Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010233

Physical Location & Seq

Genomic Coordinates Reverse (-)

8750242 .. 8754393

Gene Structure 4152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGAGAATGATAACGCCAAATTGGGGTCTGCCGGCGGACTCAAATCCGACAACAACAACAGCGTCAGCGAACAAGAACAAAACCCCTTGAGAGAATTCGAAGAAGGAGAAGGAGAAGAAGAAGTAAGCAGTGGGCCTTCGCAGGAAGAGGAGGTGGATCCTCCCTCCTCACCTCCTGTTCCTCAACCTTCAAGAACTCCCTTCAGTAATCTCAGTCAGGTCGATGCTGACCTAGCCCTTGCTCGAACCCTCCAAGAACAGGAAAGGGCATACATGATGCTACGGATGAACAATGAAGGCAGTGATTATGGAAGTTGGGAAGCTGGAAGTTATGTGCATGAGGATGATTTCAATGAATTTGACGACGATACTGATGATAATGATGGTGAGGAACAAGATGATGGAACTGAGGTTGACAATGATGAAGATGCATTTGATGTGCATGCTCATGATGATGCTGGAGAGAATGATAACCCCAGTGTCGAATATGATCCGGCTGTTTTTTCAAGCGACGAGGCCTATGCAAGAGCCCTGCAGGATGCTGAAGATAGAGAGATGGCTAGACTGATGGCACTTGCTGGGATTAATGATCGCGAAGTTGAGGACACAGAGGAACATGGTGGTAACTCTCAGGATACATGGGATGAGGTTGACCCTGATGAACTTTCATATGAGGAGTTACTTGCATTGAGTGAAGTTGTTGGAACTGAGAGCAGAGGGCTTTCAGCTGATAATATCGCCTCATTGCCTTCAGTAAGCTACAAGACAGGAAATAGTCAGAATGGGAGCAATGAGTCGTGTGTTATTTGTCGGTTGGACTACGAGGATGGTGAAAACTTGACATTACTCTCTTGCAAACATTCCTATCATTCTGAGTGCATAAACAATTGGTTGAAAATTAACAAGGTCTGCCCTTTTTGCAGTGCCGAAGTTTCCACATCTGCAAACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0051865 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

318

Amino Acids

34.91

Weight (kDa)

4.05

Isoelectric Point (pI)

51.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	260 - 307	9.3e-10	RING-H2 zinc finger domain
zf-RING_2	PF13639	266 - 307	7.2e-13	Ring finger domain
zf-RING_11	PF17123	267 - 294	1.3e-07	RING-like zinc finger
zf-C3HC4_2	PF13923	267 - 307	1.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	267 - 307	4.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	267 - 308	1.4e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19910 AT3G19910
fragaria_vesca	FvH4_1g00010
malus_domestica	MD00G1145000.v1.1 MD15G1141500.v1.1
prunus_persica	Prupe.7G271700_v2.0.a1 Prupe.7G271700_v2.0.a1 Prupe.7G271700_v2.0.a1
pyrus_communis	pycom15g12780 pycom290g00050
rosa_chinensis	RchiOBHm_Chr2g0084221
rosa_laevigata	RLG00000015601
rosa_multiflora	Rmu_sc0003129.1_g000024
rosa_roxburghii	Rroxscaffold_2G00156230
rosa_rugosa	Rorug01G0451900 Rorug01G0451900
rosa_samantha	Rh2AG000200 Rh2BG000100 Rh2CG000100 Rh2DG000200
rosa_wichuraiana	Rw2G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	594
AciI	CCGC	1 cut(s)	36
AclWI	GGATC	3 cut(s)	152, 165, 485
AcsI	RAATTY	2 cut(s)	95, 356
AcuI	CTGAAG	3 cut(s)	187, 564, 735
AfiI	CCNNNNNNNGG	2 cut(s)	24, 259
AgsI	TTSAA	4 cut(s)	192, 352, 507, 895
AluBI	AGCT	3 cut(s)	323, 728, 759
AluI	AGCT	3 cut(s)	323, 728, 759
AlwI	GGATC	3 cut(s)	152, 165, 485
AoxI	GGCC	2 cut(s)	134, 516
ApoI	RAATTY	2 cut(s)	95, 356
AseI	ATTAAT	1 cut(s)	585
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	3 cut(s)	162, 398, 842
AsuII	TTCGAA	1 cut(s)	99
BamHI	GGATCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	532
BccI	CCATC	5 cut(s)	377, 395, 550, 562, 821
BcgI	CGANNNNNNTGC	2 cut(s)	503, 537
BciVI	GTATCC	1 cut(s)	628
BfaI	CTAG	2 cut(s)	233, 561
BfmI	CTRYAG	1 cut(s)	533
BfuI	GTATCC	1 cut(s)	628
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	159
BmrI	ACTGGG	1 cut(s)	471
BmsI	GCATC	5 cut(s)	214, 267, 418, 445, 529
BmuI	ACTGGG	1 cut(s)	471
BpmI	CTGGAG	1 cut(s)	480
Bpu14I	TTCGAA	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 259
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	477
Bse3DI	GCAATG	2 cut(s)	743, 796
BseGI	GGATG	5 cut(s)	291, 349, 544, 649, 832
BseLI	CCNNNNNNNGG	2 cut(s)	24, 259
BseMI	GCAATG	2 cut(s)	743, 796
BseMII	CTCAG	5 cut(s)	226, 399, 644, 699, 864
BseNI	ACTGG	1 cut(s)	477
BseRI	GAGGAG	3 cut(s)	157, 164, 689
BseYI	CCCAGC	1 cut(s)	578
Bsh1236I	CGCG	1 cut(s)	594
BshFI	GGCC	2 cut(s)	136, 518
BsiSI	CCGG	2 cut(s)	33, 494
BslI	CCNNNNNNNGG	2 cut(s)	24, 259
BsnI	GGCC	2 cut(s)	136, 518
Bsp119I	TTCGAA	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp143I	GATC	3 cut(s)	157, 490, 589
Bsp68I	TCGCGA	1 cut(s)	594
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	2 cut(s)	136, 518
BspCNI	CTCAG	5 cut(s)	225, 400, 643, 700, 865
BspFNI	CGCG	1 cut(s)	594
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	1 cut(s)	159
BspMAI	CTGCAG	1 cut(s)	537
BspPI	GGATC	3 cut(s)	152, 165, 485
BspT104I	TTCGAA	1 cut(s)	99
BsrDI	GCAATG	2 cut(s)	743, 796
BsrFI	RCCGGY	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	477
BssAI	RCCGGY	1 cut(s)	32
BssMI	GATC	3 cut(s)	157, 490, 589
Bst6I	CTCTTC	1 cut(s)	141
BstBI	TTCGAA	1 cut(s)	99
BstC8I	GCNNGC	2 cut(s)	34, 444
BstDEI	CTNAG	5 cut(s)	212, 408, 630, 708, 873
BstF5I	GGATG	5 cut(s)	291, 349, 544, 649, 832
BstFNI	CGCG	1 cut(s)	594
BstKTI	GATC	3 cut(s)	160, 493, 592
BstMBI	GATC	3 cut(s)	157, 490, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 918
BstNSI	RCATGY	1 cut(s)	446
BstSFI	CTRYAG	1 cut(s)	533
BstUI	CGCG	1 cut(s)	594
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuI	GTATCC	1 cut(s)	628
BsuRI	GGCC	2 cut(s)	136, 518
BtsCI	GGATG	5 cut(s)	291, 349, 544, 649, 832
BtsI	GCAGTG	3 cut(s)	136, 307, 928
BtsIMutI	CAGTG	4 cut(s)	136, 307, 484, 928
BtuMI	TCGCGA	1 cut(s)	594
Cac8I	GCNNGC	2 cut(s)	34, 444
CciI	TCATGA	1 cut(s)	448
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	134
CseI	GACGC	1 cut(s)	52
CviAII	CATG	6 cut(s)	274, 338, 443, 449, 617, 639
DdeI	CTNAG	5 cut(s)	212, 408, 630, 708, 873
DpnI	GATC	3 cut(s)	159, 492, 591
DpnII	GATC	3 cut(s)	157, 490, 589
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
EciI	GGCGGA	1 cut(s)	51
Eco147I	AGGCCT	1 cut(s)	518
Eco24I	GRGCYC	1 cut(s)	532
Eco57I	CTGAAG	3 cut(s)	187, 564, 735
EcoRI	GAATTC	1 cut(s)	95
EcoT22I	ATGCAT	1 cut(s)	433
EcoT38I	GRGCYC	1 cut(s)	532
FaeI	CATG	6 cut(s)	277, 341, 446, 452, 620, 642
FatI	CATG	6 cut(s)	273, 337, 442, 448, 616, 638
FauNDI	CATATG	1 cut(s)	670
FokI	GGATG	5 cut(s)	298, 356, 551, 656, 839
FriOI	GRGCYC	1 cut(s)	532
FspBI	CTAG	2 cut(s)	233, 561
GsaI	CCCAGC	1 cut(s)	582
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	2 cut(s)	136, 518
HapII	CCGG	2 cut(s)	33, 494
HgaI	GACGC	1 cut(s)	52
Hin1II	CATG	6 cut(s)	277, 341, 446, 452, 620, 642
HincII	GTYRAC	2 cut(s)	415, 652
HindII	GTYRAC	2 cut(s)	415, 652
HinfI	GANTC	2 cut(s)	39, 794
HpaII	CCGG	2 cut(s)	33, 494
HphI	GGTGA	3 cut(s)	162, 398, 842
Hpy166II	GTNNAC	2 cut(s)	415, 652
Hpy188I	TCNGA	3 cut(s)	49, 780, 874
Hpy188III	TCNNGA	4 cut(s)	192, 449, 593, 632
Hpy8I	GTNNAC	2 cut(s)	415, 652
Hpy99I	CGWCG	2 cut(s)	368, 515
HpyAV	CCTTC	7 cut(s)	98, 104, 147, 198, 211, 290, 759
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 918
HpyF3I	CTNAG	5 cut(s)	212, 408, 630, 708, 873
Hsp92II	CATG	6 cut(s)	277, 341, 446, 452, 620, 642
KroI	GCCGGC	1 cut(s)	32
KroNI	GCCGGC	1 cut(s)	34
Kzo9I	GATC	3 cut(s)	157, 490, 589
LmnI	GCTCC	1 cut(s)	786
LweI	GCATC	5 cut(s)	214, 267, 418, 445, 529
MaeI	CTAG	2 cut(s)	233, 561
MaeIII	GTNAC	2 cut(s)	623, 678
MalI	GATC	3 cut(s)	159, 492, 591
MboI	GATC	3 cut(s)	157, 490, 589
MboII	GAAGA	6 cut(s)	113, 128, 131, 158, 437, 557
MfeI	CAATTG	1 cut(s)	886
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	532
MluCI	AATT	5 cut(s)	20, 95, 356, 886, 897
MlyI	GAGTC	2 cut(s)	33, 803
MmeI	TCCRAC	3 cut(s)	72, 682, 795
Mph1103I	ATGCAT	1 cut(s)	433
MroNI	GCCGGC	1 cut(s)	32
MseI	TTAA	2 cut(s)	585, 900
MslI	CAYNNNNRTG	3 cut(s)	342, 447, 453
MspA1I	CMGCKG	1 cut(s)	728
MspI	CCGG	2 cut(s)	33, 494
MunI	CAATTG	1 cut(s)	886
MvnI	CGCG	1 cut(s)	594
MwoI	GCNNNNNNNGC	2 cut(s)	233, 918
NaeI	GCCGGC	1 cut(s)	34
NdeI	CATATG	1 cut(s)	670
NdeII	GATC	3 cut(s)	157, 490, 589
NgoMIV	GCCGGC	1 cut(s)	32
NlaIII	CATG	6 cut(s)	277, 341, 446, 452, 620, 642
NlaIV	GGNNCC	1 cut(s)	159
NruI	TCGCGA	1 cut(s)	594
NsiI	ATGCAT	1 cut(s)	433
NspI	RCATGY	1 cut(s)	446
NspV	TTCGAA	1 cut(s)	99
PaeI	GCATGC	1 cut(s)	446
PagI	TCATGA	1 cut(s)	448
PceI	AGGCCT	1 cut(s)	518
PdiI	GCCGGC	1 cut(s)	34
PleI	GAGTC	2 cut(s)	33, 802
PpsI	GAGTC	2 cut(s)	33, 802
PshBI	ATTAAT	1 cut(s)	585
PspFI	CCCAGC	1 cut(s)	578
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	134
PstI	CTGCAG	1 cut(s)	537
PsuI	RGATCY	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	728
RruI	TCGCGA	1 cut(s)	594
RseI	CAYNNNNRTG	3 cut(s)	342, 447, 453
SaqAI	TTAA	2 cut(s)	585, 900
Sau3AI	GATC	3 cut(s)	157, 490, 589
Sau96I	GGNCC	1 cut(s)	134
SbfI	CCTGCAGG	1 cut(s)	537
SchI	GAGTC	2 cut(s)	33, 803
SdaI	CCTGCAGG	1 cut(s)	537
SduI	GDGCHC	1 cut(s)	532
SfaNI	GCATC	5 cut(s)	214, 267, 418, 445, 529
SfcI	CTRYAG	1 cut(s)	533
SfuI	TTCGAA	1 cut(s)	99
SmiMI	CAYNNNNRTG	3 cut(s)	342, 447, 453
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
SphI	GCATGC	1 cut(s)	446
Sse8387I	CCTGCAGG	1 cut(s)	537
Sse9I	AATT	5 cut(s)	20, 95, 356, 886, 897
SseBI	AGGCCT	1 cut(s)	518
SsiI	CCGC	1 cut(s)	36
SspMI	CTAG	2 cut(s)	233, 561
StuI	AGGCCT	1 cut(s)	518
TaqI	TCGA	4 cut(s)	99, 222, 244, 483
TasI	AATT	5 cut(s)	20, 95, 356, 886, 897
Tru1I	TTAA	2 cut(s)	585, 900
Tru9I	TTAA	2 cut(s)	585, 900
TscAI	CASTG	4 cut(s)	136, 307, 484, 928
TspDTI	ATGAA	6 cut(s)	302, 309, 369, 438, 657, 675
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	4 cut(s)	136, 307, 484, 928
VspI	ATTAAT	1 cut(s)	585
XapI	RAATTY	2 cut(s)	95, 356
XceI	RCATGY	1 cut(s)	446
XspI	CTAG	2 cut(s)	233, 561
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.