Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009864

Physical Location & Seq

Genomic Coordinates Reverse (-)

8979766 .. 8982282

Gene Structure 2517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g13110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGTTGCTCTGCAAAGAAATTTAAGCAAGTTTGGGATCAGAGAAGTTGCCAGAACCGGAAAGATTGCCTTGAGGAGGGAAAAATTGGTTGCATCTGCTCCATTTTGGCGATATTCAGCAGCTTCATATCCTGATCTTGAGAGAACAGTTCCTGTTGATGCTCTTGTAGGGGTTGAAAACGGATTAGTTAATGCTGAATCTGATGTGTCTTCTGAGGGTGATGTTTATCCTGTGGAGCCGTCTGATACCTTTACTGTCAAACAAGTTCTTGATGCTCACTGGGGTGTTCTCAATGATGAAGATACCAATGGACTTCGATCGCACACTTTATCCATGCTTGTAAATGATGTTCCTGGGGTTCTCTACATTCTTACTGGCGTTTTTGCTCGAAGGGGTTATAACATTCAGAGTTTAGCTGTTGGCCGTGCGGAAGTTGAGGGGCAATCTCGCATTACTACTGTTGTTCCCGGTACAGATGAATCAATTAGCAAGTTGGTGCAGCAGCTTTACAAGCTTGTCGATATTCATAATGTTCAAGATCTTACCAATTTGCCATTTGCTGAGCGGGAACTGATGTTGATAAAAATTGCTGCAGATGCTGTCGCTCGAAGAGATGTACTTGATATTGGCAAGATTTTTAGGGCCAAGGCTGTGGACGTTTCTGACCACACAATAACCCTTGAGCTTACGGGAGACATAAACAAGATGGTTGCATTGCAGAGATTGTTGGAGCCCTATGGAATTTGTGAGGTGGCGCGTACTGGACGAATTGCATTGGTGCGTGAGTCGGGTGTGGATTCGAAACACCTCCGTGGATATTCTTTGCCTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003984 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005948 GO:0006082 GO:0006520 GO:0006549 GO:0006573 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009097 GO:0009099 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016740 GO:0016744 GO:0019752 GO:0032991 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

ACT ACT_5 ALS_ss_C

Protein Analysis

278

Amino Acids

30.49

Weight (kDa)

5.8

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACT	PF01842	108 - 172	3.1e-09	ACT domain
ACT_AHAS_ss	PF22629	110 - 176	1.4e-20	AHAS small subunit-like ACT domain
ACT_5	PF13710	117 - 178	1.4e-10	ACT domain
ALS_ss_C	PF10369	189 - 261	1.3e-26	Small subunit of acetolactate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31810 AT2G31810 AT2G31810
fragaria_vesca	FvH4_1g00350 FvH4_1g00350
malus_domestica	MD02G1002700.v1.1 MD15G1145900.v1.1
prunus_persica	Prupe.7G268500_v2.0.a1
pyrus_communis	pycom15g13110
rosa_chinensis	RchiOBHm_Chr2g0084781
rosa_laevigata	RLG00000015638
rosa_multiflora	Rmu_sc0002352.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155820
rosa_rugosa	Rorug01G0456000 Rorug01G0456100 Rorug01G0456200
rosa_samantha	Rh2AG003300 Rh2BG004900 Rh2CG005300 Rh2DG004700
rosa_wichuraiana	Rw2G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	399
AccBSI	CCGCTC	1 cut(s)	565
AccII	CGCG	1 cut(s)	757
AciI	CCGC	2 cut(s)	428, 565
AclWI	GGATC	1 cut(s)	44
AcoI	YGGCCR	1 cut(s)	421
AcsI	RAATTY	2 cut(s)	19, 741
AfaI	GTAC	3 cut(s)	472, 618, 760
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	2 cut(s)	176, 536
AjnI	CCWGG	1 cut(s)	352
AleI	CACNNNNGTG	2 cut(s)	282, 810
AluBI	AGCT	5 cut(s)	122, 416, 505, 514, 685
AluI	AGCT	5 cut(s)	122, 416, 505, 514, 685
Alw26I	GTCTC	1 cut(s)	687
AlwI	GGATC	1 cut(s)	44
AlwNI	CAGNNNCTG	2 cut(s)	152, 599
AoxI	GGCC	2 cut(s)	421, 642
ApeKI	GCWGC	4 cut(s)	119, 499, 502, 590
ApoI	RAATTY	2 cut(s)	19, 741
AspLEI	GCGC	1 cut(s)	757
AspS9I	GGNCC	1 cut(s)	642
AsuC2I	CCSGG	1 cut(s)	468
AsuHPI	GGTGA	1 cut(s)	230
AsuII	TTCGAA	1 cut(s)	800
BanII	GRGCYC	1 cut(s)	735
BbsI	GAAGAC	1 cut(s)	201
BbvI	GCAGC	4 cut(s)	131, 511, 514, 577
BccI	CCATC	1 cut(s)	700
BceAI	ACGGC	2 cut(s)	223, 408
BciT130I	CCWGG	1 cut(s)	354
BcnI	CCSGG	1 cut(s)	468
BcoDI	GTCTC	1 cut(s)	687
BfmI	CTRYAG	2 cut(s)	591, 830
BglII	AGATCT	1 cut(s)	538
BisI	GCNGC	4 cut(s)	120, 500, 503, 591
BlpI	GCTNAGC	1 cut(s)	561
BlsI	GCNGC	4 cut(s)	121, 501, 504, 592
Bme1390I	CCNGG	2 cut(s)	354, 468
BmgT120I	GGNCC	1 cut(s)	642
BmiI	GGNNCC	2 cut(s)	237, 732
BmrFI	CCNGG	2 cut(s)	354, 468
BmrI	ACTGGG	1 cut(s)	289
BmsI	GCATC	4 cut(s)	101, 148, 262, 586
BmuI	ACTGGG	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	201
Bpu1102I	GCTNAGC	1 cut(s)	561
Bpu14I	TTCGAA	1 cut(s)	800
BpuEI	CTTGAG	3 cut(s)	91, 158, 701
BpuMI	CCSGG	1 cut(s)	468
BsaBI	GATNNNNATC	1 cut(s)	225
BsaJI	CCNNGG	3 cut(s)	353, 645, 811
BsaWI	WCCGGW	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse1I	ACTGG	3 cut(s)	284, 379, 766
Bse3DI	GCAATG	1 cut(s)	713
Bse8I	GATNNNNATC	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	3 cut(s)	353, 645, 811
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMI	GCAATG	1 cut(s)	713
BseMII	CTCAG	2 cut(s)	204, 552
BseNI	ACTGG	3 cut(s)	284, 379, 766
BseRI	GAGGAG	1 cut(s)	88
BseXI	GCAGC	4 cut(s)	131, 511, 514, 577
BsgI	GTGCAG	1 cut(s)	518
Bsh1236I	CGCG	1 cut(s)	757
Bsh1285I	CGRYCG	1 cut(s)	320
BshFI	GGCC	2 cut(s)	423, 644
BsiEI	CGRYCG	1 cut(s)	320
BsiSI	CCGG	2 cut(s)	57, 468
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	687
BsnI	GGCC	2 cut(s)	423, 644
Bsp119I	TTCGAA	1 cut(s)	800
Bsp1286I	GDGCHC	1 cut(s)	735
Bsp143I	GATC	4 cut(s)	36, 133, 317, 538
Bsp1720I	GCTNAGC	1 cut(s)	561
BspACI	CCGC	2 cut(s)	428, 565
BspANI	GGCC	2 cut(s)	423, 644
BspCNI	CTCAG	2 cut(s)	205, 553
BspFNI	CGCG	1 cut(s)	757
BspLI	GGNNCC	2 cut(s)	237, 732
BspMAI	CTGCAG	1 cut(s)	595
BspPI	GGATC	1 cut(s)	44
BspT104I	TTCGAA	1 cut(s)	800
BsrBI	CCGCTC	1 cut(s)	565
BsrDI	GCAATG	1 cut(s)	713
BsrI	ACTGG	3 cut(s)	284, 379, 766
BssECI	CCNNGG	3 cut(s)	353, 645, 811
BssMI	GATC	4 cut(s)	36, 133, 317, 538
BssT1I	CCWWGG	1 cut(s)	645
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	3 cut(s)	148, 256, 460
Bst6I	CTCTTC	1 cut(s)	604
BstBI	TTCGAA	1 cut(s)	800
BstDEI	CTNAG	2 cut(s)	213, 561
BstDSI	CCRYGG	1 cut(s)	811
BstENI	CCTNNNNNAGG	1 cut(s)	73
BstFNI	CGCG	1 cut(s)	757
BstHHI	GCGC	1 cut(s)	757
BstKTI	GATC	4 cut(s)	39, 136, 320, 541
BstMAI	GTCTC	1 cut(s)	687
BstMBI	GATC	4 cut(s)	36, 133, 317, 538
BstMCI	CGRYCG	1 cut(s)	320
BstMWI	GCNNNNNNNGC	2 cut(s)	511, 596
BstNI	CCWGG	1 cut(s)	354
BstSCI	CCNGG	2 cut(s)	352, 466
BstSFI	CTRYAG	2 cut(s)	591, 830
BstUI	CGCG	1 cut(s)	757
BstV1I	GCAGC	4 cut(s)	131, 511, 514, 577
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	538
BstXI	CCANNNNNNTGG	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	538
BsuRI	GGCC	2 cut(s)	423, 644
BtgI	CCRYGG	1 cut(s)	811
BtsIMutI	CAGTG	1 cut(s)	277
CaiI	CAGNNNCTG	2 cut(s)	152, 599
CfoI	GCGC	1 cut(s)	757
Cfr13I	GGNCC	1 cut(s)	642
Csp6I	GTAC	3 cut(s)	471, 617, 759
CviAII	CATG	1 cut(s)	334
CviQI	GTAC	3 cut(s)	471, 617, 759
DdeI	CTNAG	2 cut(s)	213, 561
DpnI	GATC	4 cut(s)	38, 135, 319, 540
DpnII	GATC	4 cut(s)	36, 133, 317, 538
EaeI	YGGCCR	1 cut(s)	421
Eam1104I	CTCTTC	1 cut(s)	604
EarI	CTCTTC	1 cut(s)	604
Eco130I	CCWWGG	1 cut(s)	645
Eco24I	GRGCYC	1 cut(s)	735
EcoNI	CCTNNNNNAGG	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	645
EcoT38I	GRGCYC	1 cut(s)	735
ErhI	CCWWGG	1 cut(s)	645
FaeI	CATG	1 cut(s)	337
FaiI	YATR	6 cut(s)	127, 335, 399, 528, 698, 738
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FatI	CATG	1 cut(s)	333
FauI	CCCGC	1 cut(s)	558
Fnu4HI	GCNGC	4 cut(s)	120, 500, 503, 591
FriOI	GRGCYC	1 cut(s)	735
Fsp4HI	GCNGC	4 cut(s)	120, 500, 503, 591
GlaI	GCGC	1 cut(s)	756
GluI	GCNGC	4 cut(s)	120, 500, 503, 591
HaeIII	GGCC	2 cut(s)	423, 644
HapII	CCGG	2 cut(s)	57, 468
HhaI	GCGC	1 cut(s)	757
Hin1II	CATG	1 cut(s)	337
Hin6I	GCGC	1 cut(s)	755
HinP1I	GCGC	1 cut(s)	755
HindIII	AAGCTT	1 cut(s)	512
HinfI	GANTC	4 cut(s)	197, 479, 785, 797
HpaII	CCGG	2 cut(s)	57, 468
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	655
Hpy188I	TCNGA	6 cut(s)	41, 202, 214, 244, 408, 664
Hpy188III	TCNNGA	4 cut(s)	131, 137, 269, 536
Hpy8I	GTNNAC	1 cut(s)	655
HpyAV	CCTTC	1 cut(s)	384
HpyCH4III	ACNGT	3 cut(s)	148, 256, 460
HpyCH4IV	ACGT	1 cut(s)	657
HpyCH4V	TGCA	7 cut(s)	13, 92, 499, 593, 713, 718, 773
HpyF10VI	GCNNNNNNNGC	2 cut(s)	511, 596
HpyF3I	CTNAG	2 cut(s)	213, 561
HpySE526I	ACGT	1 cut(s)	657
Hsp92II	CATG	1 cut(s)	337
HspAI	GCGC	1 cut(s)	755
Kzo9I	GATC	4 cut(s)	36, 133, 317, 538
LmnI	GCTCC	3 cut(s)	103, 235, 730
Lsp1109I	GCAGC	4 cut(s)	131, 511, 514, 577
LweI	GCATC	4 cut(s)	101, 148, 262, 586
MaeII	ACGT	1 cut(s)	657
MalI	GATC	4 cut(s)	38, 135, 319, 540
MbiI	CCGCTC	1 cut(s)	565
MboI	GATC	4 cut(s)	36, 133, 317, 538
MboII	GAAGA	3 cut(s)	201, 311, 621
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	1 cut(s)	735
MluCI	AATT	7 cut(s)	19, 83, 483, 547, 585, 741, 768
MlyI	GAGTC	1 cut(s)	794
MmeI	TCCRAC	1 cut(s)	708
MnlI	CCTC	6 cut(s)	66, 69, 208, 430, 742, 818
MseI	TTAA	2 cut(s)	23, 189
MslI	CAYNNNNRTG	2 cut(s)	282, 810
MspI	CCGG	2 cut(s)	57, 468
MspR9I	CCNGG	2 cut(s)	354, 468
MvaI	CCWGG	1 cut(s)	354
MvnI	CGCG	1 cut(s)	757
MwoI	GCNNNNNNNGC	2 cut(s)	511, 596
NciI	CCSGG	1 cut(s)	468
NdeII	GATC	4 cut(s)	36, 133, 317, 538
NlaIII	CATG	1 cut(s)	337
NlaIV	GGNNCC	2 cut(s)	237, 732
NspV	TTCGAA	1 cut(s)	800
OliI	CACNNNNGTG	2 cut(s)	282, 810
PfeI	GAWTC	3 cut(s)	197, 479, 797
PkrI	GCNGC	4 cut(s)	121, 501, 504, 592
Ple19I	CGATCG	1 cut(s)	320
PleI	GAGTC	1 cut(s)	793
PpsI	GAGTC	1 cut(s)	793
PsiI	TTATAA	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	2 cut(s)	237, 732
PspPI	GGNCC	1 cut(s)	642
PsrI	GAACNNNNNNTAC	2 cut(s)	333, 365
PstI	CTGCAG	1 cut(s)	595
PstNI	CAGNNNCTG	2 cut(s)	152, 599
PsuI	RGATCY	1 cut(s)	538
PvuI	CGATCG	1 cut(s)	320
RsaI	GTAC	3 cut(s)	472, 618, 760
RsaNI	GTAC	3 cut(s)	471, 617, 759
RseI	CAYNNNNRTG	2 cut(s)	282, 810
SaqAI	TTAA	2 cut(s)	23, 189
SatI	GCNGC	4 cut(s)	120, 500, 503, 591
Sau3AI	GATC	4 cut(s)	36, 133, 317, 538
Sau96I	GGNCC	1 cut(s)	642
SchI	GAGTC	1 cut(s)	794
ScrFI	CCNGG	2 cut(s)	354, 468
SduI	GDGCHC	1 cut(s)	735
SetI	ASST	9 cut(s)	124, 251, 418, 507, 516, 660, 687, 753, 810
SfaNI	GCATC	4 cut(s)	101, 148, 262, 586
SfcI	CTRYAG	2 cut(s)	591, 830
SfuI	TTCGAA	1 cut(s)	800
SmiMI	CAYNNNNRTG	2 cut(s)	282, 810
SmlI	CTYRAG	3 cut(s)	70, 137, 680
SmoI	CTYRAG	3 cut(s)	70, 137, 680
Sse9I	AATT	7 cut(s)	19, 83, 483, 547, 585, 741, 768
SsiI	CCGC	2 cut(s)	428, 565
StyD4I	CCNGG	2 cut(s)	352, 466
StyI	CCWWGG	1 cut(s)	645
TaaI	ACNGT	3 cut(s)	148, 256, 460
TaiI	ACGT	1 cut(s)	660
TaqI	TCGA	5 cut(s)	316, 388, 519, 607, 800
TasI	AATT	7 cut(s)	19, 83, 483, 547, 585, 741, 768
TatI	WGTACW	1 cut(s)	616
TfiI	GAWTC	3 cut(s)	197, 479, 797
Tru1I	TTAA	2 cut(s)	23, 189
Tru9I	TTAA	2 cut(s)	23, 189
TscAI	CASTG	1 cut(s)	284
TseI	GCWGC	4 cut(s)	119, 499, 502, 590
TspDTI	ATGAA	4 cut(s)	114, 312, 492, 515
TspGWI	ACGGA	2 cut(s)	195, 800
TspRI	CASTG	1 cut(s)	284
XagI	CCTNNNNNAGG	1 cut(s)	73
XapI	RAATTY	2 cut(s)	19, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.