Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002767

Physical Location & Seq

Genomic Coordinates Forward (+)

9142681 .. 9143586

Gene Structure 906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g13400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGAAGATTTGGAGGCAAGCACTCTGCGTCTTCCAGTGACTGGAGGGGCAAGGGCAGATTTGGATTCTTTGAAGGTAGCGATCTGCTCAGCTGTTGATGTGATGCAGGCAATGGTATCCTTCATATGCTCTTTGCTCTCACAGGTGGAGGGCGTGAACAGTTTGGTTTCTGAACTTGCTGTTGTAGCAGCACAGGAAAAAGCCATGCTTGACGAGTGTGAAGCGCTGCTGGCTTCAGCAGCAGCTATGCAGGTAGAGGAATACAGCCTGAGGACCCATCTCATGCAAACGAAACAAGACTTGGCAAAGGCGAGCGGCCAATTTTGGCAACCAAGACATCTTCTTGATCCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

119

Amino Acids

12.72

Weight (kDa)

4.48

Isoelectric Point (pI)

28.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24070 AT2G24070 AT2G24070 AT4G30710 AT4G30710 AT4G30710 AT4G30710 AT4G30740
fragaria_vesca	FvH4_1g00660 FvH4_1g00660 FvH4_1g00660 FvH4_1g00660 FvH4_1g00660 FvH4_1g00660 FvH4_1g00660 FvH4_1g00660 FvH4_1g00660
malus_domestica	MD02G1005400.v1.1 MD15G1149900.v1.1
prunus_persica	Prupe.7G265600_v2.0.a1
pyrus_communis	pycom02g00420 pycom02g00430 pycom15g13390 pycom15g13400
rosa_chinensis	RchiOBHm_Chr2g0085281
rosa_laevigata	RLG00000015674
rosa_multiflora	Rmu_co8372449.1_g000001 Rmu_co8388711.1_g000001 Rmu_sc0008510.1_g000009
rosa_roxburghii	Rroxscaffold_2G00155490
rosa_rugosa	Rorug01G0459000 Rorug01G0459100 Rorug01G0459200 Rorug01G0459200
rosa_samantha	Rh2AG007600 Rh2BG008300 Rh2CG009000 Rh2DG009400
rosa_wichuraiana	Rw2G000720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	241
AccB7I	CCANNNNNTGG	1 cut(s)	41
AccBSI	CCGCTC	1 cut(s)	315
AciI	CCGC	1 cut(s)	315
AclWI	GGATC	1 cut(s)	341
AcoI	YGGCCR	1 cut(s)	316
AcuI	CTGAAG	1 cut(s)	219
AfeI	AGCGCT	1 cut(s)	225
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	1 cut(s)	73
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
AluBI	AGCT	2 cut(s)	92, 245
AluI	AGCT	2 cut(s)	92, 245
AlwI	GGATC	1 cut(s)	341
AlwNI	CAGNNNCTG	1 cut(s)	41
Aor51HI	AGCGCT	1 cut(s)	225
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	4 cut(s)	188, 226, 239, 242
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	273
AxyI	CCTNAGG	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	23
BbvI	GCAGC	4 cut(s)	200, 213, 251, 254
BccI	CCATC	1 cut(s)	285
BciVI	GTATCC	1 cut(s)	127
BfaI	CTAG	1 cut(s)	355
BfoI	RGCGCY	1 cut(s)	227
BfuAI	ACCTGC	1 cut(s)	241
BfuI	GTATCC	1 cut(s)	127
BisI	GCNGC	5 cut(s)	189, 227, 240, 243, 316
BlpI	GCTNAGC	1 cut(s)	88
BlsI	GCNGC	5 cut(s)	190, 228, 241, 244, 317
Bme18I	GGWCC	1 cut(s)	273
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	1 cut(s)	275
BmsI	GCATC	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	23
BpmI	CTGGAG	1 cut(s)	63
Bpu1102I	GCTNAGC	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	2 cut(s)	35, 46
Bse21I	CCTNAGG	1 cut(s)	269
Bse3DI	GCAATG	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	2 cut(s)	102, 260
BseNI	ACTGG	2 cut(s)	35, 46
BseXI	GCAGC	4 cut(s)	200, 213, 251, 254
BshFI	GGCC	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	41
BsnI	GGCC	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	81, 346
Bsp1720I	GCTNAGC	1 cut(s)	88
BspACI	CCGC	1 cut(s)	315
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	2 cut(s)	101, 261
BspLI	GGNNCC	1 cut(s)	275
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	341
BsrBI	CCGCTC	1 cut(s)	315
BsrDI	GCAATG	1 cut(s)	117
BsrI	ACTGG	2 cut(s)	35, 46
BssMI	GATC	2 cut(s)	81, 346
Bst4CI	ACNGT	1 cut(s)	161
BstC8I	GCNNGC	4 cut(s)	19, 108, 231, 313
BstDEI	CTNAG	2 cut(s)	88, 269
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	2 cut(s)	84, 349
BstMBI	GATC	2 cut(s)	81, 346
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 230, 239
BstV1I	GCAGC	4 cut(s)	200, 213, 251, 254
BstV2I	GAAGAC	1 cut(s)	23
Bsu36I	CCTNAGG	1 cut(s)	269
BsuI	GTATCC	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	42
BveI	ACCTGC	1 cut(s)	241
Cac8I	GCNNGC	4 cut(s)	19, 108, 231, 313
CaiI	CAGNNNCTG	1 cut(s)	41
CfoI	GCGC	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	273
CseI	GACGC	1 cut(s)	17
CviAII	CATG	2 cut(s)	205, 283
CviJI	RGCY	6 cut(s)	92, 203, 233, 245, 267, 318
CviKI_1	RGCY	6 cut(s)	92, 203, 233, 245, 267, 318
DdeI	CTNAG	2 cut(s)	88, 269
DpnI	GATC	2 cut(s)	83, 348
DpnII	GATC	2 cut(s)	81, 346
EaeI	YGGCCR	1 cut(s)	316
Eco47I	GGWCC	1 cut(s)	273
Eco47III	AGCGCT	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	219
Eco81I	CCTNAGG	1 cut(s)	269
EcoO109I	RGGNCCY	1 cut(s)	273
FaeI	CATG	2 cut(s)	208, 286
FaiI	YATR	5 cut(s)	125, 127, 206, 248, 284
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FatI	CATG	2 cut(s)	204, 282
FauNDI	CATATG	1 cut(s)	125
Fnu4HI	GCNGC	5 cut(s)	189, 227, 240, 243, 316
Fsp4HI	GCNGC	5 cut(s)	189, 227, 240, 243, 316
FspBI	CTAG	1 cut(s)	355
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	5 cut(s)	189, 227, 240, 243, 316
GsuI	CTGGAG	1 cut(s)	63
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	318
HgaI	GACGC	1 cut(s)	17
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	2 cut(s)	208, 286
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HinfI	GANTC	1 cut(s)	65
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	2 cut(s)	344, 350
Hpy8I	GTNNAC	1 cut(s)	157
HpyAV	CCTTC	2 cut(s)	67, 130
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4V	TGCA	3 cut(s)	106, 250, 286
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 230, 239
HpyF3I	CTNAG	2 cut(s)	88, 269
Hsp92II	CATG	2 cut(s)	208, 286
HspAI	GCGC	1 cut(s)	224
Kzo9I	GATC	2 cut(s)	81, 346
LpnPI	CCDG	8 cut(s)	27, 48, 92, 128, 179, 215, 236, 281
Lsp1109I	GCAGC	4 cut(s)	200, 213, 251, 254
LweI	GCATC	1 cut(s)	93
MaeI	CTAG	1 cut(s)	355
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	2 cut(s)	83, 348
MbiI	CCGCTC	1 cut(s)	315
MboI	GATC	2 cut(s)	81, 346
MboII	GAAGA	3 cut(s)	17, 23, 332
MluCI	AATT	1 cut(s)	320
MnlI	CCTC	5 cut(s)	7, 38, 142, 250, 264
MspA1I	CMGCKG	1 cut(s)	92
MwoI	GCNNNNNNNGC	3 cut(s)	185, 230, 239
NdeI	CATATG	1 cut(s)	125
NdeII	GATC	2 cut(s)	81, 346
NlaIII	CATG	2 cut(s)	208, 286
NlaIV	GGNNCC	1 cut(s)	275
NmuCI	GTSAC	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	65
PflMI	CCANNNNNTGG	1 cut(s)	41
PkrI	GCNGC	5 cut(s)	190, 228, 241, 244, 317
PpuMI	RGGWCCY	1 cut(s)	273
Psp5II	RGGWCCY	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	275
PspPI	GGNCC	1 cut(s)	273
PspPPI	RGGWCCY	1 cut(s)	273
PstNI	CAGNNNCTG	1 cut(s)	41
PvuII	CAGCTG	1 cut(s)	92
SatI	GCNGC	5 cut(s)	189, 227, 240, 243, 316
Sau3AI	GATC	2 cut(s)	81, 346
Sau96I	GGNCC	1 cut(s)	273
SetI	ASST	5 cut(s)	78, 94, 147, 247, 255
SfaNI	GCATC	1 cut(s)	93
SinI	GGWCC	1 cut(s)	273
Sse9I	AATT	1 cut(s)	320
SsiI	CCGC	1 cut(s)	315
SspMI	CTAG	1 cut(s)	355
TaaI	ACNGT	1 cut(s)	161
TasI	AATT	1 cut(s)	320
TauI	GCSGC	1 cut(s)	318
TfiI	GAWTC	1 cut(s)	65
TscAI	CASTG	1 cut(s)	42
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	4 cut(s)	188, 226, 239, 242
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	1 cut(s)	112
TspRI	CASTG	1 cut(s)	42
Van91I	CCANNNNNTGG	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	273
XspI	CTAG	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.