Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009864

Physical Location & Seq

Genomic Coordinates Forward (+)

55026077 .. 55028481

Gene Structure 2405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0456200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTATCGATTCGGTGAACGCGACGAGACCACAACCAAAGCCCTTACCCGTAAGGCAAGAAGTCATTTTCCGGAAGGCATAGAAAAGAACCTTGTGACGAGGTCGACCGTCTTCTTCTCCGTTTCGCCTAAAGCGACGCCGTTTCGGCTCGTTCGGTCTTCGAGAAGGCTCGCGACTCCGGTGTTCTCGAAGTCGTCAGAGGCGGAGGAGGTCTCGGCGGCGCCGGAGGACGAGTGGCTGAAGAGGCTACCGGACAAGAAGAAGCCTCTGTACTCTCACAGTCTTCCTTGCATTGAGGCCTGGCTGAGAAGCTTGGGGTTTTTCCAGAGCAGAGAGGACCGGGCCGTTTGGCTGATCGAAAAGCCCGAGTGGCATGCCCAGCTCTCTCTCGACGTCACCGATCTCTATGTCAGGTATCTGAAGACCGGACCTGGAAATCTTGAAAAGGATATGGAGAGGAGGTTTAGCTATGCACTGAGCAGAGAGGACATCGAAAATGCAGTGCTTGGAGGTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003984 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005948 GO:0006082 GO:0006520 GO:0006549 GO:0006573 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009097 GO:0009099 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016740 GO:0016744 GO:0019752 GO:0032991 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

ACT ACT_5 ALS_ss_C

Protein Analysis

172

Amino Acids

19.88

Weight (kDa)

9.21

Isoelectric Point (pI)

63.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3143	PF11341	105 - 171	2.2e-23	Protein of unknown function (DUF3143)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31810 AT2G31810 AT2G31810
fragaria_vesca	FvH4_1g00350 FvH4_1g00350
malus_domestica	MD02G1002700.v1.1 MD15G1145900.v1.1
prunus_persica	Prupe.7G268500_v2.0.a1
pyrus_communis	pycom15g13110
rosa_chinensis	RchiOBHm_Chr2g0084781
rosa_laevigata	RLG00000015638
rosa_multiflora	Rmu_sc0002352.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155820
rosa_rugosa	Rorug01G0456000 Rorug01G0456100 Rorug01G0456200
rosa_samantha	Rh2AG003300 Rh2BG004900 Rh2CG005300 Rh2DG004700
rosa_wichuraiana	Rw2G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	396
AccB1I	GGYRCC	1 cut(s)	220
AccI	GTMKAC	1 cut(s)	104
AccII	CGCG	2 cut(s)	21, 173
AccIII	TCCGGA	1 cut(s)	70
AciI	CCGC	2 cut(s)	203, 218
AcuI	CTGAAG	2 cut(s)	260, 440
AcyI	GRCGYC	3 cut(s)	137, 221, 393
AfaI	GTAC	1 cut(s)	272
AgsI	TTSAA	1 cut(s)	443
AjnI	CCWGG	2 cut(s)	299, 430
AluBI	AGCT	3 cut(s)	312, 382, 468
AluI	AGCT	3 cut(s)	312, 382, 468
Alw26I	GTCTC	2 cut(s)	20, 217
Ama87I	CYCGRG	1 cut(s)	365
Aor13HI	TCCGGA	1 cut(s)	70
AoxI	GGCC	2 cut(s)	297, 342
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	4 cut(s)	337, 342, 428, 512
AsuC2I	CCSGG	1 cut(s)	341
AsuHPI	GGTGA	2 cut(s)	26, 388
AvaI	CYCGRG	1 cut(s)	365
AvaII	GGWCC	3 cut(s)	337, 428, 512
BanI	GGYRCC	1 cut(s)	220
BarI	GAAGNNNNNNTAC	2 cut(s)	254, 286
BbsI	GAAGAC	4 cut(s)	103, 150, 275, 428
BceAI	ACGGC	2 cut(s)	124, 329
BcgI	CGANNNNNNTGC	2 cut(s)	356, 390
BciT130I	CCWGG	2 cut(s)	301, 432
BcnI	CCSGG	1 cut(s)	341
BcoDI	GTCTC	2 cut(s)	20, 217
BfoI	RGCGCY	1 cut(s)	224
BglI	GCCNNNNNGGC	2 cut(s)	145, 370
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme1390I	CCNGG	3 cut(s)	301, 341, 432
Bme18I	GGWCC	3 cut(s)	337, 428, 512
BmeT110I	CYCGRG	1 cut(s)	365
BmgT120I	GGNCC	4 cut(s)	337, 342, 428, 512
BmiI	GGNNCC	2 cut(s)	222, 514
BmrFI	CCNGG	3 cut(s)	301, 341, 432
BpiI	GAAGAC	4 cut(s)	103, 150, 275, 428
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
BpuMI	CCSGG	1 cut(s)	341
Bsa29I	ATCGAT	1 cut(s)	7
BsaHI	GRCGYC	3 cut(s)	137, 221, 393
BsaI	GGTCTC	2 cut(s)	20, 217
BsaWI	WCCGGW	4 cut(s)	70, 178, 250, 425
BsaXI	ACNNNNNCTCC	4 cut(s)	218, 248, 446, 476
BseAI	TCCGGA	1 cut(s)	70
BseBI	CCWGG	2 cut(s)	301, 432
BseCI	ATCGAT	1 cut(s)	7
BseMII	CTCAG	2 cut(s)	296, 467
BseRI	GAGGAG	2 cut(s)	221, 472
BseYI	CCCAGC	1 cut(s)	378
Bsh1236I	CGCG	2 cut(s)	21, 173
Bsh1285I	CGRYCG	1 cut(s)	108
BshFI	GGCC	2 cut(s)	299, 344
BshNI	GGYRCC	1 cut(s)	220
BshVI	ATCGAT	1 cut(s)	7
BsiEI	CGRYCG	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	365
BsiSI	CCGG	6 cut(s)	71, 179, 224, 251, 340, 426
BslFI	GGGAC	1 cut(s)	498
BsmAI	GTCTC	2 cut(s)	20, 217
BsmFI	GGGAC	1 cut(s)	498
BsnI	GGCC	2 cut(s)	299, 344
Bso31I	GGTCTC	2 cut(s)	20, 217
BsoBI	CYCGRG	1 cut(s)	365
Bsp13I	TCCGGA	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	354, 400
Bsp68I	TCGCGA	1 cut(s)	173
BspACI	CCGC	2 cut(s)	203, 218
BspANI	GGCC	2 cut(s)	299, 344
BspCNI	CTCAG	2 cut(s)	297, 468
BspDI	ATCGAT	1 cut(s)	7
BspEI	TCCGGA	1 cut(s)	70
BspFNI	CGCG	2 cut(s)	21, 173
BspLI	GGNNCC	2 cut(s)	222, 514
BspT107I	GGYRCC	1 cut(s)	220
BspTNI	GGTCTC	2 cut(s)	20, 217
BssMI	GATC	2 cut(s)	354, 400
BssNI	GRCGYC	3 cut(s)	137, 221, 393
Bst2UI	CCWGG	2 cut(s)	301, 432
Bst4CI	ACNGT	2 cut(s)	109, 281
Bst6I	CTCTTC	1 cut(s)	236
BstACI	GRCGYC	3 cut(s)	137, 221, 393
BstC8I	GCNNGC	2 cut(s)	171, 375
BstDEI	CTNAG	2 cut(s)	305, 476
BstFNI	CGCG	2 cut(s)	21, 173
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	2 cut(s)	357, 403
BstMAI	GTCTC	2 cut(s)	20, 217
BstMBI	GATC	2 cut(s)	354, 400
BstMCI	CGRYCG	1 cut(s)	108
BstMWI	GCNNNNNNNGC	4 cut(s)	145, 244, 370, 379
BstNI	CCWGG	2 cut(s)	301, 432
BstNSI	RCATGY	1 cut(s)	377
BstSCI	CCNGG	3 cut(s)	299, 339, 430
BstUI	CGCG	2 cut(s)	21, 173
BstV2I	GAAGAC	4 cut(s)	103, 150, 275, 428
Bsu15I	ATCGAT	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	299, 344
BsuTUI	ATCGAT	1 cut(s)	7
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	2 cut(s)	473, 507
BtuMI	TCGCGA	1 cut(s)	173
Cac8I	GCNNGC	2 cut(s)	171, 375
CfoI	GCGC	1 cut(s)	223
Cfr13I	GGNCC	4 cut(s)	337, 342, 428, 512
ClaI	ATCGAT	1 cut(s)	7
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	1 cut(s)	374
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	2 cut(s)	305, 476
DinI	GGCGCC	1 cut(s)	222
DpnI	GATC	2 cut(s)	356, 402
DpnII	GATC	2 cut(s)	354, 400
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
EciI	GGCGGA	1 cut(s)	218
Eco147I	AGGCCT	1 cut(s)	299
Eco31I	GGTCTC	2 cut(s)	20, 217
Eco47I	GGWCC	3 cut(s)	337, 428, 512
Eco57I	CTGAAG	2 cut(s)	260, 440
Eco88I	CYCGRG	1 cut(s)	365
EcoO109I	RGGNCCY	1 cut(s)	512
EcoRII	CCWGG	2 cut(s)	299, 430
EgeI	GGCGCC	1 cut(s)	222
EheI	GGCGCC	1 cut(s)	222
FaeI	CATG	1 cut(s)	377
FaiI	YATR	5 cut(s)	80, 375, 408, 452, 471
FaqI	GGGAC	1 cut(s)	498
FatI	CATG	1 cut(s)	373
FblI	GTMKAC	1 cut(s)	104
Fnu4HI	GCNGC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	219
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	1 cut(s)	219
GsaI	CCCAGC	1 cut(s)	382
HaeII	RGCGCY	1 cut(s)	224
HaeIII	GGCC	2 cut(s)	299, 344
HapII	CCGG	6 cut(s)	71, 179, 224, 251, 340, 426
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	223
Hin1I	GRCGYC	3 cut(s)	137, 221, 393
Hin1II	CATG	1 cut(s)	377
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HincII	GTYRAC	1 cut(s)	105
HindII	GTYRAC	1 cut(s)	105
HindIII	AAGCTT	1 cut(s)	310
HinfI	GANTC	2 cut(s)	9, 175
HpaII	CCGG	6 cut(s)	71, 179, 224, 251, 340, 426
HphI	GGTGA	2 cut(s)	26, 388
Hpy166II	GTNNAC	2 cut(s)	17, 105
Hpy188I	TCNGA	2 cut(s)	199, 420
Hpy188III	TCNNGA	7 cut(s)	71, 162, 172, 187, 325, 389, 440
Hpy8I	GTNNAC	2 cut(s)	17, 105
Hpy99I	CGWCG	3 cut(s)	26, 139, 395
HpyAV	CCTTC	2 cut(s)	68, 159
HpyCH4III	ACNGT	2 cut(s)	109, 281
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	3 cut(s)	291, 473, 500
HpyF10VI	GCNNNNNNNGC	4 cut(s)	145, 244, 370, 379
HpyF3I	CTNAG	2 cut(s)	305, 476
HpySE526I	ACGT	1 cut(s)	393
Hsp92I	GRCGYC	3 cut(s)	137, 221, 393
Hsp92II	CATG	1 cut(s)	377
HspAI	GCGC	1 cut(s)	221
KasI	GGCGCC	1 cut(s)	220
Kpn2I	TCCGGA	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	354, 400
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	2 cut(s)	94, 394
MalI	GATC	2 cut(s)	356, 402
MboI	GATC	2 cut(s)	354, 400
MboII	GAAGA	7 cut(s)	103, 106, 150, 253, 271, 275, 433
Mly113I	GGCGCC	1 cut(s)	221
MlyI	GAGTC	1 cut(s)	169
MroI	TCCGGA	1 cut(s)	70
MspI	CCGG	6 cut(s)	71, 179, 224, 251, 340, 426
MspR9I	CCNGG	3 cut(s)	301, 341, 432
MvaI	CCWGG	2 cut(s)	301, 432
MvnI	CGCG	2 cut(s)	21, 173
MwoI	GCNNNNNNNGC	4 cut(s)	145, 244, 370, 379
NarI	GGCGCC	1 cut(s)	221
NciI	CCSGG	1 cut(s)	341
NdeII	GATC	2 cut(s)	354, 400
NlaIII	CATG	1 cut(s)	377
NlaIV	GGNNCC	2 cut(s)	222, 514
NmeAIII	GCCGAG	1 cut(s)	194
NmuCI	GTSAC	2 cut(s)	94, 394
NruI	TCGCGA	1 cut(s)	173
NspI	RCATGY	1 cut(s)	377
PaeI	GCATGC	1 cut(s)	377
PceI	AGGCCT	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	4 cut(s)	18, 131, 363, 396
PfeI	GAWTC	1 cut(s)	9
PflFI	GACNNNGTC	1 cut(s)	100
PkrI	GCNGC	1 cut(s)	220
PleI	GAGTC	1 cut(s)	169
PluTI	GGCGCC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	169
PpuMI	RGGWCCY	1 cut(s)	512
Psp5II	RGGWCCY	1 cut(s)	512
Psp6I	CCWGG	2 cut(s)	299, 430
PspFI	CCCAGC	1 cut(s)	378
PspGI	CCWGG	2 cut(s)	299, 430
PspN4I	GGNNCC	2 cut(s)	222, 514
PspPI	GGNCC	4 cut(s)	337, 342, 428, 512
PspPPI	RGGWCCY	1 cut(s)	512
PsyI	GACNNNGTC	1 cut(s)	100
RruI	TCGCGA	1 cut(s)	173
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SalI	GTCGAC	1 cut(s)	103
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	2 cut(s)	354, 400
Sau96I	GGNCC	4 cut(s)	337, 342, 428, 512
SchI	GAGTC	1 cut(s)	169
ScrFI	CCNGG	3 cut(s)	301, 341, 432
SfoI	GGCGCC	1 cut(s)	222
SinI	GGWCC	3 cut(s)	337, 428, 512
SphI	GCATGC	1 cut(s)	377
SseBI	AGGCCT	1 cut(s)	299
SsiI	CCGC	2 cut(s)	203, 218
SspDI	GGCGCC	1 cut(s)	220
StuI	AGGCCT	1 cut(s)	299
StyD4I	CCNGG	3 cut(s)	299, 339, 430
TaaI	ACNGT	2 cut(s)	109, 281
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	7 cut(s)	7, 104, 161, 188, 357, 390, 492
TaqII	GACCGA	1 cut(s)	144
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	1 cut(s)	221
TfiI	GAWTC	1 cut(s)	9
TscAI	CASTG	2 cut(s)	480, 507
TseFI	GTSAC	2 cut(s)	94, 394
Tsp45I	GTSAC	2 cut(s)	94, 394
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	2 cut(s)	480, 507
Tth111I	GACNNNGTC	1 cut(s)	100
VpaK11BI	GGWCC	3 cut(s)	337, 428, 512
XceI	RCATGY	1 cut(s)	377
XmiI	GTMKAC	1 cut(s)	104
ZraI	GACGTC	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.