Rh2DG004700

Acetolactate synthase small subunit

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
291853 .. 295950
4098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG004700.1

Sequence Viewer

Length: 1209 bp
ATGGCCATGGCAACTATTTCAGCACCCTCCTCAACGTTTCACTCTCCCAAACAGCTGTCTTCCTCTTCCGGCAGCCCCTGCTTTGCCTTGTCTGAAACTCTTACCTTCCCTTCATCATCAACATCATCATCGGCTTCGAGATCAATAAGTCACAACAAACTCACCGTCTCCGCTACTAGAAGCATCCACCAGAACATCTCCAATAATGGCTCTCCCCCTCCTCCAACCCCCGGCGCCAAGGGAGTGAGGAGGCATGCTATTTCAGTGTTCGTTGGGGACGAAAGCGGAATGATTAATCGGATTTCAGGGGTGTTTGCAAGGCGGGGTTACAACATCGAATCTCTGGCTGTTGGTTTGAATAAGGACAAAGCCCTCTTCACCATTGTCGTTTCTGGCACCGATAATGTCTTGCGCCAAGTCATTGAGCAGCTTAACAAGCTCGTCAATGTTATCAAGGTTGAGGATCTCTCTAATGAGCCTCAAGTAGAACGTGAACTAATGCTTATAAAAGTAAATGCAGATCCGAGTTACCTTGCTGAGATCAAGTGGTTGGTGAATATATTTAGAGCAAAAATTGTGGATATCTCAGACTACTCAGTCACCATTGAGGTGACAGGAGATCCTGGGAAAATGGTTGCTCTGCAAAGAAATTTAAGCAAGTTTGGGATCAGAGAAATTGCCAGAACCGGAAAGATAGCTTTGAGGAGAGAAAAGTTGGGTGCTTCCGCTCCATTTTGGCGCTATTCAGCAGCTTCATATCCAGATCTTGAGAGAACAGTGACTGTTGATGCTCTTGCAGGAGTTGAGAAGGGAGTTGTTAACGCCGAATCTGATACATCTTCTGGGGGTGATGTTTATCCTGTGGAGCCTTCTGGTACCGTTACTGTCAATCAAGTCCTTAATGCTAACTGGGGTGCTCTTAATGATGATGATACAAGTGGACTTCGATCGCACACTTTATCTATGCTTGTAAATGATGTTCCTGGGGTTCTTTACATTATTACGGGCGTTTTTGCTCGAAGGGGTTATAACATTCAGAGTTTAGCTGTTGGCCATGCAGAAGTTGAGGGGCAATCTCGCATTACTACTGTTGTTCCTGGTACAGATGAATCGATTAGCAAGTTGGTGCAACAGCTCTATAAGCTTGTCGATGTGCATGACGTGAGTATGTTTAACTATTCTAAAGAAAGCATTTCGTTGATGCATTAA

Protein Analysis

402

Amino Acids

43.35

Weight (kDa)

7.11

Isoelectric Point (pI)

49.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACT PF01842 85 - 148 5e-10 ACT domain
ACT_AHAS_ss PF22629 87 - 152 3.3e-17 AHAS small subunit-like ACT domain
ACT_5 PF13710 95 - 153 1.6e-07 ACT domain
ALS_ss_C PF10369 164 - 237 1.9e-27 Small subunit of acetolactate synthase
ACT PF01842 318 - 382 1.1e-08 ACT domain
ACT_AHAS_ss PF22629 320 - 386 6.6e-22 AHAS small subunit-like ACT domain
ACT_5 PF13710 327 - 388 1.4e-10 ACT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009864)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 506, 1029
AasI GACNNNNNNGTC 1 cut(s) 596
Acc65I GGTACC 1 cut(s) 875
AccB1I GGYRCC 3 cut(s) 233, 395, 875
AccBSI CCGCTC 1 cut(s) 728
AciI CCGC 4 cut(s) 171, 285, 322, 726
AclI AACGTT 1 cut(s) 35
AclWI GGATC 4 cut(s) 471, 515, 614, 674
AcoI YGGCCR 2 cut(s) 3, 1051
AcsI RAATTY 1 cut(s) 649
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 2 cut(s) 877, 1102
AfiI CCNNNNNNNGG 1 cut(s) 230
AgsI TTSAA 1 cut(s) 358
AjiI CACGTC 1 cut(s) 1162
AjnI CCWGG 3 cut(s) 622, 982, 1096
AluBI AGCT 8 cut(s) 55, 430, 439, 698, 752, 1046, 1135, 1144
AluI AGCT 8 cut(s) 55, 430, 439, 698, 752, 1046, 1135, 1144
Alw21I GWGCWC 1 cut(s) 919
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 4 cut(s) 471, 515, 614, 674
AlwNI CAGNNNCTG 2 cut(s) 78, 782
AoxI GGCC 2 cut(s) 3, 1051
ApeKI GCWGC 3 cut(s) 72, 427, 749
ApoI RAATTY 1 cut(s) 649
ArsI GACNNNNNNTTYG 2 cut(s) 150, 182
AseI ATTAAT 1 cut(s) 294
Asp718I GGTACC 1 cut(s) 875
AspLEI GCGC 3 cut(s) 236, 414, 741
AsuC2I CCSGG 1 cut(s) 231
AsuHPI GGTGA 6 cut(s) 154, 370, 565, 592, 622, 860
BalI TGGCCA 2 cut(s) 5, 1053
BanI GGYRCC 3 cut(s) 233, 395, 875
BbsI GAAGAC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 919
BbvI GCAGC 3 cut(s) 84, 439, 761
BciT130I CCWGG 3 cut(s) 624, 984, 1098
BcnI CCSGG 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 1 cut(s) 177
BfoI RGCGCY 2 cut(s) 237, 742
BglII AGATCT 1 cut(s) 763
BisI GCNGC 3 cut(s) 73, 428, 750
BlsI GCNGC 3 cut(s) 74, 429, 751
Bme1390I CCNGG 4 cut(s) 231, 624, 984, 1098
BmgBI CACGTC 1 cut(s) 1162
BmiI GGNNCC 4 cut(s) 235, 397, 867, 877
BmrFI CCNGG 4 cut(s) 231, 624, 984, 1098
BmrI ACTGGG 1 cut(s) 919
BmsI GCATC 3 cut(s) 192, 778, 1191
BmuI ACTGGG 1 cut(s) 919
BpiI GAAGAC 1 cut(s) 51
BplI GAGNNNNNCTC 2 cut(s) 452, 484
BpuEI CTTGAG 2 cut(s) 465, 788
BpuMI CCSGG 1 cut(s) 231
Bsa29I ATCGAT 1 cut(s) 1112
BsaBI GATNNNNATC 1 cut(s) 855
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 5 cut(s) 6, 229, 237, 623, 983
BsaWI WCCGGW 1 cut(s) 686
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse1I ACTGG 1 cut(s) 914
Bse8I GATNNNNATC 1 cut(s) 855
BseBI CCWGG 3 cut(s) 624, 984, 1098
BseCI ATCGAT 1 cut(s) 1112
BseDI CCNNGG 5 cut(s) 6, 229, 237, 623, 983
BseGI GGATG 1 cut(s) 183
BseJI GATNNNNATC 1 cut(s) 855
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMII CTCAG 3 cut(s) 528, 600, 609
BseNI ACTGG 1 cut(s) 914
BseRI GAGGAG 4 cut(s) 19, 210, 262, 718
BseXI GCAGC 3 cut(s) 84, 439, 761
Bsh1285I CGRYCG 1 cut(s) 950
BshFI GGCC 2 cut(s) 5, 1053
BshNI GGYRCC 3 cut(s) 233, 395, 875
BshVI ATCGAT 1 cut(s) 1112
BsiEI CGRYCG 1 cut(s) 950
BsiHKAI GWGCWC 1 cut(s) 919
BsiSI CCGG 3 cut(s) 69, 231, 687
BslFI GGGAC 1 cut(s) 290
BslI CCNNNNNNNGG 1 cut(s) 230
BsmAI GTCTC 1 cut(s) 172
BsmBI CGTCTC 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 290
BsnI GGCC 2 cut(s) 5, 1053
Bsp1286I GDGCHC 1 cut(s) 919
Bsp143I GATC 8 cut(s) 140, 463, 520, 540, 619, 666, 763, 947
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 4 cut(s) 171, 285, 322, 726
BspANI GGCC 2 cut(s) 5, 1053
BspCNI CTCAG 3 cut(s) 529, 599, 608
BspDI ATCGAT 1 cut(s) 1112
BspLI GGNNCC 4 cut(s) 235, 397, 867, 877
BspPI GGATC 4 cut(s) 471, 515, 614, 674
BspT107I GGYRCC 3 cut(s) 233, 395, 875
BsrBI CCGCTC 1 cut(s) 728
BsrI ACTGG 1 cut(s) 914
BssECI CCNNGG 5 cut(s) 6, 229, 237, 623, 983
BssMI GATC 8 cut(s) 140, 463, 520, 540, 619, 666, 763, 947
BssNI GRCGYC 1 cut(s) 234
BssT1I CCWWGG 2 cut(s) 6, 237
Bst2UI CCWGG 3 cut(s) 624, 984, 1098
Bst4CI ACNGT 6 cut(s) 166, 778, 784, 880, 886, 1090
Bst6I CTCTTC 2 cut(s) 70, 380
BstACI GRCGYC 1 cut(s) 234
BstAPI GCANNNNNTGC 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 3 cut(s) 537, 586, 595
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 1 cut(s) 183
BstH2I RGCGCY 2 cut(s) 237, 742
BstHHI GCGC 3 cut(s) 236, 414, 741
BstKTI GATC 8 cut(s) 143, 466, 523, 543, 622, 669, 766, 950
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 8 cut(s) 140, 463, 520, 540, 619, 666, 763, 947
BstMCI CGRYCG 1 cut(s) 950
BstMWI GCNNNNNNNGC 3 cut(s) 78, 436, 1141
BstNI CCWGG 3 cut(s) 624, 984, 1098
BstNSI RCATGY 1 cut(s) 257
BstSCI CCNGG 4 cut(s) 229, 622, 982, 1096
BstV1I GCAGC 3 cut(s) 84, 439, 761
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 4 cut(s) 463, 520, 619, 763
BstYI RGATCY 4 cut(s) 463, 520, 619, 763
Bsu15I ATCGAT 1 cut(s) 1112
BsuRI GGCC 2 cut(s) 5, 1053
BsuTUI ATCGAT 1 cut(s) 1112
BtgI CCRYGG 1 cut(s) 6
BtrI CACGTC 1 cut(s) 1162
BtsCI GGATG 1 cut(s) 183
BtsIMutI CAGTG 2 cut(s) 270, 783
Cac8I GCNNGC 1 cut(s) 255
CaiI CAGNNNCTG 2 cut(s) 78, 782
CfoI GCGC 3 cut(s) 236, 414, 741
ClaI ATCGAT 1 cut(s) 1112
Csp6I GTAC 2 cut(s) 876, 1101
CspCI CAANNNNNGTGG 2 cut(s) 558, 593
CviAII CATG 4 cut(s) 7, 254, 1055, 1157
CviQI GTAC 2 cut(s) 876, 1101
DdeI CTNAG 3 cut(s) 537, 586, 595
DinI GGCGCC 1 cut(s) 235
DpnI GATC 8 cut(s) 142, 465, 522, 542, 621, 668, 765, 949
DpnII GATC 8 cut(s) 140, 463, 520, 540, 619, 666, 763, 947
DrdI GACNNNNNNGTC 1 cut(s) 596
DseDI GACNNNNNNGTC 1 cut(s) 596
EaeI YGGCCR 2 cut(s) 3, 1051
Eam1104I CTCTTC 2 cut(s) 70, 380
EarI CTCTTC 2 cut(s) 70, 380
Eco130I CCWWGG 2 cut(s) 6, 237
Eco32I GATATC 1 cut(s) 583
EcoRII CCWGG 3 cut(s) 622, 982, 1096
EcoRV GATATC 1 cut(s) 583
EcoT14I CCWWGG 2 cut(s) 6, 237
EcoT22I ATGCAT 1 cut(s) 1206
EgeI GGCGCC 1 cut(s) 235
EheI GGCGCC 1 cut(s) 235
ErhI CCWWGG 2 cut(s) 6, 237
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 4 cut(s) 10, 257, 1058, 1160
FaqI GGGAC 1 cut(s) 290
FatI CATG 4 cut(s) 6, 253, 1054, 1156
FauI CCCGC 1 cut(s) 315
Fnu4HI GCNGC 3 cut(s) 73, 428, 750
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 3 cut(s) 73, 428, 750
FspBI CTAG 1 cut(s) 177
GlaI GCGC 3 cut(s) 235, 413, 740
GluI GCNGC 3 cut(s) 73, 428, 750
HaeII RGCGCY 2 cut(s) 237, 742
HaeIII GGCC 2 cut(s) 5, 1053
HapII CCGG 3 cut(s) 69, 231, 687
HhaI GCGC 3 cut(s) 236, 414, 741
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 4 cut(s) 10, 257, 1058, 1160
Hin6I GCGC 3 cut(s) 234, 412, 739
HinP1I GCGC 3 cut(s) 234, 412, 739
HincII GTYRAC 1 cut(s) 820
HindII GTYRAC 1 cut(s) 820
HindIII AAGCTT 1 cut(s) 1142
HinfI GANTC 3 cut(s) 338, 827, 1109
HpaI GTTAAC 1 cut(s) 820
HpaII CCGG 3 cut(s) 69, 231, 687
HphI GGTGA 6 cut(s) 154, 370, 565, 592, 622, 860
Hpy166II GTNNAC 3 cut(s) 494, 820, 941
Hpy188I TCNGA 7 cut(s) 94, 300, 525, 589, 671, 832, 1038
Hpy188III TCNNGA 3 cut(s) 138, 761, 767
Hpy8I GTNNAC 3 cut(s) 494, 820, 941
HpyAV CCTTC 5 cut(s) 115, 120, 802, 879, 1014
HpyCH4III ACNGT 6 cut(s) 166, 778, 784, 880, 886, 1090
HpyCH4IV ACGT 3 cut(s) 35, 490, 1161
HpyCH4V TGCA 8 cut(s) 317, 518, 643, 797, 1058, 1129, 1156, 1204
HpyF10VI GCNNNNNNNGC 3 cut(s) 78, 436, 1141
HpyF3I CTNAG 3 cut(s) 537, 586, 595
HpySE526I ACGT 3 cut(s) 35, 490, 1161
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 4 cut(s) 10, 257, 1058, 1160
HspAI GCGC 3 cut(s) 234, 412, 739
KasI GGCGCC 1 cut(s) 233
KpnI GGTACC 1 cut(s) 879
KspAI GTTAAC 1 cut(s) 820
Kzo9I GATC 8 cut(s) 140, 463, 520, 540, 619, 666, 763, 947
LmnI GCTCC 2 cut(s) 733, 865
Lsp1109I GCAGC 3 cut(s) 84, 439, 761
LweI GCATC 3 cut(s) 192, 778, 1191
MaeI CTAG 1 cut(s) 177
MaeII ACGT 3 cut(s) 35, 490, 1161
MaeIII GTNAC 7 cut(s) 149, 326, 527, 598, 610, 778, 880
MalI GATC 8 cut(s) 142, 465, 522, 542, 621, 668, 765, 949
MbiI CCGCTC 1 cut(s) 728
MboI GATC 8 cut(s) 140, 463, 520, 540, 619, 666, 763, 947
MboII GAAGA 4 cut(s) 51, 57, 367, 831
MflI RGATCY 4 cut(s) 463, 520, 619, 763
MhlI GDGCHC 1 cut(s) 919
MlsI TGGCCA 2 cut(s) 5, 1053
MluCI AATT 3 cut(s) 573, 649, 675
MluNI TGGCCA 2 cut(s) 5, 1053
Mly113I GGCGCC 1 cut(s) 234
MmeI TCCRAC 1 cut(s) 248
Mox20I TGGCCA 2 cut(s) 5, 1053
Mph1103I ATGCAT 1 cut(s) 1206
MscI TGGCCA 2 cut(s) 5, 1053
MseI TTAA 8 cut(s) 294, 432, 653, 819, 900, 921, 1173, 1207
MslI CAYNNNNRTG 1 cut(s) 608
Msp20I TGGCCA 2 cut(s) 5, 1053
MspA1I CMGCKG 1 cut(s) 55
MspI CCGG 3 cut(s) 69, 231, 687
MspR9I CCNGG 4 cut(s) 231, 624, 984, 1098
MvaI CCWGG 3 cut(s) 624, 984, 1098
MwoI GCNNNNNNNGC 3 cut(s) 78, 436, 1141
NarI GGCGCC 1 cut(s) 234
NciI CCSGG 1 cut(s) 231
NcoI CCATGG 1 cut(s) 6
NdeII GATC 8 cut(s) 140, 463, 520, 540, 619, 666, 763, 947
NlaIII CATG 4 cut(s) 10, 257, 1058, 1160
NlaIV GGNNCC 4 cut(s) 235, 397, 867, 877
NmuCI GTSAC 4 cut(s) 149, 598, 610, 778
NsiI ATGCAT 1 cut(s) 1206
NspI RCATGY 1 cut(s) 257
PaeI GCATGC 1 cut(s) 257
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PfeI GAWTC 3 cut(s) 338, 827, 1109
PkrI GCNGC 3 cut(s) 74, 429, 751
Ple19I CGATCG 1 cut(s) 950
PluTI GGCGCC 1 cut(s) 237
PshBI ATTAAT 1 cut(s) 294
PsiI TTATAA 2 cut(s) 506, 1029
Psp1406I AACGTT 1 cut(s) 35
Psp6I CCWGG 3 cut(s) 622, 982, 1096
PspGI CCWGG 3 cut(s) 622, 982, 1096
PspN4I GGNNCC 4 cut(s) 235, 397, 867, 877
PsrI GAACNNNNNNTAC 2 cut(s) 963, 995
PstNI CAGNNNCTG 2 cut(s) 78, 782
PsuI RGATCY 4 cut(s) 463, 520, 619, 763
PvuI CGATCG 1 cut(s) 950
PvuII CAGCTG 1 cut(s) 55
RsaI GTAC 2 cut(s) 877, 1102
RsaNI GTAC 2 cut(s) 876, 1101
RseI CAYNNNNRTG 1 cut(s) 608
SaqAI TTAA 8 cut(s) 294, 432, 653, 819, 900, 921, 1173, 1207
SatI GCNGC 3 cut(s) 73, 428, 750
Sau3AI GATC 8 cut(s) 140, 463, 520, 540, 619, 666, 763, 947
ScrFI CCNGG 4 cut(s) 231, 624, 984, 1098
SduI GDGCHC 1 cut(s) 919
SfaNI GCATC 3 cut(s) 192, 778, 1191
SfoI GGCGCC 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 608
SmlI CTYRAG 2 cut(s) 480, 767
SmoI CTYRAG 2 cut(s) 480, 767
SphI GCATGC 1 cut(s) 257
Sse9I AATT 3 cut(s) 573, 649, 675
SsiI CCGC 4 cut(s) 171, 285, 322, 726
SspDI GGCGCC 1 cut(s) 233
SspMI CTAG 1 cut(s) 177
StyD4I CCNGG 4 cut(s) 229, 622, 982, 1096
StyI CCWWGG 2 cut(s) 6, 237
TaaI ACNGT 6 cut(s) 166, 778, 784, 880, 886, 1090
TaiI ACGT 3 cut(s) 38, 493, 1164
TaqI TCGA 6 cut(s) 137, 336, 946, 1018, 1112, 1149
TasI AATT 3 cut(s) 573, 649, 675
TfiI GAWTC 3 cut(s) 338, 827, 1109
Tru1I TTAA 8 cut(s) 294, 432, 653, 819, 900, 921, 1173, 1207
Tru9I TTAA 8 cut(s) 294, 432, 653, 819, 900, 921, 1173, 1207
TscAI CASTG 2 cut(s) 270, 783
TseFI GTSAC 4 cut(s) 149, 598, 610, 778
TseI GCWGC 3 cut(s) 72, 427, 749
Tsp45I GTSAC 4 cut(s) 149, 598, 610, 778
TspDTI ATGAA 3 cut(s) 102, 744, 1122
TspRI CASTG 2 cut(s) 270, 783
VspI ATTAAT 1 cut(s) 294
XapI RAATTY 1 cut(s) 649
XceI RCATGY 1 cut(s) 257
XspI CTAG 1 cut(s) 177
Zsp2I ATGCAT 1 cut(s) 1206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.