Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002352.1

Orthogroup ID

OG0009864

Physical Location & Seq

Genomic Coordinates Forward (+)

4072 .. 7898

Gene Structure 3827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002352.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

atggcaactatttcagcaccctcctcaacgtttcactctcccaaacagctgtcttcctcttccggcagcccctgctttggcttgtctgaaactcttaccttcccttcatcatcaacatcatcatcggcttcgagatcgataagtcacaacaaactcaccgtctccgctactagaagcatccaccagaacatctccaataacggctctccccctcctccaaccccccgcgccaagggagtgaggaggcatgctatttcagtgttcgttggggacgaaagcggaatgattaatcggatttcaggggtgtttgcaaggcggggttacaacatcgaatctctggctgttggtttgaataaggacaaagccctcttcaccattgtcgtttctggcaccgataatgtcttgcgccaagtcattgagcagcttaacaagctcgtcaatgttatcaaggttgaggatctctctaatgagcctcaagtagaacgtgaactaatgcttataaaagtaaatgcagatccgagttaccttgctgagatcaagtggttggtgaatatatttagagcaaaaattgtggatatctcagactactcagtcaccattgaggtgacaggagatcctgggaaaatggttgctctgcaaagaaatttaagcaagtttgggatcagagaaattgccagaaccggaaagatagctttgaggagagaaaagttgggtgcttccgctccattttggcgctattcagcagcttcatatccagatcttgagagaacagtgactgttgatgctcttgcaggagttgagaagggagttgttaacgccgaatctgatacatcttctgggggtgatgtttatcctgtggagccttctggtaccgttactgtcaatcaagtccttaatgctaactggggtgctcttaatgatgatgatacaagtggacttcgatcgcacactttatctatgcttgtaaatgatgttcctggggttctttacattattacgggcgtttttgctcgaaggggttataacattcagagtttagctgttggccatgcagaagttgaggggcaatctcgcattactactgttgttcctggagacctgaacaagatggttgcactgcagagattgttagaaccctatgggatttgtgaggtggcgcgtacgggaagaattgctctggtgcgtgagtcaggggttgattctagatatctccgtggatattctatacctctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003984 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005948 GO:0006082 GO:0006520 GO:0006549 GO:0006573 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009097 GO:0009099 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016740 GO:0016744 GO:0019752 GO:0032991 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

ACT ACT_5 ALS_ss_C

Protein Analysis

411

Amino Acids

44.34

Weight (kDa)

9.08

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31810 AT2G31810 AT2G31810
fragaria_vesca	FvH4_1g00350 FvH4_1g00350
malus_domestica	MD02G1002700.v1.1 MD15G1145900.v1.1
prunus_persica	Prupe.7G268500_v2.0.a1
pyrus_communis	pycom15g13110
rosa_chinensis	RchiOBHm_Chr2g0084781
rosa_laevigata	RLG00000015638
rosa_multiflora	Rmu_sc0002352.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155820
rosa_rugosa	Rorug01G0456000 Rorug01G0456100 Rorug01G0456200
rosa_samantha	Rh2AG003300 Rh2BG004900 Rh2CG005300 Rh2DG004700
rosa_wichuraiana	Rw2G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	500, 1023
AasI	GACNNNNNNGTC	1 cut(s)	590
Acc65I	GGTACC	1 cut(s)	869
AccB1I	GGYRCC	2 cut(s)	389, 869
AccBSI	CCGCTC	1 cut(s)	722
AccII	CGCG	2 cut(s)	228, 1159
AciI	CCGC	5 cut(s)	165, 226, 279, 316, 720
AclI	AACGTT	1 cut(s)	29
AclWI	GGATC	4 cut(s)	465, 509, 608, 668
AcoI	YGGCCR	1 cut(s)	1045
AcsI	RAATTY	1 cut(s)	643
AfaI	GTAC	2 cut(s)	871, 1162
AfiI	CCNNNNNNNGG	2 cut(s)	77, 232
AgsI	TTSAA	1 cut(s)	352
AjnI	CCWGG	3 cut(s)	616, 976, 1090
AluBI	AGCT	6 cut(s)	49, 424, 433, 692, 746, 1040
AluI	AGCT	6 cut(s)	49, 424, 433, 692, 746, 1040
Alw21I	GWGCWC	1 cut(s)	913
Alw26I	GTCTC	2 cut(s)	166, 1089
AlwI	GGATC	4 cut(s)	465, 509, 608, 668
AlwNI	CAGNNNCTG	2 cut(s)	72, 776
AoxI	GGCC	1 cut(s)	1045
ApeKI	GCWGC	3 cut(s)	66, 421, 743
ApoI	RAATTY	1 cut(s)	643
ArsI	GACNNNNNNTTYG	2 cut(s)	144, 176
AseI	ATTAAT	1 cut(s)	288
Asp718I	GGTACC	1 cut(s)	869
AspLEI	GCGC	4 cut(s)	230, 408, 735, 1159
AsuHPI	GGTGA	6 cut(s)	148, 364, 559, 586, 616, 854
BalI	TGGCCA	1 cut(s)	1047
BanI	GGYRCC	2 cut(s)	389, 869
BbsI	GAAGAC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	913
BbvI	GCAGC	3 cut(s)	78, 433, 755
BccI	CCATC	1 cut(s)	1102
BceAI	ACGGC	1 cut(s)	217
BciT130I	CCWGG	3 cut(s)	618, 978, 1092
BcoDI	GTCTC	2 cut(s)	166, 1089
BfaI	CTAG	2 cut(s)	171, 1203
BfmI	CTRYAG	1 cut(s)	1118
BfoI	RGCGCY	1 cut(s)	736
BglII	AGATCT	1 cut(s)	757
BisI	GCNGC	3 cut(s)	67, 422, 744
BlsI	GCNGC	3 cut(s)	68, 423, 745
Bme1390I	CCNGG	3 cut(s)	618, 978, 1092
BmiI	GGNNCC	3 cut(s)	391, 861, 871
BmrFI	CCNGG	3 cut(s)	618, 978, 1092
BmrI	ACTGGG	1 cut(s)	913
BmsI	GCATC	2 cut(s)	186, 772
BmuI	ACTGGG	1 cut(s)	913
BpiI	GAAGAC	1 cut(s)	45
BplI	GAGNNNNNCTC	2 cut(s)	446, 478
BpmI	CTGGAG	1 cut(s)	1113
BpuEI	CTTGAG	2 cut(s)	459, 782
Bsa29I	ATCGAT	1 cut(s)	137
BsaBI	GATNNNNATC	1 cut(s)	849
BsaI	GGTCTC	1 cut(s)	1089
BsaJI	CCNNGG	4 cut(s)	231, 617, 977, 1213
BsaWI	WCCGGW	1 cut(s)	680
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 232
Bse1I	ACTGG	1 cut(s)	908
Bse8I	GATNNNNATC	1 cut(s)	849
BseBI	CCWGG	3 cut(s)	618, 978, 1092
BseCI	ATCGAT	1 cut(s)	137
BseDI	CCNNGG	4 cut(s)	231, 617, 977, 1213
BseGI	GGATG	1 cut(s)	177
BseJI	GATNNNNATC	1 cut(s)	849
BseLI	CCNNNNNNNGG	2 cut(s)	77, 232
BseMII	CTCAG	3 cut(s)	522, 594, 603
BseNI	ACTGG	1 cut(s)	908
BseRI	GAGGAG	4 cut(s)	13, 204, 256, 712
BseXI	GCAGC	3 cut(s)	78, 433, 755
Bsh1236I	CGCG	2 cut(s)	228, 1159
Bsh1285I	CGRYCG	1 cut(s)	944
BshFI	GGCC	1 cut(s)	1047
BshNI	GGYRCC	2 cut(s)	389, 869
BshVI	ATCGAT	1 cut(s)	137
BsiEI	CGRYCG	1 cut(s)	944
BsiHKAI	GWGCWC	1 cut(s)	913
BsiSI	CCGG	2 cut(s)	63, 681
BsiWI	CGTACG	1 cut(s)	1160
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	2 cut(s)	77, 232
BsmAI	GTCTC	2 cut(s)	166, 1089
BsmBI	CGTCTC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	1047
Bso31I	GGTCTC	1 cut(s)	1089
Bsp1286I	GDGCHC	1 cut(s)	913
Bsp143I	GATC	8 cut(s)	134, 457, 514, 534, 613, 660, 757, 941
BspACI	CCGC	5 cut(s)	165, 226, 279, 316, 720
BspANI	GGCC	1 cut(s)	1047
BspCNI	CTCAG	3 cut(s)	523, 593, 602
BspDI	ATCGAT	1 cut(s)	137
BspFNI	CGCG	2 cut(s)	228, 1159
BspLI	GGNNCC	3 cut(s)	391, 861, 871
BspMAI	CTGCAG	1 cut(s)	1122
BspPI	GGATC	4 cut(s)	465, 509, 608, 668
BspT107I	GGYRCC	2 cut(s)	389, 869
BspTNI	GGTCTC	1 cut(s)	1089
BsrBI	CCGCTC	1 cut(s)	722
BsrI	ACTGG	1 cut(s)	908
BssECI	CCNNGG	4 cut(s)	231, 617, 977, 1213
BssMI	GATC	8 cut(s)	134, 457, 514, 534, 613, 660, 757, 941
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	3 cut(s)	618, 978, 1092
Bst4CI	ACNGT	6 cut(s)	160, 772, 778, 874, 880, 1084
Bst6I	CTCTTC	2 cut(s)	64, 374
BstAPI	GCANNNNNTGC	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	3 cut(s)	531, 580, 589
BstDSI	CCRYGG	1 cut(s)	1213
BstF5I	GGATG	1 cut(s)	177
BstFNI	CGCG	2 cut(s)	228, 1159
BstH2I	RGCGCY	1 cut(s)	736
BstHHI	GCGC	4 cut(s)	230, 408, 735, 1159
BstKTI	GATC	8 cut(s)	137, 460, 517, 537, 616, 663, 760, 944
BstMAI	GTCTC	2 cut(s)	166, 1089
BstMBI	GATC	8 cut(s)	134, 457, 514, 534, 613, 660, 757, 941
BstMCI	CGRYCG	1 cut(s)	944
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 430
BstNI	CCWGG	3 cut(s)	618, 978, 1092
BstNSI	RCATGY	1 cut(s)	251
BstSCI	CCNGG	3 cut(s)	616, 976, 1090
BstSFI	CTRYAG	1 cut(s)	1118
BstUI	CGCG	2 cut(s)	228, 1159
BstV1I	GCAGC	3 cut(s)	78, 433, 755
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	4 cut(s)	457, 514, 613, 757
BstYI	RGATCY	4 cut(s)	457, 514, 613, 757
Bsu15I	ATCGAT	1 cut(s)	137
BsuRI	GGCC	1 cut(s)	1047
BsuTUI	ATCGAT	1 cut(s)	137
BtgI	CCRYGG	1 cut(s)	1213
BtsCI	GGATG	1 cut(s)	177
BtsI	GCAGTG	1 cut(s)	1115
BtsIMutI	CAGTG	3 cut(s)	264, 777, 1115
Cac8I	GCNNGC	1 cut(s)	249
CaiI	CAGNNNCTG	2 cut(s)	72, 776
CfoI	GCGC	4 cut(s)	230, 408, 735, 1159
ClaI	ATCGAT	1 cut(s)	137
Csp6I	GTAC	2 cut(s)	870, 1161
CspCI	CAANNNNNGTGG	2 cut(s)	552, 587
CviAII	CATG	2 cut(s)	248, 1049
CviQI	GTAC	2 cut(s)	870, 1161
DdeI	CTNAG	3 cut(s)	531, 580, 589
DpnI	GATC	8 cut(s)	136, 459, 516, 536, 615, 662, 759, 943
DpnII	GATC	8 cut(s)	134, 457, 514, 534, 613, 660, 757, 941
DrdI	GACNNNNNNGTC	1 cut(s)	590
DseDI	GACNNNNNNGTC	1 cut(s)	590
EaeI	YGGCCR	1 cut(s)	1045
Eam1104I	CTCTTC	2 cut(s)	64, 374
EarI	CTCTTC	2 cut(s)	64, 374
Eco130I	CCWWGG	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	1089
Eco32I	GATATC	2 cut(s)	577, 1208
EcoRII	CCWGG	3 cut(s)	616, 976, 1090
EcoRV	GATATC	2 cut(s)	577, 1208
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	2 cut(s)	251, 1052
FaiI	YATR	9 cut(s)	249, 500, 554, 751, 959, 1023, 1050, 1140, 1226
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	2 cut(s)	247, 1048
FauI	CCCGC	2 cut(s)	233, 309
Fnu4HI	GCNGC	3 cut(s)	67, 422, 744
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	3 cut(s)	67, 422, 744
FspBI	CTAG	2 cut(s)	171, 1203
GlaI	GCGC	4 cut(s)	229, 407, 734, 1158
GluI	GCNGC	3 cut(s)	67, 422, 744
GsuI	CTGGAG	1 cut(s)	1113
HaeII	RGCGCY	1 cut(s)	736
HaeIII	GGCC	1 cut(s)	1047
HapII	CCGG	2 cut(s)	63, 681
HhaI	GCGC	4 cut(s)	230, 408, 735, 1159
Hin1II	CATG	2 cut(s)	251, 1052
Hin6I	GCGC	4 cut(s)	228, 406, 733, 1157
HinP1I	GCGC	4 cut(s)	228, 406, 733, 1157
HincII	GTYRAC	1 cut(s)	814
HindII	GTYRAC	1 cut(s)	814
HinfI	GANTC	4 cut(s)	332, 821, 1187, 1199
HpaI	GTTAAC	1 cut(s)	814
HpaII	CCGG	2 cut(s)	63, 681
HphI	GGTGA	6 cut(s)	148, 364, 559, 586, 616, 854
Hpy166II	GTNNAC	3 cut(s)	488, 814, 935
Hpy188I	TCNGA	7 cut(s)	88, 294, 519, 583, 665, 826, 1032
Hpy188III	TCNNGA	4 cut(s)	132, 755, 761, 1203
Hpy8I	GTNNAC	3 cut(s)	488, 814, 935
HpyAV	CCTTC	5 cut(s)	109, 114, 796, 873, 1008
HpyCH4III	ACNGT	6 cut(s)	160, 772, 778, 874, 880, 1084
HpyCH4IV	ACGT	2 cut(s)	29, 484
HpyCH4V	TGCA	7 cut(s)	311, 512, 637, 791, 1052, 1115, 1120
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 430
HpyF3I	CTNAG	3 cut(s)	531, 580, 589
HpySE526I	ACGT	2 cut(s)	29, 484
Hsp92II	CATG	2 cut(s)	251, 1052
HspAI	GCGC	4 cut(s)	228, 406, 733, 1157
KpnI	GGTACC	1 cut(s)	873
KspAI	GTTAAC	1 cut(s)	814
Kzo9I	GATC	8 cut(s)	134, 457, 514, 534, 613, 660, 757, 941
LmnI	GCTCC	2 cut(s)	727, 859
Lsp1109I	GCAGC	3 cut(s)	78, 433, 755
LweI	GCATC	2 cut(s)	186, 772
MaeI	CTAG	2 cut(s)	171, 1203
MaeII	ACGT	2 cut(s)	29, 484
MaeIII	GTNAC	7 cut(s)	143, 320, 521, 592, 604, 772, 874
MalI	GATC	8 cut(s)	136, 459, 516, 536, 615, 662, 759, 943
MbiI	CCGCTC	1 cut(s)	722
MboI	GATC	8 cut(s)	134, 457, 514, 534, 613, 660, 757, 941
MboII	GAAGA	5 cut(s)	45, 51, 361, 825, 1179
MflI	RGATCY	4 cut(s)	457, 514, 613, 757
MhlI	GDGCHC	1 cut(s)	913
MlsI	TGGCCA	1 cut(s)	1047
MluCI	AATT	4 cut(s)	567, 643, 669, 1170
MluNI	TGGCCA	1 cut(s)	1047
MlyI	GAGTC	1 cut(s)	1196
MmeI	TCCRAC	1 cut(s)	242
Mox20I	TGGCCA	1 cut(s)	1047
MscI	TGGCCA	1 cut(s)	1047
MseI	TTAA	6 cut(s)	288, 426, 647, 813, 894, 915
MslI	CAYNNNNRTG	1 cut(s)	602
Msp20I	TGGCCA	1 cut(s)	1047
MspA1I	CMGCKG	1 cut(s)	49
MspI	CCGG	2 cut(s)	63, 681
MspR9I	CCNGG	3 cut(s)	618, 978, 1092
MvaI	CCWGG	3 cut(s)	618, 978, 1092
MvnI	CGCG	2 cut(s)	228, 1159
MwoI	GCNNNNNNNGC	2 cut(s)	72, 430
NdeII	GATC	8 cut(s)	134, 457, 514, 534, 613, 660, 757, 941
NlaIII	CATG	2 cut(s)	251, 1052
NlaIV	GGNNCC	3 cut(s)	391, 861, 871
NmuCI	GTSAC	4 cut(s)	143, 592, 604, 772
NspI	RCATGY	1 cut(s)	251
PaeI	GCATGC	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PfeI	GAWTC	3 cut(s)	332, 821, 1199
Pfl23II	CGTACG	1 cut(s)	1160
PfoI	TCCNGGA	1 cut(s)	1090
PkrI	GCNGC	3 cut(s)	68, 423, 745
Ple19I	CGATCG	1 cut(s)	944
PleI	GAGTC	1 cut(s)	1195
PpsI	GAGTC	1 cut(s)	1195
PshBI	ATTAAT	1 cut(s)	288
PsiI	TTATAA	2 cut(s)	500, 1023
Psp1406I	AACGTT	1 cut(s)	29
Psp6I	CCWGG	3 cut(s)	616, 976, 1090
PspGI	CCWGG	3 cut(s)	616, 976, 1090
PspLI	CGTACG	1 cut(s)	1160
PspN4I	GGNNCC	3 cut(s)	391, 861, 871
PsrI	GAACNNNNNNTAC	2 cut(s)	957, 989
PstI	CTGCAG	1 cut(s)	1122
PstNI	CAGNNNCTG	2 cut(s)	72, 776
PsuI	RGATCY	4 cut(s)	457, 514, 613, 757
PvuI	CGATCG	1 cut(s)	944
PvuII	CAGCTG	1 cut(s)	49
RsaI	GTAC	2 cut(s)	871, 1162
RsaNI	GTAC	2 cut(s)	870, 1161
RseI	CAYNNNNRTG	1 cut(s)	602
SaqAI	TTAA	6 cut(s)	288, 426, 647, 813, 894, 915
SatI	GCNGC	3 cut(s)	67, 422, 744
Sau3AI	GATC	8 cut(s)	134, 457, 514, 534, 613, 660, 757, 941
SchI	GAGTC	1 cut(s)	1196
ScrFI	CCNGG	3 cut(s)	618, 978, 1092
SduI	GDGCHC	1 cut(s)	913
SfaNI	GCATC	2 cut(s)	186, 772
SfcI	CTRYAG	1 cut(s)	1118
SmiMI	CAYNNNNRTG	1 cut(s)	602
SmlI	CTYRAG	2 cut(s)	474, 761
SmoI	CTYRAG	2 cut(s)	474, 761
SphI	GCATGC	1 cut(s)	251
Sse9I	AATT	4 cut(s)	567, 643, 669, 1170
SsiI	CCGC	5 cut(s)	165, 226, 279, 316, 720
SspMI	CTAG	2 cut(s)	171, 1203
StyD4I	CCNGG	3 cut(s)	616, 976, 1090
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	6 cut(s)	160, 772, 778, 874, 880, 1084
TaiI	ACGT	2 cut(s)	32, 487
TaqI	TCGA	5 cut(s)	131, 137, 330, 940, 1012
TasI	AATT	4 cut(s)	567, 643, 669, 1170
TfiI	GAWTC	3 cut(s)	332, 821, 1199
Tru1I	TTAA	6 cut(s)	288, 426, 647, 813, 894, 915
Tru9I	TTAA	6 cut(s)	288, 426, 647, 813, 894, 915
TscAI	CASTG	3 cut(s)	264, 777, 1122
TseFI	GTSAC	4 cut(s)	143, 592, 604, 772
TseI	GCWGC	3 cut(s)	66, 421, 743
Tsp45I	GTSAC	4 cut(s)	143, 592, 604, 772
TspDTI	ATGAA	2 cut(s)	96, 738
TspGWI	ACGGA	1 cut(s)	1202
TspRI	CASTG	3 cut(s)	264, 777, 1122
VspI	ATTAAT	1 cut(s)	288
XapI	RAATTY	1 cut(s)	643
XbaI	TCTAGA	1 cut(s)	1202
XceI	RCATGY	1 cut(s)	251
XspI	CTAG	2 cut(s)	171, 1203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.