s)	719, 751
BpmI	CTGGAG	1 cut(s)	1431
Bpu1102I	GCTNAGC	1 cut(s)	1365
BsaHI	GRCGYC	2 cut(s)	67, 104
BsaJI	CCNNGG	2 cut(s)	1388, 1410
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	6 cut(s)	22, 82, 340, 428, 1043, 1135
Bse1I	ACTGG	2 cut(s)	87, 1603
Bse21I	CCTNAGG	1 cut(s)	726
Bse3DI	GCAATG	1 cut(s)	645
BseBI	CCWGG	2 cut(s)	837, 1449
BseDI	CCNNGG	2 cut(s)	1388, 1410
BseGI	GGATG	7 cut(s)	12, 172, 675, 1108, 1257, 1313, 1447
BseLI	CCNNNNNNNGG	6 cut(s)	22, 82, 340, 428, 1043, 1135
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	4 cut(s)	717, 993, 1101, 1121
BseNI	ACTGG	2 cut(s)	87, 1603
BseRI	GAGGAG	2 cut(s)	267, 1451
BseXI	GCAGC	5 cut(s)	13, 175, 1224, 1227, 1609
BsgI	GTGCAG	1 cut(s)	605
BshFI	GGCC	1 cut(s)	1060
BslFI	GGGAC	2 cut(s)	385, 1059
BslI	CCNNNNNNNGG	6 cut(s)	22, 82, 340, 428, 1043, 1135
BsmAI	GTCTC	3 cut(s)	111, 148, 156
BsmBI	CGTCTC	1 cut(s)	111
BsmFI	GGGAC	2 cut(s)	385, 1059
BsmI	GAATGC	2 cut(s)	731, 1081
BsnI	GGCC	1 cut(s)	1060
Bsp143I	GATC	8 cut(s)	304, 400, 631, 863, 870, 1196, 1246, 1512
Bsp1720I	GCTNAGC	1 cut(s)	1365
BspACI	CCGC	1 cut(s)	661
BspANI	GGCC	1 cut(s)	1060
BspCNI	CTCAG	4 cut(s)	718, 994, 1100, 1122
BspMI	ACCTGC	2 cut(s)	1450, 1681
BsrBI	CCGCTC	1 cut(s)	661
BsrDI	GCAATG	1 cut(s)	645
BsrI	ACTGG	2 cut(s)	87, 1603
BssECI	CCNNGG	2 cut(s)	1388, 1410
BssMI	GATC	8 cut(s)	304, 400, 631, 863, 870, 1196, 1246, 1512
BssNI	GRCGYC	2 cut(s)	67, 104
BssSI	CACGAG	1 cut(s)	579
BssT1I	CCWWGG	1 cut(s)	1388
Bst2BI	CACGAG	1 cut(s)	579
Bst2UI	CCWGG	2 cut(s)	837, 1449
Bst4CI	ACNGT	4 cut(s)	413, 592, 764, 1121
Bst6I	CTCTTC	1 cut(s)	695
BstACI	GRCGYC	2 cut(s)	67, 104
BstAPI	GCANNNNNTGC	1 cut(s)	670
BstDEI	CTNAG	7 cut(s)	726, 1002, 1087, 1130, 1193, 1296, 1365
BstDSI	CCRYGG	1 cut(s)	1410
BstF5I	GGATG	7 cut(s)	12, 172, 675, 1108, 1257, 1313, 1447
BstH2I	RGCGCY	1 cut(s)	1603
BstHHI	GCGC	1 cut(s)	1602
BstKTI	GATC	8 cut(s)	307, 403, 634, 866, 873, 1199, 1249, 1515
BstMAI	GTCTC	3 cut(s)	111, 148, 156
BstMBI	GATC	8 cut(s)	304, 400, 631, 863, 870, 1196, 1246, 1512
BstMWI	GCNNNNNNNGC	3 cut(s)	670, 809, 1594
BstNI	CCWGG	2 cut(s)	837, 1449
BstSCI	CCNGG	2 cut(s)	835, 1447
BstSFI	CTRYAG	2 cut(s)	1062, 1342
BstV1I	GCAGC	5 cut(s)	13, 175, 1224, 1227, 1609
BstV2I	GAAGAC	2 cut(s)	12, 141
BstX2I	RGATCY	2 cut(s)	863, 1196
BstYI	RGATCY	2 cut(s)	863, 1196
Bsu36I	CCTNAGG	1 cut(s)	726
BsuRI	GGCC	1 cut(s)	1060
BtgI	CCRYGG	1 cut(s)	1410
BtsCI	GGATG	7 cut(s)	12, 172, 675, 1108, 1257, 1313, 1447
BtsI	GCAGTG	1 cut(s)	1581
BtsIMutI	CAGTG	2 cut(s)	1126, 1581
BveI	ACCTGC	2 cut(s)	1450, 1681
CfoI	GCGC	1 cut(s)	1602
Cfr13I	GGNCC	2 cut(s)	640, 1058
CseI	GACGC	3 cut(s)	75, 146, 332
Csp6I	GTAC	3 cut(s)	414, 780, 915
CviAII	CATG	4 cut(s)	50, 616, 1024, 1038
CviQI	GTAC	3 cut(s)	414, 780, 915
DdeI	CTNAG	7 cut(s)	726, 1002, 1087, 1130, 1193, 1296, 1365
DpnI	GATC	8 cut(s)	306, 402, 633, 865, 872, 1198, 1248, 1514
DpnII	GATC	8 cut(s)	304, 400, 631, 863, 870, 1196, 1246, 1512
DriI	GACNNNNNGTC	1 cut(s)	535
Eam1104I	CTCTTC	1 cut(s)	695
Eam1105I	GACNNNNNGTC	1 cut(s)	535
EarI	CTCTTC	1 cut(s)	695
Eco130I	CCWWGG	1 cut(s)	1388
Eco32I	GATATC	2 cut(s)	721, 1581
Eco47I	GGWCC	1 cut(s)	640
Eco57I	CTGAAG	5 cut(s)	306, 528, 676, 834, 1302
Eco81I	CCTNAGG	1 cut(s)	726
EcoRI	GAATTC	1 cut(s)	1008
EcoRII	CCWGG	2 cut(s)	835, 1447
EcoRV	GATATC	2 cut(s)	721, 1581
EcoT14I	CCWWGG	1 cut(s)	1388
ErhI	CCWWGG	1 cut(s)	1388
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	4 cut(s)	53, 619, 1027, 1041
FalI	AAGNNNNNCTT	2 cut(s)	800, 832
FaqI	GGGAC	2 cut(s)	385, 1059
FatI	CATG	4 cut(s)	49, 615, 1023, 1037
FbaI	TGATCA	2 cut(s)	631, 870
Fnu4HI	GCNGC	6 cut(s)	27, 189, 662, 1238, 1241, 1598
FokI	GGATG	6 cut(s)	179, 682, 1115, 1264, 1320, 1454
Fsp4HI	GCNGC	6 cut(s)	27, 189, 662, 1238, 1241, 1598
FspBI	CTAG	7 cut(s)	192, 423, 677, 783, 912, 921, 1653
GlaI	GCGC	1 cut(s)	1601
GluI	GCNGC	6 cut(s)	27, 189, 662, 1238, 1241, 1598
GsuI	CTGGAG	1 cut(s)	1431
HaeII	RGCGCY	1 cut(s)	1603
HaeIII	GGCC	1 cut(s)	1060
HgaI	GACGC	3 cut(s)	75, 146, 332
HhaI	GCGC	1 cut(s)	1602
Hin1I	GRCGYC	2 cut(s)	67, 104
Hin1II	CATG	4 cut(s)	53, 619, 1027, 1041
Hin6I	GCGC	1 cut(s)	1600
HinP1I	GCGC	1 cut(s)	1600
HindIII	AAGCTT	3 cut(s)	1499, 1527, 1586
HphI	GGTGA	6 cut(s)	610, 806, 870, 1166, 1226, 1520
Hpy166II	GTNNAC	2 cut(s)	314, 878
Hpy188III	TCNNGA	7 cut(s)	153, 233, 638, 767, 1129, 1516, 1547
Hpy8I	GTNNAC	2 cut(s)	314, 878
Hpy99I	CGWCG	3 cut(s)	69, 106, 159
HpyAV	CCTTC	2 cut(s)	1338, 1633
HpyCH4III	ACNGT	4 cut(s)	413, 592, 764, 1121
HpyCH4IV	ACGT	2 cut(s)	104, 157
HpyF10VI	GCNNNNNNNGC	3 cut(s)	670, 809, 1594
HpyF3I	CTNAG	7 cut(s)	726, 1002, 1087, 1130, 1193, 1296, 1365
HpySE526I	ACGT	2 cut(s)	104, 157
Hsp92I	GRCGYC	2 cut(s)	67, 104
Hsp92II	CATG	4 cut(s)	53, 619, 1027, 1041
HspAI	GCGC	1 cut(s)	1600
Ksp22I	TGATCA	2 cut(s)	631, 870
Kzo9I	GATC	8 cut(s)	304, 400, 631, 863, 870, 1196, 1246, 1512
LmnI	GCTCC	3 cut(s)	254, 1450, 1627
Lsp1109I	GCAGC	5 cut(s)	13, 175, 1224, 1227, 1609
LweI	GCATC	4 cut(s)	660, 1298, 1432, 1622
MaeI	CTAG	7 cut(s)	192, 423, 677, 783, 912, 921, 1653
MaeII	ACGT	2 cut(s)	104, 157
MaeIII	GTNAC	7 cut(s)	71, 78, 983, 1121, 1154, 1214, 1266
MalI	GATC	8 cut(s)	306, 402, 633, 865, 872, 1198, 1248, 1514
MbiI	CCGCTC	1 cut(s)	661
MboI	GATC	8 cut(s)	304, 400, 631, 863, 870, 1196, 1246, 1512
MboII	GAAGA	9 cut(s)	17, 146, 236, 288, 387, 682, 752, 809, 1562
MflI	RGATCY	2 cut(s)	863, 1196
MlyI	GAGTC	6 cut(s)	158, 356, 1141, 1446, 1547, 1652
MmeI	TCCRAC	1 cut(s)	678
MnlI	CCTC	8 cut(s)	245, 709, 721, 770, 1096, 1429, 1432, 1641
MroXI	GAANNNNTTC	1 cut(s)	689
MseI	TTAA	8 cut(s)	126, 513, 1031, 1167, 1317, 1422, 1466, 1614
MspR9I	CCNGG	2 cut(s)	837, 1449
Mva1269I	GAATGC	2 cut(s)	731, 1081
MvaI	CCWGG	2 cut(s)	837, 1449
MwoI	GCNNNNNNNGC	3 cut(s)	670, 809, 1594
NdeII	GATC	8 cut(s)	304, 400, 631, 863, 870, 1196, 1246, 1512
NlaIII	CATG	4 cut(s)	53, 619, 1027, 1041
NmuCI	GTSAC	5 cut(s)	983, 1121, 1154, 1214, 1266
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 1643
PctI	GAATGC	2 cut(s)	731, 1081
PdmI	GAANNNNTTC	1 cut(s)	689
PfeI	GAWTC	5 cut(s)	32, 293, 1255, 1358, 1415
PflFI	GACNNNGTC	1 cut(s)	140
PfoI	TCCNGGA	2 cut(s)	835, 1447
PkrI	GCNGC	6 cut(s)	28, 190, 663, 1239, 1242, 1599
PleI	GAGTC	6 cut(s)	157, 356, 1140, 1446, 1546, 1651
PpsI	GAGTC	6 cut(s)	157, 356, 1140, 1446, 1546, 1651
PshBI	ATTAAT	1 cut(s)	1466
PsiI	TTATAA	1 cut(s)	1708
Psp6I	CCWGG	2 cut(s)	835, 1447
PspGI	CCWGG	2 cut(s)	835, 1447
PspPI	GGNCC	2 cut(s)	640, 1058
PsuI	RGATCY	2 cut(s)	863, 1196
PsyI	GACNNNGTC	1 cut(s)	140
RsaI	GTAC	3 cut(s)	415, 781, 916
RsaNI	GTAC	3 cut(s)	414, 780, 915
SaqAI	TTAA	8 cut(s)	126, 513, 1031, 1167, 1317, 1422, 1466, 1614
SatI	GCNGC	6 cut(s)	27, 189, 662, 1238, 1241, 1598
Sau3AI	GATC	8 cut(s)	304, 400, 631, 863, 870, 1196, 1246, 1512
Sau96I	GGNCC	2 cut(s)	640, 1058
ScaI	AGTACT	1 cut(s)	916
SchI	GAGTC	6 cut(s)	158, 356, 1141, 1446, 1547, 1652
ScrFI	CCNGG	2 cut(s)	837, 1449
SfaNI	GCATC	4 cut(s)	660, 1298, 1432, 1622
SfcI	CTRYAG	2 cut(s)	1062, 1342
SinI	GGWCC	1 cut(s)	640
SpeI	ACTAGT	3 cut(s)	782, 911, 920
SsiI	CCGC	1 cut(s)	661
SspMI	CTAG	7 cut(s)	192, 423, 677, 783, 912, 921, 1653
StyD4I	CCNGG	2 cut(s)	835, 1447
StyI	CCWWGG	1 cut(s)	1388
TaaI	ACNGT	4 cut(s)	413, 592, 764, 1121
TaiI	ACGT	2 cut(s)	107, 160
TaqI	TCGA	4 cut(s)	154, 303, 1515, 1646
TatI	WGTACW	2 cut(s)	413, 914
TauI	GCSGC	1 cut(s)	664
TfiI	GAWTC	5 cut(s)	32, 293, 1255, 1358, 1415
Tru1I	TTAA	8 cut(s)	126, 513, 1031, 1167, 1317, 1422, 1466, 1614
Tru9I	TTAA	8 cut(s)	126, 513, 1031, 1167, 1317, 1422, 1466, 1614
TscAI	CASTG	2 cut(s)	1126, 1581
TseFI	GTSAC	5 cut(s)	983, 1121, 1154, 1214, 1266
TseI	GCWGC	5 cut(s)	26, 188, 1237, 1240, 1597
Tsp45I	GTSAC	5 cut(s)	983, 1121, 1154, 1214, 1266
TspDTI	ATGAA	8 cut(s)	575, 621, 921, 1040, 1119, 1268, 1506, 1539
TspGWI	ACGGA	3 cut(s)	45, 261, 1427
TspRI	CASTG	2 cut(s)	1126, 1581
Tth111I	GACNNNGTC	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	640
VspI	ATTAAT	1 cut(s)	1466
XapI	RAATTY	3 cut(s)	703, 1008, 1027
XmnI	GAANNNNTTC	1 cut(s)	689
XspI	CTAG	7 cut(s)	192, 423, 677, 783, 912, 921, 1653
ZraI	GACGTC	1 cut(s)	105
ZrmI	AGTACT	1 cut(s)	916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.