pycom15g13830

Belongs to the aldehyde dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0007245
Physical Location & Seq
Reverse (-)
9446721 .. 9448038
1318 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 882 bp
ATGGTGCATTGCTTCCACTTGGCTGGATTTCCCAAAGGCCTTATTAGCTGTGTCACTGGGAAAGGATCTGAGATCGGCGACTTCCTTACCATGCATCCTGGAGTGAACTGCATTAGCTTCACTGGTGGTGACACCGGCATTGCAATTTCGAAAAAGGCAGGCATGATCGATCTTCAGATGGAGTTGGGAGGAAAAGATGCATGCATTGTGCTTGAAGATGCCGACCTAGATTTGGTCGCAGCAAACATAATAAAGGGAGGCTTTTCTTACAGCGGTCAAAGATGTACTGCTGTTAAGGTTGTCTTGGTGATGGAATCCGTTGCTGATGCCCTGGTCGCGAAAGTGAATGCACGAGTGGCGAAATTAACTGTTGGTCCACCAGAGGATAACAGCGACATCACTCCCGTTGTTTCAGAATCATCTGCGAATTTTATTGAAGGTTTGGTTGTGGATGCAAAACAGAAGGGAGCAACATTTTGCCAAGAGTACAAGAGAGACGGCAACCTTATCTGGCCTTTGTTGTTAGATAATGTCAGGCCGGACATGAGAATTGCATGGGAAGAGCCATTCGGTCCAGTTTTGCCCGTTATTAGGATTACTACGGTGGAAGAAGGGATCCACCATTGCAATGCCAGTAACTTCGGACTCCAGGGCTGTGTGTTCACAAAGGACATCAACAAGGCCATTTTGATCGGTGATGCAATGGAGACGGGAACTGTTCAAATAAACTCCGCACCTGCTCGTGGACCAGATCATTTTCCGTTCCAGGGCATAAAGGACAGTGGAATCGGGTCCCAAGGAATCACCAACAGCATCAACATGATGACCAAGATCAAGACCACTGTAATCAACTTGCCAACCCCTTCTTACACCATGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00010 ko00030 ko01100 ko01120 ko01200 map00010 map00030 map01100 map01120 map01200
Pfam Domains
Protein Families
Aldedh

Protein Analysis

294

Amino Acids

31.12

Weight (kDa)

5.37

Isoelectric Point (pI)

31.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 1 - 280 1.9e-91 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 745
Acc36I ACCTGC 1 cut(s) 745
AccII CGCG 1 cut(s) 338
AciI CCGC 2 cut(s) 273, 732
AclWI GGATC 3 cut(s) 73, 610, 623
AcsI RAATTY 1 cut(s) 427
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 2 cut(s) 286, 488
AfiI CCNNNNNNNGG 4 cut(s) 232, 591, 743, 767
AgsI TTSAA 3 cut(s) 215, 437, 722
AjnI CCWGG 4 cut(s) 97, 330, 648, 765
AluBI AGCT 2 cut(s) 48, 117
AluI AGCT 2 cut(s) 48, 117
Alw26I GTCTC 2 cut(s) 489, 701
AlwI GGATC 3 cut(s) 73, 610, 623
AoxI GGCC 4 cut(s) 37, 512, 536, 681
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 427
AspS9I GGNCC 4 cut(s) 374, 572, 746, 792
AsuHPI GGTGA 4 cut(s) 140, 319, 707, 796
AsuII TTCGAA 1 cut(s) 149
AvaII GGWCC 4 cut(s) 374, 572, 746, 792
BamHI GGATCC 1 cut(s) 615
BauI CACGAG 2 cut(s) 351, 741
BbvI GCAGC 1 cut(s) 251
BccI CCATC 2 cut(s) 172, 304
BceAI ACGGC 1 cut(s) 514
BciT130I CCWGG 4 cut(s) 99, 332, 650, 767
BcoDI GTCTC 2 cut(s) 489, 701
BfaI CTAG 1 cut(s) 227
BfuAI ACCTGC 1 cut(s) 745
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
Bme1390I CCNGG 4 cut(s) 99, 332, 650, 767
Bme18I GGWCC 4 cut(s) 374, 572, 746, 792
BmgT120I GGNCC 4 cut(s) 374, 572, 746, 792
BmiI GGNNCC 3 cut(s) 617, 793, 794
BmrFI CCNGG 4 cut(s) 99, 332, 650, 767
BmrI ACTGGG 1 cut(s) 66
BmsI GCATC 7 cut(s) 103, 187, 208, 316, 442, 688, 822
BmuI ACTGGG 1 cut(s) 66
BpmI CTGGAG 2 cut(s) 120, 632
Bpu14I TTCGAA 1 cut(s) 149
Bsa29I ATCGAT 1 cut(s) 168
BsaJI CCNNGG 5 cut(s) 330, 649, 766, 796, 873
Bsc4I CCNNNNNNNGG 4 cut(s) 232, 591, 743, 767
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 4 cut(s) 61, 127, 575, 633
Bse3DI GCAATG 5 cut(s) 7, 138, 622, 634, 708
BseBI CCWGG 4 cut(s) 99, 332, 650, 767
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 5 cut(s) 330, 649, 766, 796, 873
BseGI GGATG 2 cut(s) 94, 457
BseLI CCNNNNNNNGG 4 cut(s) 232, 591, 743, 767
BseMI GCAATG 5 cut(s) 7, 138, 622, 634, 708
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 4 cut(s) 61, 127, 575, 633
BseXI GCAGC 1 cut(s) 251
Bsh1236I CGCG 1 cut(s) 338
BshFI GGCC 4 cut(s) 39, 514, 538, 683
BshVI ATCGAT 1 cut(s) 168
BsiSI CCGG 2 cut(s) 135, 539
BslFI GGGAC 1 cut(s) 778
BslI CCNNNNNNNGG 4 cut(s) 232, 591, 743, 767
BsmAI GTCTC 2 cut(s) 489, 701
BsmBI CGTCTC 2 cut(s) 489, 701
BsmFI GGGAC 1 cut(s) 778
BsmI GAATGC 1 cut(s) 352
BsnI GGCC 4 cut(s) 39, 514, 538, 683
Bsp119I TTCGAA 1 cut(s) 149
Bsp143I GATC 8 cut(s) 65, 72, 165, 169, 615, 690, 751, 831
Bsp19I CCATGG 1 cut(s) 873
Bsp68I TCGCGA 1 cut(s) 338
BspACI CCGC 2 cut(s) 273, 732
BspANI GGCC 4 cut(s) 39, 514, 538, 683
BspCNI CTCAG 1 cut(s) 61
BspDI ATCGAT 1 cut(s) 168
BspFNI CGCG 1 cut(s) 338
BspLI GGNNCC 3 cut(s) 617, 793, 794
BspMI ACCTGC 1 cut(s) 745
BspPI GGATC 3 cut(s) 73, 610, 623
BspQI GCTCTTC 1 cut(s) 555
BspT104I TTCGAA 1 cut(s) 149
BsrDI GCAATG 5 cut(s) 7, 138, 622, 634, 708
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 4 cut(s) 61, 127, 575, 633
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 5 cut(s) 330, 649, 766, 796, 873
BssMI GATC 8 cut(s) 65, 72, 165, 169, 615, 690, 751, 831
BssSI CACGAG 2 cut(s) 351, 741
BssT1I CCWWGG 2 cut(s) 796, 873
Bst2BI CACGAG 2 cut(s) 351, 741
Bst2UI CCWGG 4 cut(s) 99, 332, 650, 767
Bst4CI ACNGT 5 cut(s) 370, 604, 718, 782, 844
Bst6I CTCTTC 1 cut(s) 555
BstBI TTCGAA 1 cut(s) 149
BstC8I GCNNGC 2 cut(s) 160, 202
BstDEI CTNAG 1 cut(s) 69
BstDSI CCRYGG 1 cut(s) 873
BstF5I GGATG 2 cut(s) 94, 457
BstFNI CGCG 1 cut(s) 338
BstKTI GATC 8 cut(s) 68, 75, 168, 172, 618, 693, 754, 834
BstMAI GTCTC 2 cut(s) 489, 701
BstMBI GATC 8 cut(s) 65, 72, 165, 169, 615, 690, 751, 831
BstMWI GCNNNNNNNGC 3 cut(s) 45, 335, 356
BstNI CCWGG 4 cut(s) 99, 332, 650, 767
BstNSI RCATGY 1 cut(s) 204
BstSCI CCNGG 4 cut(s) 97, 330, 648, 765
BstUI CGCG 1 cut(s) 338
BstV1I GCAGC 1 cut(s) 251
BstX2I RGATCY 2 cut(s) 65, 615
BstXI CCANNNNNNTGG 1 cut(s) 23
BstYI RGATCY 2 cut(s) 65, 615
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 4 cut(s) 39, 514, 538, 683
BsuTUI ATCGAT 1 cut(s) 168
BtgI CCRYGG 1 cut(s) 873
BtsCI GGATG 2 cut(s) 94, 457
BtsIMutI CAGTG 4 cut(s) 54, 120, 787, 840
BtuMI TCGCGA 1 cut(s) 338
BveI ACCTGC 1 cut(s) 745
Cac8I GCNNGC 2 cut(s) 160, 202
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 4 cut(s) 374, 572, 746, 792
ClaI ATCGAT 1 cut(s) 168
Csp6I GTAC 2 cut(s) 285, 487
CviAII CATG 7 cut(s) 91, 163, 201, 544, 555, 820, 874
CviQI GTAC 2 cut(s) 285, 487
DdeI CTNAG 1 cut(s) 69
DpnI GATC 8 cut(s) 67, 74, 167, 171, 617, 692, 753, 833
DpnII GATC 8 cut(s) 65, 72, 165, 169, 615, 690, 751, 831
Eam1104I CTCTTC 1 cut(s) 555
EarI CTCTTC 1 cut(s) 555
Eco130I CCWWGG 2 cut(s) 796, 873
Eco147I AGGCCT 1 cut(s) 39
Eco47I GGWCC 4 cut(s) 374, 572, 746, 792
Eco57I CTGAAG 1 cut(s) 158
EcoO109I RGGNCCY 1 cut(s) 792
EcoRII CCWGG 4 cut(s) 97, 330, 648, 765
EcoT14I CCWWGG 2 cut(s) 796, 873
EcoT22I ATGCAT 3 cut(s) 96, 202, 206
ErhI CCWWGG 2 cut(s) 796, 873
Esp3I CGTCTC 2 cut(s) 489, 701
FaeI CATG 7 cut(s) 94, 166, 204, 547, 558, 823, 877
FaiI YATR 9 cut(s) 92, 164, 202, 248, 545, 556, 773, 821, 875
FalI AAGNNNNNCTT 4 cut(s) 245, 277, 287, 319
FaqI GGGAC 1 cut(s) 778
FatI CATG 7 cut(s) 90, 162, 200, 543, 554, 819, 873
Fnu4HI GCNGC 1 cut(s) 240
FokI GGATG 2 cut(s) 81, 464
Fsp4HI GCNGC 1 cut(s) 240
FspBI CTAG 1 cut(s) 227
GluI GCNGC 1 cut(s) 240
GsuI CTGGAG 2 cut(s) 120, 632
HaeIII GGCC 4 cut(s) 39, 514, 538, 683
HapII CCGG 2 cut(s) 135, 539
Hin1II CATG 7 cut(s) 94, 166, 204, 547, 558, 823, 877
HinfI GANTC 5 cut(s) 314, 416, 645, 786, 801
HpaII CCGG 2 cut(s) 135, 539
HphI GGTGA 4 cut(s) 140, 319, 707, 796
Hpy166II GTNNAC 4 cut(s) 106, 377, 663, 746
Hpy188I TCNGA 4 cut(s) 70, 177, 415, 644
Hpy188III TCNNGA 2 cut(s) 337, 835
Hpy8I GTNNAC 4 cut(s) 106, 377, 663, 746
HpyAV CCTTC 4 cut(s) 431, 457, 605, 873
HpyCH4III ACNGT 5 cut(s) 370, 604, 718, 782, 844
HpyF10VI GCNNNNNNNGC 3 cut(s) 45, 335, 356
HpyF3I CTNAG 1 cut(s) 69
Hsp92II CATG 7 cut(s) 94, 166, 204, 547, 558, 823, 877
KflI GGGWCCC 1 cut(s) 792
Kzo9I GATC 8 cut(s) 65, 72, 165, 169, 615, 690, 751, 831
LguI GCTCTTC 1 cut(s) 555
LmnI GCTCC 1 cut(s) 467
Lsp1109I GCAGC 1 cut(s) 251
LweI GCATC 7 cut(s) 103, 187, 208, 316, 442, 688, 822
MaeI CTAG 1 cut(s) 227
MaeIII GTNAC 3 cut(s) 52, 128, 635
MalI GATC 8 cut(s) 67, 74, 167, 171, 617, 692, 753, 833
MboI GATC 8 cut(s) 65, 72, 165, 169, 615, 690, 751, 831
MboII GAAGA 4 cut(s) 164, 227, 572, 620
MflI RGATCY 2 cut(s) 65, 615
MluCI AATT 4 cut(s) 144, 362, 427, 549
MlyI GAGTC 1 cut(s) 639
MnlI CCTC 3 cut(s) 182, 251, 376
Mph1103I ATGCAT 3 cut(s) 96, 202, 206
MseI TTAA 2 cut(s) 294, 365
MslI CAYNNNNRTG 2 cut(s) 627, 818
MspA1I CMGCKG 1 cut(s) 273
MspI CCGG 2 cut(s) 135, 539
MspR9I CCNGG 4 cut(s) 99, 332, 650, 767
Mva1269I GAATGC 1 cut(s) 352
MvaI CCWGG 4 cut(s) 99, 332, 650, 767
MvnI CGCG 1 cut(s) 338
MwoI GCNNNNNNNGC 3 cut(s) 45, 335, 356
NcoI CCATGG 1 cut(s) 873
NdeII GATC 8 cut(s) 65, 72, 165, 169, 615, 690, 751, 831
NlaIII CATG 7 cut(s) 94, 166, 204, 547, 558, 823, 877
NlaIV GGNNCC 3 cut(s) 617, 793, 794
NmuCI GTSAC 2 cut(s) 52, 128
NruI TCGCGA 1 cut(s) 338
NsiI ATGCAT 3 cut(s) 96, 202, 206
NspI RCATGY 1 cut(s) 204
NspV TTCGAA 1 cut(s) 149
PaeI GCATGC 1 cut(s) 204
PaqCI CACCTGC 1 cut(s) 745
PceI AGGCCT 1 cut(s) 39
PciSI GCTCTTC 1 cut(s) 555
PctI GAATGC 1 cut(s) 352
PfeI GAWTC 4 cut(s) 314, 416, 786, 801
PfoI TCCNGGA 1 cut(s) 97
PkrI GCNGC 1 cut(s) 241
PleI GAGTC 1 cut(s) 639
PpsI GAGTC 1 cut(s) 639
PpuMI RGGWCCY 1 cut(s) 792
Psp5II RGGWCCY 1 cut(s) 792
Psp6I CCWGG 4 cut(s) 97, 330, 648, 765
PspGI CCWGG 4 cut(s) 97, 330, 648, 765
PspN4I GGNNCC 3 cut(s) 617, 793, 794
PspPI GGNCC 4 cut(s) 374, 572, 746, 792
PspPPI RGGWCCY 1 cut(s) 792
PsuI RGATCY 2 cut(s) 65, 615
RruI TCGCGA 1 cut(s) 338
RsaI GTAC 2 cut(s) 286, 488
RsaNI GTAC 2 cut(s) 285, 487
RseI CAYNNNNRTG 2 cut(s) 627, 818
SapI GCTCTTC 1 cut(s) 555
SaqAI TTAA 2 cut(s) 294, 365
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 8 cut(s) 65, 72, 165, 169, 615, 690, 751, 831
Sau96I GGNCC 4 cut(s) 374, 572, 746, 792
SchI GAGTC 1 cut(s) 639
ScrFI CCNGG 4 cut(s) 99, 332, 650, 767
SetI ASST 7 cut(s) 50, 119, 228, 300, 442, 507, 739
SfaNI GCATC 7 cut(s) 103, 187, 208, 316, 442, 688, 822
SfuI TTCGAA 1 cut(s) 149
SinI GGWCC 4 cut(s) 374, 572, 746, 792
SmiMI CAYNNNNRTG 2 cut(s) 627, 818
SphI GCATGC 1 cut(s) 204
Sse9I AATT 4 cut(s) 144, 362, 427, 549
SseBI AGGCCT 1 cut(s) 39
SsiI CCGC 2 cut(s) 273, 732
SspMI CTAG 1 cut(s) 227
StuI AGGCCT 1 cut(s) 39
StyD4I CCNGG 4 cut(s) 97, 330, 648, 765
StyI CCWWGG 2 cut(s) 796, 873
TaaI ACNGT 5 cut(s) 370, 604, 718, 782, 844
TaqI TCGA 2 cut(s) 149, 168
TaqII GACCGA 1 cut(s) 560
TasI AATT 4 cut(s) 144, 362, 427, 549
TatI WGTACW 2 cut(s) 284, 486
TfiI GAWTC 4 cut(s) 314, 416, 786, 801
Tru1I TTAA 2 cut(s) 294, 365
Tru9I TTAA 2 cut(s) 294, 365
TscAI CASTG 4 cut(s) 61, 127, 787, 847
TseFI GTSAC 2 cut(s) 52, 128
TseI GCWGC 1 cut(s) 239
Tsp45I GTSAC 2 cut(s) 52, 128
TspGWI ACGGA 2 cut(s) 307, 750
TspRI CASTG 4 cut(s) 61, 127, 787, 847
VpaK11BI GGWCC 4 cut(s) 374, 572, 746, 792
XapI RAATTY 1 cut(s) 427
XceI RCATGY 1 cut(s) 204
XspI CTAG 1 cut(s) 227
Zsp2I ATGCAT 3 cut(s) 96, 202, 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.