Rh2CG290900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
32884584 .. 32890359
5776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG290900.1

Sequence Viewer

Length: 1710 bp
ATGGAAGACGACATCCCCAAATTGGCTGCTGATTCCGATGAGCTTGACCATGTTCCGTTGATACGACGCCGTAACCTGTTACTGGCTACCAAGCAAAAACCGACGTCTCTCATTGATATTGCTCTTAAACAAGAAGACGCAGTCTCCGAGTCTCGACGTTTGCAGGATGTGTTTTCTTTTCCTTGTGCTGCTAGAGAAGTGGGAGTTCAATTATTGGAACAAGAAGAACATCGGGATTTTGCAACTCCCAGAGGAGCTACACCTGAACTTCCGTGCAGCAAAACTGAAGTAGATTCTTCCGTCGATCAATGTTTATATAATGACTCTTTCAGCCGATGTGTGGAAATGACTGCTATCTGCGACTCCAATGGGACAAAGTTGAATACTTTTGCTTCTTCCGATCAGATTGACTGTACTAAACCTAGCATTGGTGTTGCTCAACTAAAGAGAATTGATGTTGATAGTTGCACTCTACCTGAAAATCCTACACTATCAGAAGTTTCTGCTGAAGTTAAGGTTGCTTACCCTGACAACTTGTCAAGCTCATTTGGAGATGGAATGAATGGCTTTGCTAGTTCTCGTGTGCAGACTGTTATGGTGAAAAATGAGATCTCCATGCACTCTACTTATGATCATCTGGACCACATTGCCCTGAAAGAGCGGCAAAGGATGCTACTATCAAGGAAACTCTTCAGGTTGGAAAATTCAGTTTCGGAGGATATCCCTGAGGCATTCTCGGAAGATGTTTTGCAACAACTTGACAGTCAAGAAAAGGGAGGTACTAGTATTGTTGGTGAAGAAGCTGTAAAGGCTACCTTTCAGCCTTTTGACAATCCTGGAACAAATGCTTCAGTTCTTTGTAGATCTATGATCAGTTCACCACAACAGAATATTGCTTTCTCATCATCTACTAGTACTACTAGTCAATTTTCATTTGATGTAGCTAAATCTAAATCAAACGATTATAGGAAAAGTTCTGAAAGTGACAAGATGTGCTCATCTGAGAGAATTCCCCCTACTGCCATGAATTTAAGTCCATGTGGGGGACAAGATGATGGGCCTACACGCACAAGTAGAGTGCATTCCTCAGTCAAAATAAAGGATGAACCTTTGGACAACACTGACTTCCTGAGTCTGGGCAGATGTGTTAGGGGTGACTTCTCTCTTAACATACTTCCTATAAAGCAAGAACTTAGATCTACCAACAAAATTGGTGACGATGAGATAGACAATATGCTGCTGCGAGATCGGATGAATCTATTGGTGTCACAAGAGAACTCTGAAGTGAGTATATCTAAGAACTATGGATGCTTGGTTAAAATTGTGCCTTCTGCCGTTAGCTGTAGCCCTATTTCCGAATCTGCTAAGCCTATAAGCATTAGTCGTCCAAGGAAAAGGAAAAAGACTGCCACGGATTCTATTAAAACAGCTTTGGAGGAGGATGCTCCAGGACTCTTGCAGGTATTAATTGACAAGGGGGTATTGGTTGATGAAATCAAGCTTTATGGTGAGATCAAGAGTGATGAAGCTTTAGATGAGTCTTTTTGTGAAGATAGCTTTGCACAGCTTGAAGCAGTGATATCAAAGCTTTTCTCGCAGCGCCAGTCGTTTTTTAAGTTTGCTCCAATACGATGCACGAAGGAGTCGAGGGCTAGTTATTGCTTGGCTTGTCTAATTTCACTTGTAGAGCAGGTAATAGGTTGCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

569

Amino Acids

62.76

Weight (kDa)

4.96

Isoelectric Point (pI)

54.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1708
AatII GACGTC 1 cut(s) 107
Acc36I ACCTGC 2 cut(s) 1450, 1681
AccBSI CCGCTC 1 cut(s) 661
AciI CCGC 1 cut(s) 661
AcsI RAATTY 3 cut(s) 703, 1008, 1027
AcuI CTGAAG 5 cut(s) 306, 528, 676, 834, 1302
AcyI GRCGYC 2 cut(s) 67, 104
AfaI GTAC 3 cut(s) 415, 781, 916
AfiI CCNNNNNNNGG 6 cut(s) 22, 82, 340, 428, 1043, 1135
AgsI TTSAA 3 cut(s) 209, 382, 1571
AhdI GACNNNNNGTC 1 cut(s) 535
AhlI ACTAGT 3 cut(s) 782, 911, 920
AjnI CCWGG 2 cut(s) 835, 1447
Alw21I GWGCWC 1 cut(s) 998
Alw26I GTCTC 3 cut(s) 111, 148, 156
AoxI GGCC 1 cut(s) 1058
ApeKI GCWGC 6 cut(s) 26, 188, 276, 1237, 1240, 1597
ApoI RAATTY 3 cut(s) 703, 1008, 1027
AseI ATTAAT 1 cut(s) 1466
Asp700I GAANNNNTTC 1 cut(s) 689
AspLEI GCGC 1 cut(s) 1602
AspS9I GGNCC 2 cut(s) 640, 1058
AsuHPI GGTGA 6 cut(s) 610, 806, 870, 1166, 1226, 1520
AvaII GGWCC 1 cut(s) 640
AxyI CCTNAGG 1 cut(s) 726
BauI CACGAG 1 cut(s) 579
BbsI GAAGAC 2 cut(s) 12, 141
Bbv12I GWGCWC 1 cut(s) 998
BbvI GCAGC 6 cut(s) 13, 175, 288, 1224, 1227, 1609
BccI CCATC 2 cut(s) 548, 1049
BceAI ACGGC 2 cut(s) 54, 1319
BciT130I CCWGG 2 cut(s) 837, 1449
BclI TGATCA 2 cut(s) 631, 870
BcoDI GTCTC 3 cut(s) 111, 148, 156
BcuI ACTAGT 3 cut(s) 782, 911, 920
BfaI CTAG 7 cut(s) 192, 423, 573, 783, 912, 921, 1653
BfmI CTRYAG 1 cut(s) 1342
BfoI RGCGCY 1 cut(s) 1603
BfuAI ACCTGC 2 cut(s) 1450, 1681
BglII AGATCT 3 cut(s) 609, 863, 1196
BisI GCNGC 7 cut(s) 27, 189, 277, 662, 1238, 1241, 1598
BlpI GCTNAGC 1 cut(s) 1365
BlsI GCNGC 7 cut(s) 28, 190, 278, 663, 1239, 1242, 1599
BmcAI AGTACT 1 cut(s) 916
Bme1390I CCNGG 2 cut(s) 837, 1449
Bme18I GGWCC 1 cut(s) 640
BmeRI GACNNNNNGTC 1 cut(s) 535
BmgT120I GGNCC 2 cut(s) 640, 1058
BmrFI CCNGG 2 cut(s) 837, 1449
BmsI GCATC 4 cut(s) 660, 1298, 1432, 1622
BpiI GAAGAC 2 cut(s) 12, 141
BplI GAGNNNNNCTC 2 cut(s) 719, 751
BpmI CTGGAG 1 cut(s) 1431
Bpu1102I GCTNAGC 1 cut(s) 1365
BsaHI GRCGYC 2 cut(s) 67, 104
BsaJI CCNNGG 2 cut(s) 1388, 1410
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 6 cut(s) 22, 82, 340, 428, 1043, 1135
Bse1I ACTGG 2 cut(s) 87, 1603
Bse21I CCTNAGG 1 cut(s) 726
Bse3DI GCAATG 1 cut(s) 645
BseBI CCWGG 2 cut(s) 837, 1449
BseDI CCNNGG 2 cut(s) 1388, 1410
BseGI GGATG 7 cut(s) 12, 172, 675, 1108, 1257, 1313, 1447
BseLI CCNNNNNNNGG 6 cut(s) 22, 82, 340, 428, 1043, 1135
BseMI GCAATG 1 cut(s) 645
BseMII CTCAG 4 cut(s) 717, 993, 1101, 1121
BseNI ACTGG 2 cut(s) 87, 1603
BseRI GAGGAG 2 cut(s) 267, 1451
BseXI GCAGC 6 cut(s) 13, 175, 288, 1224, 1227, 1609
BsgI GTGCAG 2 cut(s) 295, 605
BshFI GGCC 1 cut(s) 1060
BsiHKAI GWGCWC 1 cut(s) 998
BslFI GGGAC 2 cut(s) 385, 1059
BslI CCNNNNNNNGG 6 cut(s) 22, 82, 340, 428, 1043, 1135
BsmAI GTCTC 3 cut(s) 111, 148, 156
BsmBI CGTCTC 1 cut(s) 111
BsmFI GGGAC 2 cut(s) 385, 1059
BsmI GAATGC 2 cut(s) 731, 1081
BsnI GGCC 1 cut(s) 1060
Bsp1286I GDGCHC 1 cut(s) 998
Bsp143I GATC 9 cut(s) 304, 400, 609, 631, 863, 870, 1196, 1246, 1512
Bsp1720I GCTNAGC 1 cut(s) 1365
BspACI CCGC 1 cut(s) 661
BspANI GGCC 1 cut(s) 1060
BspCNI CTCAG 4 cut(s) 718, 994, 1100, 1122
BspMI ACCTGC 2 cut(s) 1450, 1681
BsrBI CCGCTC 1 cut(s) 661
BsrDI GCAATG 1 cut(s) 645
BsrI ACTGG 2 cut(s) 87, 1603
BssECI CCNNGG 2 cut(s) 1388, 1410
BssMI GATC 9 cut(s) 304, 400, 609, 631, 863, 870, 1196, 1246, 1512
BssNI GRCGYC 2 cut(s) 67, 104
BssSI CACGAG 1 cut(s) 579
BssT1I CCWWGG 1 cut(s) 1388
Bst2BI CACGAG 1 cut(s) 579
Bst2UI CCWGG 2 cut(s) 837, 1449
Bst4CI ACNGT 3 cut(s) 413, 592, 764
Bst6I CTCTTC 1 cut(s) 695
BstACI GRCGYC 2 cut(s) 67, 104
BstAPI GCANNNNNTGC 1 cut(s) 670
BstDEI CTNAG 7 cut(s) 726, 1002, 1087, 1130, 1193, 1296, 1365
BstDSI CCRYGG 1 cut(s) 1410
BstF5I GGATG 7 cut(s) 12, 172, 675, 1108, 1257, 1313, 1447
BstH2I RGCGCY 1 cut(s) 1603
BstHHI GCGC 1 cut(s) 1602
BstKTI GATC 9 cut(s) 307, 403, 612, 634, 866, 873, 1199, 1249, 1515
BstMAI GTCTC 3 cut(s) 111, 148, 156
BstMBI GATC 9 cut(s) 304, 400, 609, 631, 863, 870, 1196, 1246, 1512
BstMWI GCNNNNNNNGC 3 cut(s) 670, 809, 1594
BstNI CCWGG 2 cut(s) 837, 1449
BstSCI CCNGG 2 cut(s) 835, 1447
BstSFI CTRYAG 1 cut(s) 1342
BstV1I GCAGC 6 cut(s) 13, 175, 288, 1224, 1227, 1609
BstV2I GAAGAC 2 cut(s) 12, 141
BstX2I RGATCY 3 cut(s) 609, 863, 1196
BstYI RGATCY 3 cut(s) 609, 863, 1196
Bsu36I CCTNAGG 1 cut(s) 726
BsuRI GGCC 1 cut(s) 1060
BtgI CCRYGG 1 cut(s) 1410
BtsCI GGATG 7 cut(s) 12, 172, 675, 1108, 1257, 1313, 1447
BtsI GCAGTG 1 cut(s) 1581
BtsIMutI CAGTG 2 cut(s) 1119, 1581
BveI ACCTGC 2 cut(s) 1450, 1681
CfoI GCGC 1 cut(s) 1602
Cfr13I GGNCC 2 cut(s) 640, 1058
CseI GACGC 2 cut(s) 75, 146
Csp6I GTAC 3 cut(s) 414, 780, 915
CviAII CATG 4 cut(s) 50, 616, 1024, 1038
CviQI GTAC 3 cut(s) 414, 780, 915
DdeI CTNAG 7 cut(s) 726, 1002, 1087, 1130, 1193, 1296, 1365
DpnI GATC 9 cut(s) 306, 402, 611, 633, 865, 872, 1198, 1248, 1514
DpnII GATC 9 cut(s) 304, 400, 609, 631, 863, 870, 1196, 1246, 1512
DriI GACNNNNNGTC 1 cut(s) 535
Eam1104I CTCTTC 1 cut(s) 695
Eam1105I GACNNNNNGTC 1 cut(s) 535
EarI CTCTTC 1 cut(s) 695
Eco130I CCWWGG 1 cut(s) 1388
Eco32I GATATC 2 cut(s) 721, 1581
Eco47I GGWCC 1 cut(s) 640
Eco57I CTGAAG 5 cut(s) 306, 528, 676, 834, 1302
Eco81I CCTNAGG 1 cut(s) 726
EcoRI GAATTC 1 cut(s) 1008
EcoRII CCWGG 2 cut(s) 835, 1447
EcoRV GATATC 2 cut(s) 721, 1581
EcoT14I CCWWGG 1 cut(s) 1388
ErhI CCWWGG 1 cut(s) 1388
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 4 cut(s) 53, 619, 1027, 1041
FalI AAGNNNNNCTT 2 cut(s) 800, 832
FaqI GGGAC 2 cut(s) 385, 1059
FatI CATG 4 cut(s) 49, 615, 1023, 1037
FbaI TGATCA 2 cut(s) 631, 870
Fnu4HI GCNGC 7 cut(s) 27, 189, 277, 662, 1238, 1241, 1598
FokI GGATG 6 cut(s) 179, 682, 1115, 1264, 1320, 1454
Fsp4HI GCNGC 7 cut(s) 27, 189, 277, 662, 1238, 1241, 1598
FspBI CTAG 7 cut(s) 192, 423, 573, 783, 912, 921, 1653
GlaI GCGC 1 cut(s) 1601
GluI GCNGC 7 cut(s) 27, 189, 277, 662, 1238, 1241, 1598
GsuI CTGGAG 1 cut(s) 1431
HaeII RGCGCY 1 cut(s) 1603
HaeIII GGCC 1 cut(s) 1060
HgaI GACGC 2 cut(s) 75, 146
HhaI GCGC 1 cut(s) 1602
Hin1I GRCGYC 2 cut(s) 67, 104
Hin1II CATG 4 cut(s) 53, 619, 1027, 1041
Hin6I GCGC 1 cut(s) 1600
HinP1I GCGC 1 cut(s) 1600
HindIII AAGCTT 3 cut(s) 1499, 1527, 1586
HphI GGTGA 6 cut(s) 610, 806, 870, 1166, 1226, 1520
Hpy166II GTNNAC 1 cut(s) 878
Hpy188III TCNNGA 6 cut(s) 153, 233, 638, 767, 1129, 1516
Hpy8I GTNNAC 1 cut(s) 878
Hpy99I CGWCG 4 cut(s) 69, 106, 159, 305
HpyAV CCTTC 2 cut(s) 1338, 1633
HpyCH4III ACNGT 3 cut(s) 413, 592, 764
HpyCH4IV ACGT 2 cut(s) 104, 157
HpyF10VI GCNNNNNNNGC 3 cut(s) 670, 809, 1594
HpyF3I CTNAG 7 cut(s) 726, 1002, 1087, 1130, 1193, 1296, 1365
HpySE526I ACGT 2 cut(s) 104, 157
Hsp92I GRCGYC 2 cut(s) 67, 104
Hsp92II CATG 4 cut(s) 53, 619, 1027, 1041
HspAI GCGC 1 cut(s) 1600
Ksp22I TGATCA 2 cut(s) 631, 870
Kzo9I GATC 9 cut(s) 304, 400, 609, 631, 863, 870, 1196, 1246, 1512
LmnI GCTCC 3 cut(s) 254, 1450, 1627
Lsp1109I GCAGC 6 cut(s) 13, 175, 288, 1224, 1227, 1609
LweI GCATC 4 cut(s) 660, 1298, 1432, 1622
MaeI CTAG 7 cut(s) 192, 423, 573, 783, 912, 921, 1653
MaeII ACGT 2 cut(s) 104, 157
MaeIII GTNAC 6 cut(s) 71, 78, 983, 1154, 1214, 1266
MalI GATC 9 cut(s) 306, 402, 611, 633, 865, 872, 1198, 1248, 1514
MbiI CCGCTC 1 cut(s) 661
MboI GATC 9 cut(s) 304, 400, 609, 631, 863, 870, 1196, 1246, 1512
MboII GAAGA 9 cut(s) 17, 146, 236, 288, 387, 682, 752, 809, 1562
MflI RGATCY 3 cut(s) 609, 863, 1196
MhlI GDGCHC 1 cut(s) 998
MlyI GAGTC 7 cut(s) 158, 317, 356, 1141, 1446, 1547, 1652
MmeI TCCRAC 1 cut(s) 678
MnlI CCTC 8 cut(s) 245, 709, 721, 770, 1096, 1429, 1432, 1641
MroXI GAANNNNTTC 1 cut(s) 689
MseI TTAA 8 cut(s) 126, 513, 1031, 1167, 1317, 1422, 1466, 1614
MspR9I CCNGG 2 cut(s) 837, 1449
Mva1269I GAATGC 2 cut(s) 731, 1081
MvaI CCWGG 2 cut(s) 837, 1449
MwoI GCNNNNNNNGC 3 cut(s) 670, 809, 1594
NdeII GATC 9 cut(s) 304, 400, 609, 631, 863, 870, 1196, 1246, 1512
NlaIII CATG 4 cut(s) 53, 619, 1027, 1041
NmuCI GTSAC 4 cut(s) 983, 1154, 1214, 1266
PcsI WCGNNNNNNNCGW 2 cut(s) 144, 1643
PctI GAATGC 2 cut(s) 731, 1081
PdmI GAANNNNTTC 1 cut(s) 689
PfeI GAWTC 5 cut(s) 32, 293, 1255, 1358, 1415
PflFI GACNNNGTC 1 cut(s) 140
PfoI TCCNGGA 2 cut(s) 835, 1447
PkrI GCNGC 7 cut(s) 28, 190, 278, 663, 1239, 1242, 1599
PleI GAGTC 7 cut(s) 157, 317, 356, 1140, 1446, 1546, 1651
PpsI GAGTC 7 cut(s) 157, 317, 356, 1140, 1446, 1546, 1651
PshBI ATTAAT 1 cut(s) 1466
PsiI TTATAA 1 cut(s) 1708
Psp6I CCWGG 2 cut(s) 835, 1447
PspGI CCWGG 2 cut(s) 835, 1447
PspPI GGNCC 2 cut(s) 640, 1058
PsuI RGATCY 3 cut(s) 609, 863, 1196
PsyI GACNNNGTC 1 cut(s) 140
RsaI GTAC 3 cut(s) 415, 781, 916
RsaNI GTAC 3 cut(s) 414, 780, 915
SaqAI TTAA 8 cut(s) 126, 513, 1031, 1167, 1317, 1422, 1466, 1614
SatI GCNGC 7 cut(s) 27, 189, 277, 662, 1238, 1241, 1598
Sau3AI GATC 9 cut(s) 304, 400, 609, 631, 863, 870, 1196, 1246, 1512
Sau96I GGNCC 2 cut(s) 640, 1058
ScaI AGTACT 1 cut(s) 916
SchI GAGTC 7 cut(s) 158, 317, 356, 1141, 1446, 1547, 1652
ScrFI CCNGG 2 cut(s) 837, 1449
SduI GDGCHC 1 cut(s) 998
SfaNI GCATC 4 cut(s) 660, 1298, 1432, 1622
SfcI CTRYAG 1 cut(s) 1342
SinI GGWCC 1 cut(s) 640
SpeI ACTAGT 3 cut(s) 782, 911, 920
SsiI CCGC 1 cut(s) 661
SspI AATATT 1 cut(s) 892
SspMI CTAG 7 cut(s) 192, 423, 573, 783, 912, 921, 1653
StyD4I CCNGG 2 cut(s) 835, 1447
StyI CCWWGG 1 cut(s) 1388
TaaI ACNGT 3 cut(s) 413, 592, 764
TaiI ACGT 2 cut(s) 107, 160
TaqI TCGA 3 cut(s) 154, 303, 1646
TatI WGTACW 2 cut(s) 413, 914
TauI GCSGC 1 cut(s) 664
TfiI GAWTC 5 cut(s) 32, 293, 1255, 1358, 1415
Tru1I TTAA 8 cut(s) 126, 513, 1031, 1167, 1317, 1422, 1466, 1614
Tru9I TTAA 8 cut(s) 126, 513, 1031, 1167, 1317, 1422, 1466, 1614
TscAI CASTG 2 cut(s) 1126, 1581
TseFI GTSAC 4 cut(s) 983, 1154, 1214, 1266
TseI GCWGC 6 cut(s) 26, 188, 276, 1237, 1240, 1597
Tsp45I GTSAC 4 cut(s) 983, 1154, 1214, 1266
TspDTI ATGAA 7 cut(s) 575, 921, 1040, 1119, 1268, 1506, 1539
TspGWI ACGGA 4 cut(s) 45, 261, 289, 1427
TspRI CASTG 2 cut(s) 1126, 1581
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 640
VspI ATTAAT 1 cut(s) 1466
XapI RAATTY 3 cut(s) 703, 1008, 1027
XmnI GAANNNNTTC 1 cut(s) 689
XspI CTAG 7 cut(s) 192, 423, 573, 783, 912, 921, 1653
ZraI GACGTC 1 cut(s) 105
ZrmI AGTACT 1 cut(s) 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.