Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8372449.1

Orthogroup ID

OG0002767

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1020

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8372449.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

cggccggctagtccatcaacgccggtgaaggattcttcggtagatgtttcatccaaaagaagtggtcggttgcctgagggtttgtggccttcaacgatgagaagtttgagtgtttcatttcagtctgatacgatttcgattcctgtcagtgttagtaggaaggagaagccagtaactagtgctttatcggatcggacattaaggtcatcgtccaatgtggctcatagacaggccgaggcagctccgagaaaggtcacaccggagaggaagaggagccctcttagagggaggaatgtgtctgatcaattagagaattcgaaaccagtggatggtttgcattctagattgatagatcagcatcggtggcctagtagaataggtgggaaagtatcttccaattccaattcattaaacaaaagtatggatcttggtcctaggatcctcaagcttgctacaccagctcctggagttggggtacctatgctgaggcgaatgcctgcagctgatggtttgggaaagccggtacagaaattgggtggtgatgctgcgattttatcatcactccatgaaagtggtagactgggagcaaattcagttgatgatagttcactgcacaagcgtttttcagaaaggttgtcaaatgcaactcctaaagtcagatccctatcgcgaccgtcctcacctagtaaggcatcagtgttttcaccttctgtttcaagaggtggtagtccatctcggacttcaagaccatctactcctccttctagaggagttagtccatcaaagacaagggtttcgagtacttcttgtcaatcaagtagtgcaacttctgtgcttagtttcattgctgatttcaaggggaaaaagagtgcagcttacattgaagatgctcatcagctgcggctacttcacaatagatttttgcagtggagatttgctaatgccagggcagaggctgtactttatattcacaaagtaactgcagaggtgggttgtctatgtaacttggcaaacttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

339

Amino Acids

36.43

Weight (kDa)

11.18

Isoelectric Point (pI)

65.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24070 AT2G24070 AT2G24070 AT4G30710 AT4G30710 AT4G30710 AT4G30710 AT4G30740
fragaria_vesca	FvH4_1g00660 FvH4_1g00660 FvH4_1g00660 FvH4_1g00660 FvH4_1g00660 FvH4_1g00660 FvH4_1g00660 FvH4_1g00660 FvH4_1g00660
malus_domestica	MD02G1005400.v1.1 MD15G1149900.v1.1
prunus_persica	Prupe.7G265600_v2.0.a1
pyrus_communis	pycom02g00420 pycom02g00430 pycom15g13390 pycom15g13400
rosa_chinensis	RchiOBHm_Chr2g0085281
rosa_laevigata	RLG00000015674
rosa_multiflora	Rmu_co8372449.1_g000001 Rmu_co8388711.1_g000001 Rmu_sc0008510.1_g000009
rosa_roxburghii	Rroxscaffold_2G00155490
rosa_rugosa	Rorug01G0459000 Rorug01G0459100 Rorug01G0459200 Rorug01G0459200
rosa_samantha	Rh2AG007600 Rh2BG008300 Rh2CG009000 Rh2DG009400
rosa_wichuraiana	Rw2G000720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	202
Acc65I	GGTACC	1 cut(s)	475
AccB1I	GGYRCC	1 cut(s)	475
AccB7I	CCANNNNNTGG	2 cut(s)	329, 464
AccI	GTMKAC	1 cut(s)	577
AccII	CGCG	1 cut(s)	670
AciI	CCGC	1 cut(s)	901
AclWI	GGATC	5 cut(s)	198, 432, 433, 446, 654
AcoI	YGGCCR	1 cut(s)	2
AcsI	RAATTY	2 cut(s)	313, 589
AfaI	GTAC	4 cut(s)	477, 525, 802, 960
AfiI	CCNNNNNNNGG	5 cut(s)	284, 329, 464, 470, 767
AgsI	TTSAA	5 cut(s)	93, 717, 744, 856, 884
AhlI	ACTAGT	1 cut(s)	176
AjnI	CCWGG	2 cut(s)	463, 944
AluBI	AGCT	6 cut(s)	242, 448, 461, 503, 875, 898
AluI	AGCT	6 cut(s)	242, 448, 461, 503, 875, 898
AlwI	GGATC	5 cut(s)	198, 432, 433, 446, 654
AlwNI	CAGNNNCTG	2 cut(s)	464, 956
AoxI	GGCC	4 cut(s)	2, 86, 231, 365
ApeKI	GCWGC	5 cut(s)	239, 500, 545, 872, 898
ApoI	RAATTY	2 cut(s)	313, 589
ArsI	GACNNNNNNTTYG	2 cut(s)	778, 810
Asp718I	GGTACC	1 cut(s)	475
AspA2I	CCTAGG	1 cut(s)	434
AspS9I	GGNCC	1 cut(s)	431
AsuHPI	GGTGA	4 cut(s)	37, 551, 672, 696
AsuII	TTCGAA	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	431
AvrII	CCTAGG	1 cut(s)	434
AxyI	CCTNAGG	1 cut(s)	75
BamHI	GGATCC	1 cut(s)	438
BanI	GGYRCC	1 cut(s)	475
BanII	GRGCYC	1 cut(s)	278
BarI	GAAGNNNNNNTAC	2 cut(s)	811, 843
BbvCI	CCTCAGC	1 cut(s)	485
BbvI	GCAGC	5 cut(s)	251, 512, 532, 884, 885
BccI	CCATC	6 cut(s)	22, 323, 500, 739, 757, 787
BciT130I	CCWGG	2 cut(s)	465, 946
BclI	TGATCA	1 cut(s)	301
BcuI	ACTAGT	1 cut(s)	176
BfaI	CTAG	7 cut(s)	9, 177, 342, 369, 435, 684, 765
BfmI	CTRYAG	2 cut(s)	498, 981
BisI	GCNGC	6 cut(s)	240, 501, 546, 873, 899, 902
BlnI	CCTAGG	1 cut(s)	434
BlsI	GCNGC	6 cut(s)	241, 502, 547, 874, 900, 903
BmcAI	AGTACT	1 cut(s)	802
Bme1390I	CCNGG	2 cut(s)	465, 946
Bme18I	GGWCC	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	431
BmiI	GGNNCC	3 cut(s)	275, 440, 477
BmrFI	CCNGG	2 cut(s)	465, 946
BmrI	ACTGGG	1 cut(s)	590
BmsI	GCATC	4 cut(s)	367, 532, 701, 877
BmuI	ACTGGG	1 cut(s)	590
BplI	GAGNNNNNCTC	2 cut(s)	262, 294
BpmI	CTGGAG	1 cut(s)	486
Bpu10I	CCTNAGC	1 cut(s)	485
Bpu14I	TTCGAA	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	428
BsaBI	GATNNNNATC	3 cut(s)	357, 664, 891
BsaJI	CCNNGG	3 cut(s)	234, 434, 945
BsaWI	WCCGGW	1 cut(s)	259
BsaXI	ACNNNNNCTCC	4 cut(s)	445, 459, 475, 489
Bsc4I	CCNNNNNNNGG	5 cut(s)	284, 329, 464, 470, 767
Bse118I	RCCGGY	3 cut(s)	4, 22, 520
Bse1I	ACTGG	3 cut(s)	170, 323, 585
Bse21I	CCTNAGG	1 cut(s)	75
Bse3DI	GCAATG	1 cut(s)	843
Bse8I	GATNNNNATC	3 cut(s)	357, 664, 891
BseBI	CCWGG	2 cut(s)	465, 946
BseDI	CCNNGG	3 cut(s)	234, 434, 945
BseGI	GGATG	2 cut(s)	50, 334
BseJI	GATNNNNATC	3 cut(s)	357, 664, 891
BseLI	CCNNNNNNNGG	5 cut(s)	284, 329, 464, 470, 767
BseMI	GCAATG	1 cut(s)	843
BseMII	CTCAG	2 cut(s)	66, 476
BseNI	ACTGG	3 cut(s)	170, 323, 585
BseRI	GAGGAG	3 cut(s)	286, 747, 783
BseX3I	CGGCCG	1 cut(s)	2
BseXI	GCAGC	5 cut(s)	251, 512, 532, 884, 885
BsgI	GTGCAG	2 cut(s)	596, 891
Bsh1236I	CGCG	1 cut(s)	670
Bsh1285I	CGRYCG	2 cut(s)	5, 674
BshFI	GGCC	4 cut(s)	4, 88, 233, 367
BshNI	GGYRCC	1 cut(s)	475
BsiEI	CGRYCG	2 cut(s)	5, 674
BsiSI	CCGG	4 cut(s)	5, 23, 260, 521
BslI	CCNNNNNNNGG	5 cut(s)	284, 329, 464, 470, 767
BsmI	GAATGC	2 cut(s)	337, 498
BsnI	GGCC	4 cut(s)	4, 88, 233, 367
Bsp119I	TTCGAA	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	6 cut(s)	190, 301, 352, 424, 438, 659
Bsp68I	TCGCGA	1 cut(s)	670
BspACI	CCGC	1 cut(s)	901
BspANI	GGCC	4 cut(s)	4, 88, 233, 367
BspCNI	CTCAG	2 cut(s)	67, 477
BspFNI	CGCG	1 cut(s)	670
BspLI	GGNNCC	3 cut(s)	275, 440, 477
BspMAI	CTGCAG	2 cut(s)	502, 985
BspPI	GGATC	5 cut(s)	198, 432, 433, 446, 654
BspT104I	TTCGAA	1 cut(s)	317
BspT107I	GGYRCC	1 cut(s)	475
BsrDI	GCAATG	1 cut(s)	843
BsrFI	RCCGGY	3 cut(s)	4, 22, 520
BsrI	ACTGG	3 cut(s)	170, 323, 585
BssAI	RCCGGY	3 cut(s)	4, 22, 520
BssECI	CCNNGG	3 cut(s)	234, 434, 945
BssMI	GATC	6 cut(s)	190, 301, 352, 424, 438, 659
BssT1I	CCWWGG	1 cut(s)	434
Bst2UI	CCWGG	2 cut(s)	465, 946
Bst4CI	ACNGT	1 cut(s)	675
Bst6I	CTCTTC	1 cut(s)	263
BstBI	TTCGAA	1 cut(s)	317
BstC8I	GCNNGC	3 cut(s)	6, 450, 498
BstDEI	CTNAG	4 cut(s)	75, 281, 485, 836
BstENI	CCTNNNNNAGG	2 cut(s)	282, 765
BstF5I	GGATG	2 cut(s)	50, 334
BstFNI	CGCG	1 cut(s)	670
BstKTI	GATC	6 cut(s)	193, 304, 355, 427, 441, 662
BstMBI	GATC	6 cut(s)	190, 301, 352, 424, 438, 659
BstMCI	CGRYCG	2 cut(s)	5, 674
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 364, 458
BstNI	CCWGG	2 cut(s)	465, 946
BstSCI	CCNGG	2 cut(s)	463, 944
BstSFI	CTRYAG	2 cut(s)	498, 981
BstUI	CGCG	1 cut(s)	670
BstV1I	GCAGC	5 cut(s)	251, 512, 532, 884, 885
BstX2I	RGATCY	3 cut(s)	424, 438, 659
BstXI	CCANNNNNNTGG	1 cut(s)	572
BstYI	RGATCY	3 cut(s)	424, 438, 659
BstZI	CGGCCG	1 cut(s)	2
Bsu36I	CCTNAGG	1 cut(s)	75
BsuRI	GGCC	4 cut(s)	4, 88, 233, 367
BtsCI	GGATG	2 cut(s)	50, 334
BtsI	GCAGTG	2 cut(s)	608, 932
BtsIMutI	CAGTG	5 cut(s)	154, 330, 608, 702, 932
BtuMI	TCGCGA	1 cut(s)	670
Cac8I	GCNNGC	3 cut(s)	6, 450, 498
CaiI	CAGNNNCTG	2 cut(s)	464, 956
Cfr10I	RCCGGY	3 cut(s)	4, 22, 520
Cfr13I	GGNCC	1 cut(s)	431
Csp6I	GTAC	4 cut(s)	476, 524, 801, 959
CspCI	CAANNNNNGTGG	2 cut(s)	43, 78
CviAII	CATG	1 cut(s)	566
CviQI	GTAC	4 cut(s)	476, 524, 801, 959
DdeI	CTNAG	4 cut(s)	75, 281, 485, 836
DpnI	GATC	6 cut(s)	192, 303, 354, 426, 440, 661
DpnII	GATC	6 cut(s)	190, 301, 352, 424, 438, 659
DrdI	GACNNNNNNGTC	1 cut(s)	202
DseDI	GACNNNNNNGTC	1 cut(s)	202
EaeI	YGGCCR	1 cut(s)	2
EagI	CGGCCG	1 cut(s)	2
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
EclXI	CGGCCG	1 cut(s)	2
Eco130I	CCWWGG	1 cut(s)	434
Eco24I	GRGCYC	1 cut(s)	278
Eco47I	GGWCC	1 cut(s)	431
Eco52I	CGGCCG	1 cut(s)	2
Eco81I	CCTNAGG	1 cut(s)	75
EcoNI	CCTNNNNNAGG	2 cut(s)	282, 765
EcoRI	GAATTC	1 cut(s)	313
EcoRII	CCWGG	2 cut(s)	463, 944
EcoT14I	CCWWGG	1 cut(s)	434
EcoT38I	GRGCYC	1 cut(s)	278
ErhI	CCWWGG	1 cut(s)	434
FaeI	CATG	1 cut(s)	569
FaiI	YATR	6 cut(s)	225, 422, 482, 567, 966, 1000
FatI	CATG	1 cut(s)	565
FbaI	TGATCA	1 cut(s)	301
FblI	GTMKAC	1 cut(s)	577
Fnu4HI	GCNGC	6 cut(s)	240, 501, 546, 873, 899, 902
FokI	GGATG	2 cut(s)	37, 341
FriOI	GRGCYC	1 cut(s)	278
Fsp4HI	GCNGC	6 cut(s)	240, 501, 546, 873, 899, 902
FspBI	CTAG	7 cut(s)	9, 177, 342, 369, 435, 684, 765
GluI	GCNGC	6 cut(s)	240, 501, 546, 873, 899, 902
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	4 cut(s)	4, 88, 233, 367
HapII	CCGG	4 cut(s)	5, 23, 260, 521
Hin1II	CATG	1 cut(s)	569
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	2 cut(s)	32, 139
HpaII	CCGG	4 cut(s)	5, 23, 260, 521
HphI	GGTGA	4 cut(s)	37, 551, 672, 696
Hpy166II	GTNNAC	2 cut(s)	578, 608
Hpy188I	TCNGA	8 cut(s)	127, 190, 195, 246, 301, 628, 659, 738
Hpy188III	TCNNGA	5 cut(s)	342, 669, 717, 744, 765
Hpy8I	GTNNAC	2 cut(s)	578, 608
HpyAV	CCTTC	5 cut(s)	22, 99, 154, 717, 771
HpyCH4III	ACNGT	1 cut(s)	675
HpyCH4V	TGCA	8 cut(s)	337, 500, 613, 644, 824, 872, 925, 983
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 364, 458
HpyF3I	CTNAG	4 cut(s)	75, 281, 485, 836
Hsp92II	CATG	1 cut(s)	569
KpnI	GGTACC	1 cut(s)	479
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	6 cut(s)	190, 301, 352, 424, 438, 659
LmnI	GCTCC	4 cut(s)	247, 273, 466, 584
Lsp1109I	GCAGC	5 cut(s)	251, 512, 532, 884, 885
LweI	GCATC	4 cut(s)	367, 532, 701, 877
MaeI	CTAG	7 cut(s)	9, 177, 342, 369, 435, 684, 765
MaeIII	GTNAC	4 cut(s)	172, 253, 976, 1001
MalI	GATC	6 cut(s)	192, 303, 354, 426, 440, 661
MboI	GATC	6 cut(s)	190, 301, 352, 424, 438, 659
MboII	GAAGA	4 cut(s)	27, 280, 384, 896
MflI	RGATCY	3 cut(s)	424, 438, 659
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	6 cut(s)	305, 313, 397, 403, 530, 589
MroNI	GCCGGC	1 cut(s)	4
MseI	TTAA	2 cut(s)	200, 410
MslI	CAYNNNNRTG	1 cut(s)	570
MspA1I	CMGCKG	2 cut(s)	503, 898
MspI	CCGG	4 cut(s)	5, 23, 260, 521
MspR9I	CCNGG	2 cut(s)	465, 946
Mva1269I	GAATGC	2 cut(s)	337, 498
MvaI	CCWGG	2 cut(s)	465, 946
MvnI	CGCG	1 cut(s)	670
MwoI	GCNNNNNNNGC	3 cut(s)	239, 364, 458
NaeI	GCCGGC	1 cut(s)	6
NdeII	GATC	6 cut(s)	190, 301, 352, 424, 438, 659
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	569
NlaIV	GGNNCC	3 cut(s)	275, 440, 477
NmeAIII	GCCGAG	1 cut(s)	259
NmuCI	GTSAC	1 cut(s)	253
NruI	TCGCGA	1 cut(s)	670
NspV	TTCGAA	1 cut(s)	317
PctI	GAATGC	2 cut(s)	337, 498
PdiI	GCCGGC	1 cut(s)	6
PfeI	GAWTC	2 cut(s)	32, 139
PflMI	CCANNNNNTGG	2 cut(s)	329, 464
PfoI	TCCNGGA	1 cut(s)	463
PkrI	GCNGC	6 cut(s)	241, 502, 547, 874, 900, 903
Psp6I	CCWGG	2 cut(s)	463, 944
PspGI	CCWGG	2 cut(s)	463, 944
PspN4I	GGNNCC	3 cut(s)	275, 440, 477
PspPI	GGNCC	1 cut(s)	431
PstI	CTGCAG	2 cut(s)	502, 985
PstNI	CAGNNNCTG	2 cut(s)	464, 956
PsuI	RGATCY	3 cut(s)	424, 438, 659
PvuII	CAGCTG	2 cut(s)	503, 898
RruI	TCGCGA	1 cut(s)	670
RsaI	GTAC	4 cut(s)	477, 525, 802, 960
RsaNI	GTAC	4 cut(s)	476, 524, 801, 959
RseI	CAYNNNNRTG	1 cut(s)	570
SaqAI	TTAA	2 cut(s)	200, 410
SatI	GCNGC	6 cut(s)	240, 501, 546, 873, 899, 902
Sau3AI	GATC	6 cut(s)	190, 301, 352, 424, 438, 659
Sau96I	GGNCC	1 cut(s)	431
ScaI	AGTACT	1 cut(s)	802
ScrFI	CCNGG	2 cut(s)	465, 946
SduI	GDGCHC	1 cut(s)	278
SfaNI	GCATC	4 cut(s)	367, 532, 701, 877
SfcI	CTRYAG	2 cut(s)	498, 981
SfuI	TTCGAA	1 cut(s)	317
SgrAI	CRCCGGYG	1 cut(s)	22
SinI	GGWCC	1 cut(s)	431
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
SpeI	ACTAGT	1 cut(s)	176
Sse9I	AATT	6 cut(s)	305, 313, 397, 403, 530, 589
SsiI	CCGC	1 cut(s)	901
SspMI	CTAG	7 cut(s)	9, 177, 342, 369, 435, 684, 765
StyD4I	CCNGG	2 cut(s)	463, 944
StyI	CCWWGG	1 cut(s)	434
TaaI	ACNGT	1 cut(s)	675
TaqI	TCGA	3 cut(s)	137, 317, 797
TasI	AATT	6 cut(s)	305, 313, 397, 403, 530, 589
TatI	WGTACW	2 cut(s)	800, 958
TauI	GCSGC	1 cut(s)	904
TfiI	GAWTC	2 cut(s)	32, 139
Tru1I	TTAA	2 cut(s)	200, 410
Tru9I	TTAA	2 cut(s)	200, 410
TscAI	CASTG	5 cut(s)	154, 330, 615, 702, 932
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	5 cut(s)	239, 500, 545, 872, 898
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	5 cut(s)	39, 105, 396, 582, 832
TspRI	CASTG	5 cut(s)	154, 330, 615, 702, 932
Van91I	CCANNNNNTGG	2 cut(s)	329, 464
VpaK11BI	GGWCC	1 cut(s)	431
XagI	CCTNNNNNAGG	2 cut(s)	282, 765
XapI	RAATTY	2 cut(s)	313, 589
XbaI	TCTAGA	2 cut(s)	341, 764
XmaJI	CCTAGG	1 cut(s)	434
XmiI	GTMKAC	1 cut(s)	577
XspI	CTAG	7 cut(s)	9, 177, 342, 369, 435, 684, 765
ZrmI	AGTACT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.