Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8388711.1

Orthogroup ID

OG0002767

Physical Location & Seq

Genomic Coordinates Reverse (-)

16 .. 919

Gene Structure 904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8388711.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atggactaccttgacgactgggctttacttgaaagagatcatattgctgctttctccggggctatggaagatttggaggcaagcactctccgtcttccagtaactggaggggcaaggacggatattgactctttgaaggtagctatctgctcagctgttgatgtgatgcaggcaatgggatcctccatatgctctttgctctcaagggtggagggggtgaatggtttggtttcagaacttgctgttgtagcagcgcaagagaaagccatgcttgacgaatgtgaagcattgctggcttcagcagcagttatgcaggtagaggaatacagccttaagacgcaactcatacaaatgaaacaagatttgggaactgtcagcagccaattttggcaaccaagacagcttcttgaacctgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

139

Amino Acids

15.07

Weight (kDa)

4.22

Isoelectric Point (pI)

30.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24070 AT2G24070 AT2G24070 AT4G30710 AT4G30710 AT4G30710 AT4G30710 AT4G30740
fragaria_vesca	FvH4_1g00660 FvH4_1g00660 FvH4_1g00660 FvH4_1g00660 FvH4_1g00660 FvH4_1g00660 FvH4_1g00660 FvH4_1g00660 FvH4_1g00660
malus_domestica	MD02G1005400.v1.1 MD15G1149900.v1.1
prunus_persica	Prupe.7G265600_v2.0.a1
pyrus_communis	pycom02g00420 pycom02g00430 pycom15g13390 pycom15g13400
rosa_chinensis	RchiOBHm_Chr2g0085281
rosa_laevigata	RLG00000015674
rosa_multiflora	Rmu_co8372449.1_g000001 Rmu_co8388711.1_g000001 Rmu_sc0008510.1_g000009
rosa_roxburghii	Rroxscaffold_2G00155490
rosa_rugosa	Rorug01G0459000 Rorug01G0459100 Rorug01G0459200 Rorug01G0459200
rosa_samantha	Rh2AG007600 Rh2BG008300 Rh2CG009000 Rh2DG009400
rosa_wichuraiana	Rw2G000720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	304
AccB7I	CCANNNNNTGG	1 cut(s)	104
AclWI	GGATC	2 cut(s)	174, 187
AcuI	CTGAAG	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	104
AflII	CTTAAG	1 cut(s)	332
AgsI	TTSAA	3 cut(s)	32, 136, 410
AjuI	GAANNNNNNNTTGG	2 cut(s)	347, 379
AluBI	AGCT	3 cut(s)	143, 155, 403
AluI	AGCT	3 cut(s)	143, 155, 403
AlwI	GGATC	2 cut(s)	174, 187
AlwNI	CAGNNNCTG	1 cut(s)	104
ApeKI	GCWGC	4 cut(s)	47, 251, 302, 378
AspLEI	GCGC	1 cut(s)	256
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	229
BamHI	GGATCC	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	86
BbvI	GCAGC	4 cut(s)	34, 263, 314, 390
BcnI	CCSGG	1 cut(s)	58
BfaI	CTAG	1 cut(s)	418
BfrI	CTTAAG	1 cut(s)	332
BfuAI	ACCTGC	1 cut(s)	304
BisI	GCNGC	4 cut(s)	48, 252, 303, 379
BlpI	GCTNAGC	1 cut(s)	151
BlsI	GCNGC	4 cut(s)	49, 253, 304, 380
Bme1390I	CCNGG	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	58
BmrI	ACTGGG	1 cut(s)	28
BmsI	GCATC	1 cut(s)	156
BmuI	ACTGGG	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	86
BpmI	CTGGAG	1 cut(s)	126
Bpu1102I	GCTNAGC	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	187
BpuMI	CCSGG	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse1I	ACTGG	3 cut(s)	23, 98, 109
Bse3DI	GCAATG	2 cut(s)	180, 287
BseDI	CCNNGG	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMI	GCAATG	2 cut(s)	180, 287
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	3 cut(s)	23, 98, 109
BseXI	GCAGC	4 cut(s)	34, 263, 314, 390
BsiSI	CCGG	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	104
Bsp143I	GATC	2 cut(s)	37, 179
Bsp1720I	GCTNAGC	1 cut(s)	151
BspCNI	CTCAG	1 cut(s)	164
BspLI	GGNNCC	1 cut(s)	181
BspMI	ACCTGC	1 cut(s)	304
BspPI	GGATC	2 cut(s)	174, 187
BspTI	CTTAAG	1 cut(s)	332
BsrDI	GCAATG	2 cut(s)	180, 287
BsrI	ACTGG	3 cut(s)	23, 98, 109
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	2 cut(s)	37, 179
Bst4CI	ACNGT	1 cut(s)	373
BstAFI	CTTAAG	1 cut(s)	332
BstC8I	GCNNGC	3 cut(s)	82, 171, 294
BstDEI	CTNAG	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	2 cut(s)	40, 182
BstMBI	GATC	2 cut(s)	37, 179
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 293, 302
BstSCI	CCNGG	1 cut(s)	56
BstV1I	GCAGC	4 cut(s)	34, 263, 314, 390
BstV2I	GAAGAC	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	179
BveI	ACCTGC	1 cut(s)	304
Cac8I	GCNNGC	3 cut(s)	82, 171, 294
CaiI	CAGNNNCTG	1 cut(s)	104
CfoI	GCGC	1 cut(s)	256
CseI	GACGC	1 cut(s)	346
CviAII	CATG	1 cut(s)	268
CviJI	RGCY	9 cut(s)	23, 62, 143, 155, 266, 296, 330, 381, 403
CviKI_1	RGCY	9 cut(s)	23, 62, 143, 155, 266, 296, 330, 381, 403
DdeI	CTNAG	1 cut(s)	151
DpnI	GATC	2 cut(s)	39, 181
DpnII	GATC	2 cut(s)	37, 179
Eco57I	CTGAAG	1 cut(s)	282
FaeI	CATG	1 cut(s)	271
FaiI	YATR	7 cut(s)	42, 65, 188, 190, 269, 311, 347
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FatI	CATG	1 cut(s)	267
FauNDI	CATATG	1 cut(s)	188
Fnu4HI	GCNGC	4 cut(s)	48, 252, 303, 379
Fsp4HI	GCNGC	4 cut(s)	48, 252, 303, 379
FspBI	CTAG	1 cut(s)	418
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	4 cut(s)	48, 252, 303, 379
GsuI	CTGGAG	1 cut(s)	126
HapII	CCGG	1 cut(s)	57
HgaI	GACGC	1 cut(s)	346
HhaI	GCGC	1 cut(s)	256
Hin1II	CATG	1 cut(s)	271
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	1 cut(s)	229
Hpy188I	TCNGA	1 cut(s)	235
Hpy188III	TCNNGA	1 cut(s)	407
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4V	TGCA	2 cut(s)	169, 313
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 293, 302
HpyF3I	CTNAG	1 cut(s)	151
Hsp92II	CATG	1 cut(s)	271
HspAI	GCGC	1 cut(s)	254
Kzo9I	GATC	2 cut(s)	37, 179
LpnPI	CCDG	7 cut(s)	4, 70, 90, 111, 155, 278, 299
Lsp1109I	GCAGC	4 cut(s)	34, 263, 314, 390
LweI	GCATC	1 cut(s)	156
MaeI	CTAG	1 cut(s)	418
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	2 cut(s)	39, 181
MboI	GATC	2 cut(s)	37, 179
MboII	GAAGA	2 cut(s)	80, 86
MflI	RGATCY	1 cut(s)	179
MluCI	AATT	1 cut(s)	383
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	5 cut(s)	70, 101, 193, 205, 313
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	155
MspCI	CTTAAG	1 cut(s)	332
MspI	CCGG	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	58
MwoI	GCNNNNNNNGC	3 cut(s)	248, 293, 302
NciI	CCSGG	1 cut(s)	58
NdeI	CATATG	1 cut(s)	188
NdeII	GATC	2 cut(s)	37, 179
NlaIII	CATG	1 cut(s)	271
NlaIV	GGNNCC	1 cut(s)	181
PflMI	CCANNNNNTGG	1 cut(s)	104
PkrI	GCNGC	4 cut(s)	49, 253, 304, 380
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	181
PstNI	CAGNNNCTG	1 cut(s)	104
PsuI	RGATCY	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	350
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	4 cut(s)	48, 252, 303, 379
Sau3AI	GATC	2 cut(s)	37, 179
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	58
SetI	ASST	7 cut(s)	12, 141, 145, 157, 318, 405, 415
SfaNI	GCATC	1 cut(s)	156
SmiMI	CAYNNNNRTG	1 cut(s)	350
SmlI	CTYRAG	2 cut(s)	202, 332
SmoI	CTYRAG	2 cut(s)	202, 332
Sse9I	AATT	1 cut(s)	383
SspMI	CTAG	1 cut(s)	418
StyD4I	CCNGG	1 cut(s)	56
TaaI	ACNGT	1 cut(s)	373
TasI	AATT	1 cut(s)	383
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TseI	GCWGC	4 cut(s)	47, 251, 302, 378
TspDTI	ATGAA	1 cut(s)	368
TspGWI	ACGGA	2 cut(s)	80, 134
Van91I	CCANNNNNTGG	1 cut(s)	104
Vha464I	CTTAAG	1 cut(s)	332
XspI	CTAG	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.