Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0011760

Physical Location & Seq

Genomic Coordinates Reverse (-)

34583294 .. 34583839

Gene Structure 546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG300200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGATTTGCAGATTGGTGGTTGGCACATTATCCAACGCTCAAGGAAACGACGAACAAAGCGTCGCCACCACGAGCAATGCCAGCTCCAAGTTCGGGGTTTCAAGCCGGTCTGGCTTGCCGTATCAGAAGCTGGGCTCGCCGGAGCTGACGCCGCTTCCTCCACTTCCCAAGGACAATTTCATACGACGGAGCTACAAGCATGAACTGGGTTCCGACGATGATGAAGGGGAAGACGAGTTCTTTTCTCCGAGAGGCTCTTCTGCGAGTCCGAAAAACGTCGCCGGAGCAAGCTCAGATAGAGCACTCAAGGCTGTAGAAGGCAACAACTTTGGAAGCAGGAGCTTCAATTCAAGAACTGCATCCTACCCATGTTCAAAATCTGCTTCTCCAGTAAGTTCTGTGTCCAACACTGTCTCACCCCTTAAACCCTCAATCTCTCACCCTCATCTGCCTCTTCCACACTGGTCTCCTCCCTGCCAGCCTCCAGCCCTACGCACACCTTCGCCCAACTTCTGCAACAGACCGGTTCTTCCCAGACCGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010638 GO:0010639 GO:0016020 GO:0016043 GO:0030029 GO:0030036 GO:0030312 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0030838 GO:0031333 GO:0031334 GO:0032271 GO:0032272 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044089 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051015 GO:0051016 GO:0051128 GO:0051129 GO:0051130 GO:0051493 GO:0051494 GO:0051495 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0097435 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04320 map04320

Pfam Domains

Protein Families

FH2

Protein Analysis

181

Amino Acids

19.26

Weight (kDa)

9.21

Isoelectric Point (pI)

61.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43800
fragaria_vesca	FvH4_1g00460
malus_domestica	MD02G1003800.v1.1 MD15G1147100.v1.1
prunus_persica	Prupe.7G267500_v2.0.a1
pyrus_communis	pycom02g00230 pycom15g13200
rosa_chinensis	RchiOBHm_Chr2g0084971
rosa_laevigata	RLG00000015652
rosa_multiflora	Rmu_co8206718.1_g000001 Rmu_sc0017508.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155670
rosa_rugosa	Rorug01G0457400
rosa_samantha	Rh2AG005000 Rh2BG006200 Rh2BG300200 Rh2CG006800 Rh2DG006600
rosa_wichuraiana	Rw2G000500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	152
AcyI	GRCGYC	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgeI	ACCGGT	1 cut(s)	523
AgsI	TTSAA	4 cut(s)	102, 346, 351, 375
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AloI	GAACNNNNNNTCC	2 cut(s)	221, 253
AluBI	AGCT	6 cut(s)	84, 130, 145, 192, 291, 342
AluI	AGCT	6 cut(s)	84, 130, 145, 192, 291, 342
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	2 cut(s)	418, 471
AlwNI	CAGNNNCTG	1 cut(s)	130
AoxI	GGCC	1 cut(s)	540
ArsI	GACNNNNNNTTYG	2 cut(s)	45, 77
AsiGI	ACCGGT	1 cut(s)	523
AsuHPI	GGTGA	2 cut(s)	408, 431
BanII	GRGCYC	1 cut(s)	137
BauI	CACGAG	1 cut(s)	70
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	304
BceAI	ACGGC	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	418, 471
BfaI	CTAG	1 cut(s)	544
BfmI	CTRYAG	1 cut(s)	312
BglI	GCCNNNNNGGC	1 cut(s)	111
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
BmiI	GGNNCC	1 cut(s)	211
BmrI	ACTGGG	1 cut(s)	215
BmsI	GCATC	1 cut(s)	368
BmuI	ACTGGG	1 cut(s)	215
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	2 cut(s)	372, 468
BpuEI	CTTGAG	2 cut(s)	24, 290
BsaHI	GRCGYC	1 cut(s)	149
BsaI	GGTCTC	1 cut(s)	471
BsaJI	CCNNGG	1 cut(s)	168
BsaWI	WCCGGW	1 cut(s)	523
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse118I	RCCGGY	3 cut(s)	105, 523, 538
Bse1I	ACTGG	3 cut(s)	210, 389, 467
Bse3DI	GCAATG	1 cut(s)	82
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	1 cut(s)	359
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMI	GCAATG	1 cut(s)	82
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	3 cut(s)	210, 389, 467
BseRI	GAGGAG	1 cut(s)	459
BseYI	CCCAGC	1 cut(s)	130
BshFI	GGCC	1 cut(s)	542
BshTI	ACCGGT	1 cut(s)	523
BsiHKAI	GWGCWC	1 cut(s)	304
BsiSI	CCGG	5 cut(s)	106, 140, 282, 524, 539
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmAI	GTCTC	2 cut(s)	418, 471
BsnI	GGCC	1 cut(s)	542
Bso31I	GGTCTC	1 cut(s)	471
Bsp1286I	GDGCHC	2 cut(s)	137, 304
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	1 cut(s)	542
BspCNI	CTCAG	1 cut(s)	305
BspLI	GGNNCC	1 cut(s)	211
BspQI	GCTCTTC	1 cut(s)	262
BspTNI	GGTCTC	1 cut(s)	471
BsrDI	GCAATG	1 cut(s)	82
BsrFI	RCCGGY	3 cut(s)	105, 523, 538
BsrI	ACTGG	3 cut(s)	210, 389, 467
BssAI	RCCGGY	3 cut(s)	105, 523, 538
BssECI	CCNNGG	1 cut(s)	168
BssNI	GRCGYC	1 cut(s)	149
BssSI	CACGAG	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	168
Bst2BI	CACGAG	1 cut(s)	70
Bst4CI	ACNGT	1 cut(s)	412
Bst6I	CTCTTC	2 cut(s)	262, 459
BstACI	GRCGYC	1 cut(s)	149
BstC8I	GCNNGC	5 cut(s)	82, 116, 137, 289, 479
BstDEI	CTNAG	1 cut(s)	292
BstF5I	GGATG	1 cut(s)	359
BstMAI	GTCTC	2 cut(s)	418, 471
BstMWI	GCNNNNNNNGC	5 cut(s)	81, 111, 136, 151, 308
BstSFI	CTRYAG	1 cut(s)	312
BstV2I	GAAGAC	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	542
BtsCI	GGATG	1 cut(s)	359
BtsIMutI	CAGTG	2 cut(s)	408, 460
Cac8I	GCNNGC	5 cut(s)	82, 116, 137, 289, 479
CaiI	CAGNNNCTG	1 cut(s)	130
Cfr10I	RCCGGY	3 cut(s)	105, 523, 538
CseI	GACGC	2 cut(s)	49, 157
CspAI	ACCGGT	1 cut(s)	523
CviAII	CATG	2 cut(s)	200, 369
DdeI	CTNAG	1 cut(s)	292
Eam1104I	CTCTTC	2 cut(s)	262, 459
EarI	CTCTTC	2 cut(s)	262, 459
Eco130I	CCWWGG	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	137
Eco31I	GGTCTC	1 cut(s)	471
EcoT14I	CCWWGG	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	2 cut(s)	203, 372
FaiI	YATR	3 cut(s)	182, 201, 370
FatI	CATG	2 cut(s)	199, 368
Fnu4HI	GCNGC	1 cut(s)	152
FokI	GGATG	1 cut(s)	346
FriOI	GRGCYC	1 cut(s)	137
Fsp4HI	GCNGC	1 cut(s)	152
FspBI	CTAG	1 cut(s)	544
GluI	GCNGC	1 cut(s)	152
GsaI	CCCAGC	1 cut(s)	134
GsuI	CTGGAG	2 cut(s)	372, 468
HaeIII	GGCC	1 cut(s)	542
HapII	CCGG	5 cut(s)	106, 140, 282, 524, 539
HgaI	GACGC	2 cut(s)	49, 157
Hin1I	GRCGYC	1 cut(s)	149
Hin1II	CATG	2 cut(s)	203, 372
HinfI	GANTC	1 cut(s)	265
HpaII	CCGG	5 cut(s)	106, 140, 282, 524, 539
HphI	GGTGA	2 cut(s)	408, 431
Hpy188I	TCNGA	5 cut(s)	126, 214, 249, 270, 295
Hpy188III	TCNNGA	1 cut(s)	351
Hpy99I	CGWCG	5 cut(s)	53, 65, 189, 218, 281
HpyAV	CCTTC	3 cut(s)	218, 311, 510
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	3 cut(s)	9, 359, 516
HpyF10VI	GCNNNNNNNGC	5 cut(s)	81, 111, 136, 151, 308
HpyF3I	CTNAG	1 cut(s)	292
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	1 cut(s)	149
Hsp92II	CATG	2 cut(s)	203, 372
LguI	GCTCTTC	1 cut(s)	262
LmnI	GCTCC	5 cut(s)	89, 142, 189, 284, 339
LweI	GCATC	1 cut(s)	368
MaeI	CTAG	1 cut(s)	544
MaeII	ACGT	1 cut(s)	276
MboII	GAAGA	4 cut(s)	242, 249, 446, 521
MhlI	GDGCHC	2 cut(s)	137, 304
MluCI	AATT	2 cut(s)	175, 346
MlyI	GAGTC	1 cut(s)	274
MmeI	TCCRAC	3 cut(s)	57, 237, 429
MnlI	CCTC	7 cut(s)	168, 245, 439, 453, 462, 480, 492
MseI	TTAA	1 cut(s)	423
MspI	CCGG	5 cut(s)	106, 140, 282, 524, 539
MwoI	GCNNNNNNNGC	5 cut(s)	81, 111, 136, 151, 308
NlaIII	CATG	2 cut(s)	203, 372
NlaIV	GGNNCC	1 cut(s)	211
PciSI	GCTCTTC	1 cut(s)	262
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PinAI	ACCGGT	1 cut(s)	523
PkrI	GCNGC	1 cut(s)	153
PleI	GAGTC	1 cut(s)	273
PpsI	GAGTC	1 cut(s)	273
PspFI	CCCAGC	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	130
SapI	GCTCTTC	1 cut(s)	262
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	1 cut(s)	152
SchI	GAGTC	1 cut(s)	274
SduI	GDGCHC	2 cut(s)	137, 304
SetI	ASST	8 cut(s)	86, 132, 147, 194, 279, 293, 344, 502
SfaNI	GCATC	1 cut(s)	368
SfcI	CTRYAG	1 cut(s)	312
SmlI	CTYRAG	2 cut(s)	39, 305
SmoI	CTYRAG	2 cut(s)	39, 305
Sse9I	AATT	2 cut(s)	175, 346
SsiI	CCGC	1 cut(s)	152
SspMI	CTAG	1 cut(s)	544
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	412
TaiI	ACGT	1 cut(s)	279
TasI	AATT	2 cut(s)	175, 346
TauI	GCSGC	1 cut(s)	154
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	2 cut(s)	415, 467
TspDTI	ATGAA	3 cut(s)	169, 216, 237
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	2 cut(s)	415, 467
XspI	CTAG	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.