Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8206718.1

Orthogroup ID

OG0011760

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 720

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8206718.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

aagcgtcgccaccacgagcaatgccagctccaagttcggggtttcaagccggtctggctcgccgtatcagaagctgggctcgccggagctgacgccgcttcctccacttcccaaggacaatttcatacgacggagctacaagcacgaactgggttccgacgatgatgaaggggaagacgagttcttttctccgagaggctcttctgcgagtccgaaaaacgtcgccggagcaagctcagatagagtgctcaaggctgtagaaggcgacaactttggaagcaggagcttcaattcaagaactgcatcatacccatgttcaaaatctgcttctccagtaagttctgtgtccaacactgtctcaccacagttgaacttcagtcccacaagcttgaaatcgaactcgccggactctgtgatcaatttcatggcaccgtctcggcctgctccgattccggtggcagtgtcccggtcattgtctgcgtcgtctactttatcagagagagtttcagggaatgtgcagagttcccctgactttttgacgcagatgaagcagtctctagtgagaaacaatagcgctcctaagcggtttgttccaataagactgcctccgccgcctcctccaccgccaccacccaggtattgggaagcttcagggactccggtggcgaatgcaggtccacctgttcttgtcacgccttccggggctcctgtgtttgagaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010638 GO:0010639 GO:0016020 GO:0016043 GO:0030029 GO:0030036 GO:0030312 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0030838 GO:0031333 GO:0031334 GO:0032271 GO:0032272 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044089 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051015 GO:0051016 GO:0051128 GO:0051129 GO:0051130 GO:0051493 GO:0051494 GO:0051495 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0097435 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04320 map04320

Pfam Domains

Protein Families

FH2

Protein Analysis

239

Amino Acids

25.14

Weight (kDa)

9.62

Isoelectric Point (pI)

70.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43800
fragaria_vesca	FvH4_1g00460
malus_domestica	MD02G1003800.v1.1 MD15G1147100.v1.1
prunus_persica	Prupe.7G267500_v2.0.a1
pyrus_communis	pycom02g00230 pycom15g13200
rosa_chinensis	RchiOBHm_Chr2g0084971
rosa_laevigata	RLG00000015652
rosa_multiflora	Rmu_co8206718.1_g000001 Rmu_sc0017508.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155670
rosa_rugosa	Rorug01G0457400
rosa_samantha	Rh2AG005000 Rh2BG006200 Rh2BG300200 Rh2CG006800 Rh2DG006600
rosa_wichuraiana	Rw2G000500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	663
AccB1I	GGYRCC	1 cut(s)	428
AccB7I	CCANNNNNTGG	1 cut(s)	640
AccI	GTMKAC	1 cut(s)	486
AciI	CCGC	5 cut(s)	96, 584, 609, 612, 624
AcuI	CTGAAG	2 cut(s)	359, 634
AcyI	GRCGYC	1 cut(s)	93
AfeI	AGCGCT	1 cut(s)	575
AfiI	CCNNNNNNNGG	2 cut(s)	37, 640
AgsI	TTSAA	6 cut(s)	46, 290, 295, 319, 371, 392
AjnI	CCWGG	1 cut(s)	633
AjuI	GAANNNNNNNTTGG	2 cut(s)	105, 137
AloI	GAACNNNNNNTCC	2 cut(s)	165, 197
AluBI	AGCT	8 cut(s)	28, 74, 89, 136, 235, 286, 388, 648
AluI	AGCT	8 cut(s)	28, 74, 89, 136, 235, 286, 388, 648
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	3 cut(s)	362, 439, 559
AlwNI	CAGNNNCTG	1 cut(s)	74
Aor51HI	AGCGCT	1 cut(s)	575
AoxI	GGCC	1 cut(s)	438
AspLEI	GCGC	1 cut(s)	576
AspS9I	GGNCC	1 cut(s)	675
AsuC2I	CCSGG	2 cut(s)	467, 701
AsuHPI	GGTGA	1 cut(s)	352
AvaII	GGWCC	1 cut(s)	675
BanI	GGYRCC	1 cut(s)	428
BanII	GRGCYC	2 cut(s)	81, 707
BauI	CACGAG	1 cut(s)	14
BbsI	GAAGAC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	250
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	635
BclI	TGATCA	1 cut(s)	415
BcnI	CCSGG	2 cut(s)	467, 701
BcoDI	GTCTC	3 cut(s)	362, 439, 559
BfaI	CTAG	1 cut(s)	558
BfmI	CTRYAG	1 cut(s)	256
BfoI	RGCGCY	1 cut(s)	577
BfuAI	ACCTGC	1 cut(s)	663
BglI	GCCNNNNNGGC	1 cut(s)	55
BisI	GCNGC	2 cut(s)	96, 612
BlsI	GCNGC	2 cut(s)	97, 613
Bme1390I	CCNGG	3 cut(s)	467, 635, 701
Bme18I	GGWCC	1 cut(s)	675
BmgT120I	GGNCC	1 cut(s)	675
BmiI	GGNNCC	3 cut(s)	155, 430, 706
BmrFI	CCNGG	3 cut(s)	467, 635, 701
BmrI	ACTGGG	1 cut(s)	159
BmsI	GCATC	1 cut(s)	312
BmuI	ACTGGG	1 cut(s)	159
BpiI	GAAGAC	1 cut(s)	181
BpmI	CTGGAG	1 cut(s)	316
Bpu10I	CCTNAGC	1 cut(s)	580
BpuEI	CTTGAG	1 cut(s)	234
BpuMI	CCSGG	2 cut(s)	467, 701
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	3 cut(s)	112, 633, 700
BsaWI	WCCGGW	2 cut(s)	452, 659
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 640
Bse118I	RCCGGY	1 cut(s)	49
Bse1I	ACTGG	2 cut(s)	154, 333
Bse3DI	GCAATG	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	635
BseDI	CCNNGG	3 cut(s)	112, 633, 700
BseLI	CCNNNNNNNGG	2 cut(s)	37, 640
BseMI	GCAATG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	250
BseNI	ACTGG	2 cut(s)	154, 333
BseRI	GAGGAG	1 cut(s)	607
BseYI	CCCAGC	1 cut(s)	74
BsgI	GTGCAG	1 cut(s)	537
BshFI	GGCC	1 cut(s)	440
BshNI	GGYRCC	1 cut(s)	428
BsiHKAI	GWGCWC	1 cut(s)	250
BsiSI	CCGG	8 cut(s)	50, 84, 226, 405, 453, 467, 660, 700
BslFI	GGGAC	3 cut(s)	364, 449, 668
BslI	CCNNNNNNNGG	2 cut(s)	37, 640
BsmAI	GTCTC	3 cut(s)	362, 439, 559
BsmBI	CGTCTC	1 cut(s)	439
BsmFI	GGGAC	3 cut(s)	364, 449, 668
BsmI	GAATGC	1 cut(s)	674
BsnI	GGCC	1 cut(s)	440
Bsp1286I	GDGCHC	3 cut(s)	81, 250, 707
Bsp143I	GATC	1 cut(s)	415
BspACI	CCGC	5 cut(s)	96, 584, 609, 612, 624
BspANI	GGCC	1 cut(s)	440
BspCNI	CTCAG	1 cut(s)	249
BspLI	GGNNCC	3 cut(s)	155, 430, 706
BspMI	ACCTGC	1 cut(s)	663
BspQI	GCTCTTC	1 cut(s)	206
BspT107I	GGYRCC	1 cut(s)	428
BsrDI	GCAATG	1 cut(s)	26
BsrFI	RCCGGY	1 cut(s)	49
BsrI	ACTGG	2 cut(s)	154, 333
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	3 cut(s)	112, 633, 700
BssMI	GATC	1 cut(s)	415
BssNI	GRCGYC	1 cut(s)	93
BssSI	CACGAG	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	112
Bst2BI	CACGAG	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	635
Bst4CI	ACNGT	3 cut(s)	356, 367, 433
Bst6I	CTCTTC	1 cut(s)	206
BstACI	GRCGYC	1 cut(s)	93
BstC8I	GCNNGC	5 cut(s)	26, 60, 81, 233, 442
BstDEI	CTNAG	2 cut(s)	236, 580
BstH2I	RGCGCY	1 cut(s)	577
BstHHI	GCGC	1 cut(s)	576
BstKTI	GATC	1 cut(s)	418
BstMAI	GTCTC	3 cut(s)	362, 439, 559
BstMBI	GATC	1 cut(s)	415
BstMWI	GCNNNNNNNGC	6 cut(s)	25, 55, 80, 95, 548, 611
BstNI	CCWGG	1 cut(s)	635
BstSCI	CCNGG	3 cut(s)	465, 633, 699
BstSFI	CTRYAG	1 cut(s)	256
BstV2I	GAAGAC	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	440
BtsI	GCAGTG	1 cut(s)	466
BtsIMutI	CAGTG	2 cut(s)	352, 466
BveI	ACCTGC	1 cut(s)	663
Cac8I	GCNNGC	5 cut(s)	26, 60, 81, 233, 442
CaiI	CAGNNNCTG	1 cut(s)	74
CfoI	GCGC	1 cut(s)	576
Cfr10I	RCCGGY	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	675
CseI	GACGC	3 cut(s)	101, 469, 548
CviAII	CATG	2 cut(s)	313, 425
DdeI	CTNAG	2 cut(s)	236, 580
DpnI	GATC	1 cut(s)	417
DpnII	GATC	1 cut(s)	415
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
EciI	GGCGGA	1 cut(s)	598
Eco130I	CCWWGG	1 cut(s)	112
Eco24I	GRGCYC	2 cut(s)	81, 707
Eco47I	GGWCC	1 cut(s)	675
Eco47III	AGCGCT	1 cut(s)	575
Eco57I	CTGAAG	2 cut(s)	359, 634
EcoRII	CCWGG	1 cut(s)	633
EcoT14I	CCWWGG	1 cut(s)	112
EcoT38I	GRGCYC	2 cut(s)	81, 707
ErhI	CCWWGG	1 cut(s)	112
Esp3I	CGTCTC	1 cut(s)	439
FaeI	CATG	2 cut(s)	316, 428
FaiI	YATR	4 cut(s)	126, 308, 314, 426
FaqI	GGGAC	3 cut(s)	364, 449, 668
FatI	CATG	2 cut(s)	312, 424
FbaI	TGATCA	1 cut(s)	415
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	2 cut(s)	96, 612
FriOI	GRGCYC	2 cut(s)	81, 707
Fsp4HI	GCNGC	2 cut(s)	96, 612
FspBI	CTAG	1 cut(s)	558
GlaI	GCGC	1 cut(s)	575
GluI	GCNGC	2 cut(s)	96, 612
GsaI	CCCAGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	316
HaeII	RGCGCY	1 cut(s)	577
HaeIII	GGCC	1 cut(s)	440
HapII	CCGG	8 cut(s)	50, 84, 226, 405, 453, 467, 660, 700
HgaI	GACGC	3 cut(s)	101, 469, 548
HhaI	GCGC	1 cut(s)	576
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	316, 428
Hin6I	GCGC	1 cut(s)	574
HinP1I	GCGC	1 cut(s)	574
HindIII	AAGCTT	2 cut(s)	386, 646
HinfI	GANTC	4 cut(s)	209, 408, 449, 656
HpaII	CCGG	8 cut(s)	50, 84, 226, 405, 453, 467, 660, 700
HphI	GGTGA	1 cut(s)	352
Hpy166II	GTNNAC	2 cut(s)	487, 678
Hpy188I	TCNGA	7 cut(s)	70, 158, 193, 214, 239, 448, 497
Hpy188III	TCNNGA	1 cut(s)	295
Hpy8I	GTNNAC	2 cut(s)	487, 678
Hpy99I	CGWCG	5 cut(s)	9, 133, 162, 225, 485
HpyAV	CCTTC	3 cut(s)	162, 255, 706
HpyCH4III	ACNGT	3 cut(s)	356, 367, 433
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	3 cut(s)	303, 518, 672
HpyF10VI	GCNNNNNNNGC	6 cut(s)	25, 55, 80, 95, 548, 611
HpyF3I	CTNAG	2 cut(s)	236, 580
HpySE526I	ACGT	1 cut(s)	220
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	2 cut(s)	316, 428
HspAI	GCGC	1 cut(s)	574
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	1 cut(s)	415
LguI	GCTCTTC	1 cut(s)	206
LmnI	GCTCC	8 cut(s)	33, 86, 133, 228, 283, 449, 581, 710
LweI	GCATC	1 cut(s)	312
MaeI	CTAG	1 cut(s)	558
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	1 cut(s)	689
MalI	GATC	1 cut(s)	417
MboI	GATC	1 cut(s)	415
MboII	GAAGA	2 cut(s)	186, 193
MhlI	GDGCHC	3 cut(s)	81, 250, 707
MluCI	AATT	3 cut(s)	119, 290, 419
MlyI	GAGTC	3 cut(s)	218, 402, 650
MmeI	TCCRAC	2 cut(s)	181, 373
MnlI	CCTC	5 cut(s)	112, 189, 616, 625, 628
MslI	CAYNNNNRTG	1 cut(s)	311
MspI	CCGG	8 cut(s)	50, 84, 226, 405, 453, 467, 660, 700
MspR9I	CCNGG	3 cut(s)	467, 635, 701
Mva1269I	GAATGC	1 cut(s)	674
MvaI	CCWGG	1 cut(s)	635
MwoI	GCNNNNNNNGC	6 cut(s)	25, 55, 80, 95, 548, 611
NciI	CCSGG	2 cut(s)	467, 701
NdeII	GATC	1 cut(s)	415
NlaIII	CATG	2 cut(s)	316, 428
NlaIV	GGNNCC	3 cut(s)	155, 430, 706
NmeAIII	GCCGAG	1 cut(s)	416
NmuCI	GTSAC	1 cut(s)	689
PciSI	GCTCTTC	1 cut(s)	206
PctI	GAATGC	1 cut(s)	674
PfeI	GAWTC	1 cut(s)	449
PflMI	CCANNNNNTGG	1 cut(s)	640
PkrI	GCNGC	2 cut(s)	97, 613
PleI	GAGTC	3 cut(s)	217, 402, 650
PpsI	GAGTC	3 cut(s)	217, 402, 650
Psp6I	CCWGG	1 cut(s)	633
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	633
PspN4I	GGNNCC	3 cut(s)	155, 430, 706
PspPI	GGNCC	1 cut(s)	675
PstNI	CAGNNNCTG	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	311
SapI	GCTCTTC	1 cut(s)	206
SatI	GCNGC	2 cut(s)	96, 612
Sau3AI	GATC	1 cut(s)	415
Sau96I	GGNCC	1 cut(s)	675
SchI	GAGTC	3 cut(s)	218, 402, 650
ScrFI	CCNGG	3 cut(s)	467, 635, 701
SduI	GDGCHC	3 cut(s)	81, 250, 707
SfaNI	GCATC	1 cut(s)	312
SfcI	CTRYAG	1 cut(s)	256
SinI	GGWCC	1 cut(s)	675
SmiMI	CAYNNNNRTG	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
Sse9I	AATT	3 cut(s)	119, 290, 419
SsiI	CCGC	5 cut(s)	96, 584, 609, 612, 624
SspMI	CTAG	1 cut(s)	558
StyD4I	CCNGG	3 cut(s)	465, 633, 699
StyI	CCWWGG	1 cut(s)	112
TaaI	ACNGT	3 cut(s)	356, 367, 433
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	396
TasI	AATT	3 cut(s)	119, 290, 419
TauI	GCSGC	2 cut(s)	98, 614
TfiI	GAWTC	1 cut(s)	449
TscAI	CASTG	2 cut(s)	359, 466
TseFI	GTSAC	1 cut(s)	689
Tsp45I	GTSAC	1 cut(s)	689
TspDTI	ATGAA	4 cut(s)	113, 181, 413, 561
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	2 cut(s)	359, 466
Van91I	CCANNNNNTGG	1 cut(s)	640
VpaK11BI	GGWCC	1 cut(s)	675
XcmI	CCANNNNNNNNNTGG	1 cut(s)	637
XmiI	GTMKAC	1 cut(s)	486
XspI	CTAG	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.