Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011760

Physical Location & Seq

Genomic Coordinates Reverse (-)

9027393 .. 9029936

Gene Structure 2544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g13200.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGGTGGAAAAGAATGAGGAGACTCCAACAAAGCCAAAGCTGAAACCTTTACATTGGGATAAAGTTAGGGCCAGCTCAGACCGTGCCATGGTGTGGGATCACTTGAAATCCAGCTCCTTTCAGTTGAATGAGGAGATGATTGAGACATTGTTTATGGTAAACAATTCGACTTTGACACCGAATGACAATGTCCGGCGACAGATTCTTTCTTCTGTGAATCAGGAGAACCGCGTGCTTGATCCGAAGAAGTCTCAGAACATTGCAATTTTGTTGAGGGCGCTTAATGTTACCATTGATGAAGTCTGCGAAGCGCTTTTGGAAGGTAATTCAGATGGACTTGGGACAGAACTTCTCGAAAGTCTATTAAAGATGGCTCCAACCAAAGAGGAAGAACGGAAACTAAGAGAGTTCAAAGATGAATCACCGTTTAAGCTTGGCCCAGCTGAGAAATTTCTGAAGGCGGTGCTCGATATACCTTTCGCGTTTAAGAGGGTGGATGCAATGCTCTACATTGCCAATTTTGATTCAGAAGTAGATTATCTGAGAAGGTCTTTCGAGACTGTGGAGGCAGCTTGCGAAGAATTAAGGAACAGCAAAATGTTCCTGAAGCTTCTTGAAGCGGTGCTCAAAACTGGGAACCGGATGAATGTTGGCACTAACCGTGGCGATGCCCATGCCTTCAAGCTAGACACACTTCTCAAGCTTGTAGATGTCAAGGGAACAGATGGGAAAACTACTCTCTTACATTTTGTTGTGCAGGAAATCATCAGAGCTGAAGGTTCTTGTCTCTCTGGCATGAATCAGAATCAAATAGCTGAGGAAAGCCAACAAACTTCCTTCCGGGACGATGTTGAGTTTAGGAAGCTTGGCCTGCAAGTTGTTTCAGGATTGAGTGGGGAGCTCACCAGTGTAAAGAAGGCTGCTACGATGGATTCAGATGTACTCAGCAATGAAGTTGCAAAAATTGCTGCTGGAATTACGAAAATAGCAGAAGTTGTGAAATTGATCGAAGGCAGTGCATCGAAGGAGAGTAGCAAAAAGTTCTTCGAGTCCATGAGCGGGTTCTTGAACAAGGCAGGGGAAGAAATTGTAAGGATTCAAGCTCAAGAGAAAGTTGCATTCTCTATGGTAAAGGACTTAACAGAATATTTCCATGGGAACTCAGTTAGGGAAGAAGCTCATCCCTTCCGAATTTTCACGGTGGTGAGAGATTTTCTTTCTATTCTAGATCAGGCGTGCAAGGTAGTCGGAAAAGTTAATGAAAGAACTATAGTTGGGTCAGCCCGTCAATTCCCCAGGGTTCCAAATGCAACCTTTCCACCGTTTTTTCCAGGGCTCGGTGCAAAGCAGCATTATGGTTCCTCGGATGATGAAACCGCGCTTCGACATAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010638 GO:0010639 GO:0016020 GO:0016043 GO:0030029 GO:0030036 GO:0030312 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0030838 GO:0031333 GO:0031334 GO:0032271 GO:0032272 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044089 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051015 GO:0051016 GO:0051128 GO:0051129 GO:0051130 GO:0051493 GO:0051494 GO:0051495 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0097435 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04320 map04320

Pfam Domains

Protein Families

FH2

Protein Analysis

466

Amino Acids

52.01

Weight (kDa)

6.03

Isoelectric Point (pI)

37.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43800
fragaria_vesca	FvH4_1g00460
malus_domestica	MD02G1003800.v1.1 MD15G1147100.v1.1
prunus_persica	Prupe.7G267500_v2.0.a1
pyrus_communis	pycom02g00230 pycom15g13200
rosa_chinensis	RchiOBHm_Chr2g0084971
rosa_laevigata	RLG00000015652
rosa_multiflora	Rmu_co8206718.1_g000001 Rmu_sc0017508.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155670
rosa_rugosa	Rorug01G0457400
rosa_samantha	Rh2AG005000 Rh2BG006200 Rh2BG300200 Rh2CG006800 Rh2DG006600
rosa_wichuraiana	Rw2G000500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	93
AccBSI	CCGCTC	1 cut(s)	1059
AccII	CGCG	3 cut(s)	231, 482, 1379
AciI	CCGC	5 cut(s)	229, 461, 620, 1059, 1377
AclWI	GGATC	2 cut(s)	105, 233
AcsI	RAATTY	2 cut(s)	449, 1191
AcuI	CTGAAG	3 cut(s)	476, 626, 795
AfaI	GTAC	1 cut(s)	942
AfeI	AGCGCT	1 cut(s)	312
AfiI	CCNNNNNNNGG	4 cut(s)	88, 93, 1059, 1337
AgsI	TTSAA	7 cut(s)	106, 127, 412, 617, 682, 1069, 1100
AjnI	CCWGG	2 cut(s)	1295, 1330
AleI	CACNNNNGTG	1 cut(s)	1202
Alw21I	GWGCWC	3 cut(s)	468, 627, 903
Alw26I	GTCTC	5 cut(s)	14, 137, 255, 551, 791
AlwI	GGATC	2 cut(s)	105, 233
Aor51HI	AGCGCT	1 cut(s)	312
AoxI	GGCC	3 cut(s)	69, 436, 868
ApeKI	GCWGC	4 cut(s)	569, 920, 968, 1348
ApoI	RAATTY	2 cut(s)	449, 1191
AspLEI	GCGC	3 cut(s)	280, 313, 1381
AspS9I	GGNCC	2 cut(s)	69, 437
AsuC2I	CCSGG	1 cut(s)	842
AsuHPI	GGTGA	3 cut(s)	414, 895, 1216
BanII	GRGCYC	2 cut(s)	903, 1338
Bbv12I	GWGCWC	3 cut(s)	468, 627, 903
BbvCI	CCTCAGC	1 cut(s)	816
BbvI	GCAGC	4 cut(s)	581, 907, 955, 1360
BccI	CCATC	4 cut(s)	326, 364, 719, 922
BcgI	CGANNNNNNTGC	6 cut(s)	656, 690, 998, 1032, 1228, 1262
BciT130I	CCWGG	2 cut(s)	1297, 1332
BcnI	CCSGG	1 cut(s)	842
BcoDI	GTCTC	5 cut(s)	14, 137, 255, 551, 791
BfaI	CTAG	2 cut(s)	686, 1226
BfmI	CTRYAG	1 cut(s)	1269
BfoI	RGCGCY	2 cut(s)	281, 314
BisI	GCNGC	4 cut(s)	570, 921, 969, 1349
BlsI	GCNGC	4 cut(s)	571, 922, 970, 1350
Bme1390I	CCNGG	3 cut(s)	842, 1297, 1332
BmgT120I	GGNCC	2 cut(s)	69, 437
BmiI	GGNNCC	4 cut(s)	375, 638, 1302, 1360
BmrFI	CCNGG	3 cut(s)	842, 1297, 1332
BmrI	ACTGGG	1 cut(s)	642
BmsI	GCATC	3 cut(s)	487, 658, 1028
BmuI	ACTGGG	1 cut(s)	642
Bpu10I	CCTNAGC	1 cut(s)	816
BpuEI	CTTGAG	2 cut(s)	683, 1089
BpuMI	CCSGG	1 cut(s)	842
BsaJI	CCNNGG	7 cut(s)	87, 661, 1153, 1295, 1296, 1331, 1362
BsaWI	WCCGGW	1 cut(s)	639
Bsc4I	CCNNNNNNNGG	4 cut(s)	88, 93, 1059, 1337
Bse1I	ACTGG	2 cut(s)	637, 906
Bse3DI	GCAATG	4 cut(s)	258, 507, 510, 955
BseBI	CCWGG	2 cut(s)	1297, 1332
BseDI	CCNNGG	7 cut(s)	87, 661, 1153, 1295, 1296, 1331, 1362
BseGI	GGATG	4 cut(s)	502, 648, 1180, 1372
BseLI	CCNNNNNNNGG	4 cut(s)	88, 93, 1059, 1337
BseMI	GCAATG	4 cut(s)	258, 507, 510, 955
BseMII	CTCAG	7 cut(s)	90, 266, 435, 533, 807, 958, 1176
BseNI	ACTGG	2 cut(s)	637, 906
BseRI	GAGGAG	2 cut(s)	32, 146
BseXI	GCAGC	4 cut(s)	581, 907, 955, 1360
BseYI	CCCAGC	1 cut(s)	439
BsgI	GTGCAG	1 cut(s)	776
Bsh1236I	CGCG	3 cut(s)	231, 482, 1379
BshFI	GGCC	3 cut(s)	71, 438, 870
BsiHKAI	GWGCWC	3 cut(s)	468, 627, 903
BsiSI	CCGG	3 cut(s)	193, 640, 841
BslFI	GGGAC	2 cut(s)	355, 857
BslI	CCNNNNNNNGG	4 cut(s)	88, 93, 1059, 1337
BsmAI	GTCTC	5 cut(s)	14, 137, 255, 551, 791
BsmFI	GGGAC	2 cut(s)	355, 857
BsmI	GAATGC	1 cut(s)	1118
BsnI	GGCC	3 cut(s)	71, 438, 870
Bsp1286I	GDGCHC	4 cut(s)	468, 627, 903, 1338
Bsp143I	GATC	4 cut(s)	97, 238, 1005, 1228
Bsp19I	CCATGG	2 cut(s)	87, 1153
BspACI	CCGC	5 cut(s)	229, 461, 620, 1059, 1377
BspANI	GGCC	3 cut(s)	71, 438, 870
BspCNI	CTCAG	7 cut(s)	89, 265, 436, 534, 808, 957, 1175
BspFNI	CGCG	3 cut(s)	231, 482, 1379
BspLI	GGNNCC	4 cut(s)	375, 638, 1302, 1360
BspPI	GGATC	2 cut(s)	105, 233
BsrBI	CCGCTC	1 cut(s)	1059
BsrDI	GCAATG	4 cut(s)	258, 507, 510, 955
BsrI	ACTGG	2 cut(s)	637, 906
BssECI	CCNNGG	7 cut(s)	87, 661, 1153, 1295, 1296, 1331, 1362
BssMI	GATC	4 cut(s)	97, 238, 1005, 1228
BssT1I	CCWWGG	2 cut(s)	87, 1153
Bst2UI	CCWGG	2 cut(s)	1297, 1332
Bst4CI	ACNGT	6 cut(s)	83, 426, 562, 662, 1201, 1323
BstAPI	GCANNNNNTGC	1 cut(s)	965
BstC8I	GCNNGC	5 cut(s)	73, 233, 574, 872, 1237
BstDEI	CTNAG	8 cut(s)	76, 252, 401, 444, 542, 816, 944, 1162
BstDSI	CCRYGG	3 cut(s)	87, 661, 1153
BstF5I	GGATG	4 cut(s)	502, 648, 1180, 1372
BstFNI	CGCG	3 cut(s)	231, 482, 1379
BstH2I	RGCGCY	2 cut(s)	281, 314
BstHHI	GCGC	3 cut(s)	280, 313, 1381
BstKTI	GATC	4 cut(s)	100, 241, 1008, 1231
BstMAI	GTCTC	5 cut(s)	14, 137, 255, 551, 791
BstMBI	GATC	4 cut(s)	97, 238, 1005, 1228
BstMWI	GCNNNNNNNGC	2 cut(s)	871, 965
BstNI	CCWGG	2 cut(s)	1297, 1332
BstSCI	CCNGG	3 cut(s)	840, 1295, 1330
BstSFI	CTRYAG	1 cut(s)	1269
BstUI	CGCG	3 cut(s)	231, 482, 1379
BstV1I	GCAGC	4 cut(s)	581, 907, 955, 1360
BsuRI	GGCC	3 cut(s)	71, 438, 870
BtgI	CCRYGG	3 cut(s)	87, 661, 1153
BtgZI	GCGATG	1 cut(s)	681
BtsCI	GGATG	4 cut(s)	502, 648, 1180, 1372
BtsI	GCAGTG	1 cut(s)	1021
BtsIMutI	CAGTG	2 cut(s)	913, 1021
Cac8I	GCNNGC	5 cut(s)	73, 233, 574, 872, 1237
CfoI	GCGC	3 cut(s)	280, 313, 1381
Cfr13I	GGNCC	2 cut(s)	69, 437
Csp6I	GTAC	1 cut(s)	941
CviAII	CATG	5 cut(s)	88, 674, 796, 1054, 1154
CviQI	GTAC	1 cut(s)	941
DdeI	CTNAG	8 cut(s)	76, 252, 401, 444, 542, 816, 944, 1162
DpnI	GATC	4 cut(s)	99, 240, 1007, 1230
DpnII	GATC	4 cut(s)	97, 238, 1005, 1228
Ecl136II	GAGCTC	1 cut(s)	901
Eco130I	CCWWGG	2 cut(s)	87, 1153
Eco24I	GRGCYC	2 cut(s)	903, 1338
Eco47III	AGCGCT	1 cut(s)	312
Eco53kI	GAGCTC	1 cut(s)	901
Eco57I	CTGAAG	3 cut(s)	476, 626, 795
EcoICRI	GAGCTC	1 cut(s)	901
EcoRII	CCWGG	2 cut(s)	1295, 1330
EcoT14I	CCWWGG	2 cut(s)	87, 1153
EcoT38I	GRGCYC	2 cut(s)	903, 1338
ErhI	CCWWGG	2 cut(s)	87, 1153
FaeI	CATG	5 cut(s)	91, 677, 799, 1057, 1157
FaqI	GGGAC	2 cut(s)	355, 857
FatI	CATG	5 cut(s)	87, 673, 795, 1053, 1153
FauI	CCCGC	1 cut(s)	1052
Fnu4HI	GCNGC	4 cut(s)	570, 921, 969, 1349
FokI	GGATG	4 cut(s)	509, 655, 1167, 1379
FriOI	GRGCYC	2 cut(s)	903, 1338
Fsp4HI	GCNGC	4 cut(s)	570, 921, 969, 1349
FspBI	CTAG	2 cut(s)	686, 1226
GlaI	GCGC	3 cut(s)	279, 312, 1380
GluI	GCNGC	4 cut(s)	570, 921, 969, 1349
GsaI	CCCAGC	1 cut(s)	443
HaeII	RGCGCY	2 cut(s)	281, 314
HaeIII	GGCC	3 cut(s)	71, 438, 870
HapII	CCGG	3 cut(s)	193, 640, 841
HhaI	GCGC	3 cut(s)	280, 313, 1381
Hin1II	CATG	5 cut(s)	91, 677, 799, 1057, 1157
Hin6I	GCGC	3 cut(s)	278, 311, 1379
HinP1I	GCGC	3 cut(s)	278, 311, 1379
HindIII	AAGCTT	4 cut(s)	431, 608, 701, 863
HpaII	CCGG	3 cut(s)	193, 640, 841
HphI	GGTGA	3 cut(s)	414, 895, 1216
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188III	TCNNGA	9 cut(s)	221, 353, 556, 604, 614, 885, 1066, 1106, 1226
Hpy8I	GTNNAC	1 cut(s)	160
HpyCH4III	ACNGT	6 cut(s)	83, 426, 562, 662, 1201, 1323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	871, 965
HpyF3I	CTNAG	8 cut(s)	76, 252, 401, 444, 542, 816, 944, 1162
Hsp92II	CATG	5 cut(s)	91, 677, 799, 1057, 1157
HspAI	GCGC	3 cut(s)	278, 311, 1379
Kzo9I	GATC	4 cut(s)	97, 238, 1005, 1228
LmnI	GCTCC	3 cut(s)	119, 379, 898
Lsp1109I	GCAGC	4 cut(s)	581, 907, 955, 1360
LweI	GCATC	3 cut(s)	487, 658, 1028
MaeI	CTAG	2 cut(s)	686, 1226
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	4 cut(s)	99, 240, 1007, 1230
MbiI	CCGCTC	1 cut(s)	1059
MboI	GATC	4 cut(s)	97, 238, 1005, 1228
MboII	GAAGA	7 cut(s)	201, 256, 401, 590, 1036, 1094, 1184
MhlI	GDGCHC	4 cut(s)	468, 627, 903, 1338
MlyI	GAGTC	2 cut(s)	16, 1058
MmeI	TCCRAC	3 cut(s)	50, 401, 1228
MnlI	CCTC	8 cut(s)	10, 124, 267, 379, 483, 559, 811, 1372
MseI	TTAA	7 cut(s)	282, 365, 429, 486, 584, 1139, 1257
MslI	CAYNNNNRTG	1 cut(s)	1202
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	3 cut(s)	193, 640, 841
MspR9I	CCNGG	3 cut(s)	842, 1297, 1332
Mva1269I	GAATGC	1 cut(s)	1118
MvaI	CCWGG	2 cut(s)	1297, 1332
MvnI	CGCG	3 cut(s)	231, 482, 1379
MwoI	GCNNNNNNNGC	2 cut(s)	871, 965
NciI	CCSGG	1 cut(s)	842
NcoI	CCATGG	2 cut(s)	87, 1153
NdeII	GATC	4 cut(s)	97, 238, 1005, 1228
NlaIII	CATG	5 cut(s)	91, 677, 799, 1057, 1157
NlaIV	GGNNCC	4 cut(s)	375, 638, 1302, 1360
OliI	CACNNNNGTG	1 cut(s)	1202
PasI	CCCWGGG	1 cut(s)	1296
PctI	GAATGC	1 cut(s)	1118
PfeI	GAWTC	8 cut(s)	202, 217, 419, 524, 799, 805, 932, 1096
PflFI	GACNNNGTC	1 cut(s)	188
PflMI	CCANNNNNTGG	1 cut(s)	93
PfoI	TCCNGGA	1 cut(s)	840
PkrI	GCNGC	4 cut(s)	571, 922, 970, 1350
PleI	GAGTC	2 cut(s)	16, 1057
PpsI	GAGTC	2 cut(s)	16, 1057
Psp124BI	GAGCTC	1 cut(s)	903
Psp6I	CCWGG	2 cut(s)	1295, 1330
PspFI	CCCAGC	1 cut(s)	439
PspGI	CCWGG	2 cut(s)	1295, 1330
PspN4I	GGNNCC	4 cut(s)	375, 638, 1302, 1360
PspPI	GGNCC	2 cut(s)	69, 437
PsyI	GACNNNGTC	1 cut(s)	188
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	1 cut(s)	942
RsaNI	GTAC	1 cut(s)	941
RseI	CAYNNNNRTG	1 cut(s)	1202
SacI	GAGCTC	1 cut(s)	903
SaqAI	TTAA	7 cut(s)	282, 365, 429, 486, 584, 1139, 1257
SatI	GCNGC	4 cut(s)	570, 921, 969, 1349
Sau3AI	GATC	4 cut(s)	97, 238, 1005, 1228
Sau96I	GGNCC	2 cut(s)	69, 437
SchI	GAGTC	2 cut(s)	16, 1058
ScrFI	CCNGG	3 cut(s)	842, 1297, 1332
SduI	GDGCHC	4 cut(s)	468, 627, 903, 1338
SfaNI	GCATC	3 cut(s)	487, 658, 1028
SfcI	CTRYAG	1 cut(s)	1269
SmiMI	CAYNNNNRTG	1 cut(s)	1202
SmlI	CTYRAG	2 cut(s)	698, 1104
SmoI	CTYRAG	2 cut(s)	698, 1104
SsiI	CCGC	5 cut(s)	229, 461, 620, 1059, 1377
SspI	AATATT	1 cut(s)	1148
SspMI	CTAG	2 cut(s)	686, 1226
SstI	GAGCTC	1 cut(s)	903
StyD4I	CCNGG	3 cut(s)	840, 1295, 1330
StyI	CCWWGG	2 cut(s)	87, 1153
TaaI	ACNGT	6 cut(s)	83, 426, 562, 662, 1201, 1323
TaqI	TCGA	8 cut(s)	167, 354, 468, 555, 1008, 1022, 1047, 1384
TatI	WGTACW	1 cut(s)	940
TfiI	GAWTC	8 cut(s)	202, 217, 419, 524, 799, 805, 932, 1096
Tru1I	TTAA	7 cut(s)	282, 365, 429, 486, 584, 1139, 1257
Tru9I	TTAA	7 cut(s)	282, 365, 429, 486, 584, 1139, 1257
TscAI	CASTG	2 cut(s)	913, 1021
TseI	GCWGC	4 cut(s)	569, 920, 968, 1348
TspDTI	ATGAA	7 cut(s)	312, 432, 659, 812, 966, 1275, 1386
TspGWI	ACGGA	1 cut(s)	409
TspRI	CASTG	2 cut(s)	913, 1021
Tth111I	GACNNNGTC	1 cut(s)	188
Van91I	CCANNNNNTGG	1 cut(s)	93
XapI	RAATTY	2 cut(s)	449, 1191
XbaI	TCTAGA	1 cut(s)	1225
XspI	CTAG	2 cut(s)	686, 1226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.