Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008134

Physical Location & Seq

Genomic Coordinates Forward (+)

10819043 .. 10820941

Gene Structure 1899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGTTTGTCAATCCCTATAGTTTCATTCTAAATTTCCATCATTTCTATCGAAAACAACCGATATTCGATATATCCATTGATATATCCAAGTACTACTCTCTTCTTTTAACTTATCCTCCTTTCTCTCATCTTTCCCTCACTCTCTCTATATATGTATATCCAGTGAGCTTTGCCTGCACAAAGAGGCAGCTGAAAATGGAGGTAACCAACAGGTACATTACTATAAAATCCCCCCTCGACGACGGAGAACCGAAAGAGTCAGACTTTGAGGTCAAAACTTCACCCCTTGCTCTATCAGTTTCCGCTGGTTCCACTGATGTCATCGTGAAAAATCTCTATGTGTCGATCGATCCGTACCAGCTCAACCGCATGAAAAGGTTCAGCTCCTCCCACAAAACCATAAATTATGTAGCTGCCGTCGCCCCAGGAGATGAAATTGATGCTTATGGTGTGGCAAAAGTTGTGGCTTCTGGGAATCCAGAGTTTGAGAAGGATGACTTGGTTGTGGGGTTCATCAGTTGGGGAGAGTACACTGTTCTAAAAAAAGGGACCATGTTTAGGAAATTTGACCCTTTAGGATTTCCACTTTCTTATCAAGTTGGAATTCTAGGTTTTAGTGGACTTACAGCATATGGGGGATTTTTTGAAGTGTGCAAGCCTAAAAAGGGGGAGAAAGTTTTCGTATCTGCAGCTTCTGGATCGGTTGCAAATTTGGTCGGACAGTACGCAAAACTCTTCGGTTGCTATGTTGTTGGCTGTGCCGGAAGCAAAGAAAAGGTCACATTGCTCAAGGGAAAGCTCGGATTCGATGATGCCTTCAACTACAAGGAAGAGCCTGATTTAAAGTCAACTCTCAAAAAGTACTTCCCGGATGGGATTGATATATATTTTGACAATGTGGGAGCTGAGATGCTGGAAGCAGCAGTTGAGAACATGAACACCTTCGGTAGGGTTGCTGTCTGCGGCATGATTTCTGAGTACACAGATGCCGGAAAGCGAGCTGCGCCAAATATGCTAGACGTTGTTTACAAGAGAATTAAGATCCAAGGGTTTTTAGCACCTGATCTCATGAATGTGCACTTTGATTTTATCTCCACCACCGTGGATCATCTTCGCACGGGCAATTTGCAAGCGGTTGAAGACATCTCGTGTGGTTTGGAGAGTTTTCCATCTGCTTTCATTGGACTTTTTCGGGGTCATAACACCGGAAAGAAAATGATTAAGGTTGCAGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N_2 ADH_zinc_N

Protein Analysis

413

Amino Acids

45.73

Weight (kDa)

7.04

Isoelectric Point (pI)

24.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N_2	PF16884	81 - 185	1e-17	N-terminal domain of oxidoreductase
ADH_zinc_N	PF00107	237 - 354	1.7e-21	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	267 - 404	2.1e-06	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03870
malus_domestica	MD15G1173200.v1.1 MD15G1173400.v1.1
prunus_persica	Prupe.7G242400_v2.0.a1 Prupe.7G242400_v2.0.a1
pyrus_communis	pycom15g15510 pycom15g15530 pycom15g15540
rosa_chinensis	RchiOBHm_Chr2g0088551 RchiOBHm_Chr2g0088561
rosa_laevigata	RLG00000015962 RLG00000015965
rosa_multiflora	Rmu_co8462133.1_g000001 Rmu_sc0004733.1_g000007 Rmu_sc0041148.1_g000001 Rmu_sc0041185.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152610
rosa_rugosa	Rorug01G0485000 Rorug01G0485100
rosa_samantha	Rh2AG039800 Rh2CG039900 Rh2DG039200
rosa_wichuraiana	Rw2G003110 Rw2G003130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	269
AciI	CCGC	4 cut(s)	303, 367, 963, 1133
AclWI	GGATC	4 cut(s)	344, 706, 1036, 1113
AcsI	RAATTY	4 cut(s)	31, 563, 603, 709
AfaI	GTAC	7 cut(s)	92, 215, 356, 530, 725, 863, 980
AfiI	CCNNNNNNNGG	3 cut(s)	558, 665, 948
AgsI	TTSAA	3 cut(s)	647, 820, 1139
AjnI	CCWGG	1 cut(s)	424
AjuI	GAANNNNNNNTTGG	2 cut(s)	482, 514
AleI	CACNNNNGTG	1 cut(s)	1100
AluBI	AGCT	9 cut(s)	168, 190, 361, 384, 413, 692, 799, 905, 1001
AluI	AGCT	9 cut(s)	168, 190, 361, 384, 413, 692, 799, 905, 1001
Alw21I	GWGCWC	1 cut(s)	1080
Alw44I	GTGCAC	1 cut(s)	1076
AlwI	GGATC	4 cut(s)	344, 706, 1036, 1113
AlwNI	CAGNNNCTG	1 cut(s)	695
ApaLI	GTGCAC	1 cut(s)	1076
ApeKI	GCWGC	5 cut(s)	187, 413, 689, 920, 1001
ApoI	RAATTY	4 cut(s)	31, 563, 603, 709
ArsI	GACNNNNNNTTYG	2 cut(s)	762, 794
Asp700I	GAANNNNTTC	3 cut(s)	377, 677, 941
AspLEI	GCGC	1 cut(s)	1006
AspS9I	GGNCC	1 cut(s)	549
AsuC2I	CCSGG	1 cut(s)	869
AsuHPI	GGTGA	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	549
BaeGI	GKGCMC	1 cut(s)	1080
BauI	CACGAG	1 cut(s)	1147
BbsI	GAAGAC	1 cut(s)	1146
Bbv12I	GWGCWC	1 cut(s)	1080
BbvI	GCAGC	5 cut(s)	199, 400, 701, 932, 988
BccI	CCATC	3 cut(s)	45, 866, 1177
BceAI	ACGGC	1 cut(s)	401
BciT130I	CCWGG	1 cut(s)	426
BcnI	CCSGG	1 cut(s)	869
BfaI	CTAG	2 cut(s)	608, 1016
BfmI	CTRYAG	2 cut(s)	16, 687
BisI	GCNGC	6 cut(s)	188, 414, 690, 921, 964, 1002
BlsI	GCNGC	6 cut(s)	189, 415, 691, 922, 965, 1003
BmcAI	AGTACT	2 cut(s)	92, 863
Bme1390I	CCNGG	2 cut(s)	426, 869
Bme18I	GGWCC	1 cut(s)	549
BmgT120I	GGNCC	1 cut(s)	549
BmiI	GGNNCC	2 cut(s)	310, 550
BmrFI	CCNGG	2 cut(s)	426, 869
BmsI	GCATC	4 cut(s)	430, 802, 900, 976
BpiI	GAAGAC	1 cut(s)	1146
BpuEI	CTTGAG	1 cut(s)	773
BpuMI	CCSGG	1 cut(s)	869
Bsa29I	ATCGAT	1 cut(s)	348
BsaJI	CCNNGG	3 cut(s)	424, 1045, 1101
BsaWI	WCCGGW	1 cut(s)	1205
BsaXI	ACNNNNNCTCC	2 cut(s)	100, 130
Bsc4I	CCNNNNNNNGG	3 cut(s)	558, 665, 948
Bse1I	ACTGG	1 cut(s)	161
Bse3DI	GCAATG	1 cut(s)	782
BseBI	CCWGG	1 cut(s)	426
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	3 cut(s)	424, 1045, 1101
BseGI	GGATG	2 cut(s)	499, 877
BseLI	CCNNNNNNNGG	3 cut(s)	558, 665, 948
BseMI	GCAATG	1 cut(s)	782
BseMII	CTCAG	2 cut(s)	897, 966
BseNI	ACTGG	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	376
BseSI	GKGCMC	1 cut(s)	1080
BseXI	GCAGC	5 cut(s)	199, 400, 701, 932, 988
BsgI	GTGCAG	1 cut(s)	160
Bsh1285I	CGRYCG	1 cut(s)	348
BshVI	ATCGAT	1 cut(s)	348
BsiEI	CGRYCG	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	1080
BsiSI	CCGG	4 cut(s)	762, 869, 990, 1206
BslFI	GGGAC	1 cut(s)	562
BslI	CCNNNNNNNGG	3 cut(s)	558, 665, 948
BsmFI	GGGAC	1 cut(s)	562
Bsp1286I	GDGCHC	1 cut(s)	1080
Bsp143I	GATC	6 cut(s)	345, 349, 698, 1041, 1063, 1105
BspACI	CCGC	4 cut(s)	303, 367, 963, 1133
BspCNI	CTCAG	2 cut(s)	898, 967
BspDI	ATCGAT	1 cut(s)	348
BspHI	TCATGA	1 cut(s)	1068
BspLI	GGNNCC	2 cut(s)	310, 550
BspMAI	CTGCAG	1 cut(s)	691
BspPI	GGATC	4 cut(s)	344, 706, 1036, 1113
BspQI	GCTCTTC	1 cut(s)	825
BsrDI	GCAATG	1 cut(s)	782
BsrI	ACTGG	1 cut(s)	161
BssECI	CCNNGG	3 cut(s)	424, 1045, 1101
BssMI	GATC	6 cut(s)	345, 349, 698, 1041, 1063, 1105
BssSI	CACGAG	1 cut(s)	1147
BssT1I	CCWWGG	1 cut(s)	1045
Bst2BI	CACGAG	1 cut(s)	1147
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	3 cut(s)	535, 723, 1102
Bst6I	CTCTTC	3 cut(s)	105, 740, 825
BstC8I	GCNNGC	4 cut(s)	175, 656, 999, 1131
BstDEI	CTNAG	2 cut(s)	906, 975
BstDSI	CCRYGG	1 cut(s)	1101
BstEII	GGTNACC	1 cut(s)	202
BstENI	CCTNNNNNAGG	1 cut(s)	946
BstF5I	GGATG	2 cut(s)	499, 877
BstHHI	GCGC	1 cut(s)	1006
BstKTI	GATC	6 cut(s)	348, 352, 701, 1044, 1066, 1108
BstMBI	GATC	6 cut(s)	345, 349, 698, 1041, 1063, 1105
BstMCI	CGRYCG	1 cut(s)	348
BstMWI	GCNNNNNNNGC	4 cut(s)	174, 419, 1003, 1012
BstNI	CCWGG	1 cut(s)	426
BstPI	GGTNACC	1 cut(s)	202
BstSCI	CCNGG	2 cut(s)	424, 867
BstSFI	CTRYAG	2 cut(s)	16, 687
BstSLI	GKGCMC	1 cut(s)	1080
BstV1I	GCAGC	5 cut(s)	199, 400, 701, 932, 988
BstV2I	GAAGAC	1 cut(s)	1146
BstX2I	RGATCY	1 cut(s)	1041
BstXI	CCANNNNNNTGG	1 cut(s)	1102
BstYI	RGATCY	1 cut(s)	1041
Bsu15I	ATCGAT	1 cut(s)	348
BsuTUI	ATCGAT	1 cut(s)	348
BtgI	CCRYGG	1 cut(s)	1101
BtsCI	GGATG	2 cut(s)	499, 877
BtsIMutI	CAGTG	3 cut(s)	168, 312, 531
Cac8I	GCNNGC	4 cut(s)	175, 656, 999, 1131
CaiI	CAGNNNCTG	1 cut(s)	695
CciI	TCATGA	1 cut(s)	1068
CfoI	GCGC	1 cut(s)	1006
Cfr13I	GGNCC	1 cut(s)	549
ClaI	ATCGAT	1 cut(s)	348
Csp6I	GTAC	7 cut(s)	91, 214, 355, 529, 724, 862, 979
CspCI	CAANNNNNGTGG	2 cut(s)	444, 479
CviAII	CATG	5 cut(s)	370, 553, 934, 967, 1069
CviQI	GTAC	7 cut(s)	91, 214, 355, 529, 724, 862, 979
DdeI	CTNAG	2 cut(s)	906, 975
DpnI	GATC	6 cut(s)	347, 351, 700, 1043, 1065, 1107
DpnII	GATC	6 cut(s)	345, 349, 698, 1041, 1063, 1105
DraI	TTTAAA	1 cut(s)	843
DrdI	GACNNNNNNGTC	1 cut(s)	269
DseDI	GACNNNNNNGTC	1 cut(s)	269
Eam1104I	CTCTTC	3 cut(s)	105, 740, 825
EarI	CTCTTC	3 cut(s)	105, 740, 825
Eco130I	CCWWGG	1 cut(s)	1045
Eco47I	GGWCC	1 cut(s)	549
Eco91I	GGTNACC	1 cut(s)	202
EcoNI	CCTNNNNNAGG	1 cut(s)	946
EcoO65I	GGTNACC	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	603
EcoRII	CCWGG	1 cut(s)	424
EcoT14I	CCWWGG	1 cut(s)	1045
ErhI	CCWWGG	1 cut(s)	1045
FaeI	CATG	5 cut(s)	373, 556, 937, 970, 1072
FalI	AAGNNNNNCTT	2 cut(s)	482, 514
FaqI	GGGAC	1 cut(s)	562
FatI	CATG	5 cut(s)	369, 552, 933, 966, 1068
FauNDI	CATATG	1 cut(s)	631
Fnu4HI	GCNGC	6 cut(s)	188, 414, 690, 921, 964, 1002
FokI	GGATG	2 cut(s)	506, 884
Fsp4HI	GCNGC	6 cut(s)	188, 414, 690, 921, 964, 1002
FspBI	CTAG	2 cut(s)	608, 1016
GlaI	GCGC	1 cut(s)	1005
GluI	GCNGC	6 cut(s)	188, 414, 690, 921, 964, 1002
HapII	CCGG	4 cut(s)	762, 869, 990, 1206
HhaI	GCGC	1 cut(s)	1006
Hin1II	CATG	5 cut(s)	373, 556, 937, 970, 1072
Hin6I	GCGC	1 cut(s)	1004
HinP1I	GCGC	1 cut(s)	1004
HincII	GTYRAC	1 cut(s)	849
HindII	GTYRAC	1 cut(s)	849
HinfI	GANTC	3 cut(s)	257, 475, 804
HpaII	CCGG	4 cut(s)	762, 869, 990, 1206
HphI	GGTGA	1 cut(s)	273
Hpy166II	GTNNAC	6 cut(s)	531, 620, 849, 981, 1027, 1078
Hpy188I	TCNGA	4 cut(s)	262, 719, 803, 976
Hpy188III	TCNNGA	4 cut(s)	325, 479, 696, 1069
Hpy8I	GTNNAC	6 cut(s)	531, 620, 849, 981, 1027, 1078
Hpy99I	CGWCG	3 cut(s)	242, 245, 422
HpyAV	CCTTC	3 cut(s)	484, 826, 952
HpyCH4III	ACNGT	3 cut(s)	535, 723, 1102
HpyCH4IV	ACGT	1 cut(s)	1020
HpyCH4V	TGCA	7 cut(s)	177, 654, 689, 707, 1078, 1129, 1229
HpyF10VI	GCNNNNNNNGC	4 cut(s)	174, 419, 1003, 1012
HpyF3I	CTNAG	2 cut(s)	906, 975
HpySE526I	ACGT	1 cut(s)	1020
Hsp92II	CATG	5 cut(s)	373, 556, 937, 970, 1072
HspAI	GCGC	1 cut(s)	1004
Kzo9I	GATC	6 cut(s)	345, 349, 698, 1041, 1063, 1105
LguI	GCTCTTC	1 cut(s)	825
LmnI	GCTCC	2 cut(s)	389, 902
Lsp1109I	GCAGC	5 cut(s)	199, 400, 701, 932, 988
LweI	GCATC	4 cut(s)	430, 802, 900, 976
MaeI	CTAG	2 cut(s)	608, 1016
MaeII	ACGT	1 cut(s)	1020
MaeIII	GTNAC	2 cut(s)	202, 778
MalI	GATC	6 cut(s)	347, 351, 700, 1043, 1065, 1107
MboI	GATC	6 cut(s)	345, 349, 698, 1041, 1063, 1105
MboII	GAAGA	5 cut(s)	92, 727, 842, 1103, 1151
MflI	RGATCY	1 cut(s)	1041
MhlI	GDGCHC	1 cut(s)	1080
MluCI	AATT	8 cut(s)	31, 403, 435, 563, 603, 709, 1035, 1123
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	2 cut(s)	580, 697
MnlI	CCTC	7 cut(s)	126, 146, 177, 193, 245, 262, 397
MroXI	GAANNNNTTC	3 cut(s)	377, 677, 941
MseI	TTAA	4 cut(s)	107, 842, 1038, 1221
MslI	CAYNNNNRTG	2 cut(s)	1073, 1100
MspA1I	CMGCKG	2 cut(s)	190, 305
MspI	CCGG	4 cut(s)	762, 869, 990, 1206
MspR9I	CCNGG	2 cut(s)	426, 869
MvaI	CCWGG	1 cut(s)	426
MwoI	GCNNNNNNNGC	4 cut(s)	174, 419, 1003, 1012
NciI	CCSGG	1 cut(s)	869
NdeI	CATATG	1 cut(s)	631
NdeII	GATC	6 cut(s)	345, 349, 698, 1041, 1063, 1105
NlaIII	CATG	5 cut(s)	373, 556, 937, 970, 1072
NlaIV	GGNNCC	2 cut(s)	310, 550
NmuCI	GTSAC	1 cut(s)	778
OliI	CACNNNNGTG	1 cut(s)	1100
PagI	TCATGA	1 cut(s)	1068
PciSI	GCTCTTC	1 cut(s)	825
PcsI	WCGNNNNNNNCGW	1 cut(s)	350
PdmI	GAANNNNTTC	3 cut(s)	377, 677, 941
PfeI	GAWTC	2 cut(s)	475, 804
PfoI	TCCNGGA	1 cut(s)	867
PkrI	GCNGC	6 cut(s)	189, 415, 691, 922, 965, 1003
Ple19I	CGATCG	1 cut(s)	348
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	424
PspEI	GGTNACC	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	2 cut(s)	310, 550
PspPI	GGNCC	1 cut(s)	549
PstI	CTGCAG	1 cut(s)	691
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	1041
PvuI	CGATCG	1 cut(s)	348
PvuII	CAGCTG	1 cut(s)	190
RsaI	GTAC	7 cut(s)	92, 215, 356, 530, 725, 863, 980
RsaNI	GTAC	7 cut(s)	91, 214, 355, 529, 724, 862, 979
RseI	CAYNNNNRTG	2 cut(s)	1073, 1100
SapI	GCTCTTC	1 cut(s)	825
SaqAI	TTAA	4 cut(s)	107, 842, 1038, 1221
SatI	GCNGC	6 cut(s)	188, 414, 690, 921, 964, 1002
Sau3AI	GATC	6 cut(s)	345, 349, 698, 1041, 1063, 1105
Sau96I	GGNCC	1 cut(s)	549
ScaI	AGTACT	2 cut(s)	92, 863
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	2 cut(s)	426, 869
SduI	GDGCHC	1 cut(s)	1080
SfaNI	GCATC	4 cut(s)	430, 802, 900, 976
SfcI	CTRYAG	2 cut(s)	16, 687
SinI	GGWCC	1 cut(s)	549
SmiMI	CAYNNNNRTG	2 cut(s)	1073, 1100
SmlI	CTYRAG	1 cut(s)	788
SmoI	CTYRAG	1 cut(s)	788
Sse9I	AATT	8 cut(s)	31, 403, 435, 563, 603, 709, 1035, 1123
SsiI	CCGC	4 cut(s)	303, 367, 963, 1133
SspMI	CTAG	2 cut(s)	608, 1016
StyD4I	CCNGG	2 cut(s)	424, 867
StyI	CCWWGG	1 cut(s)	1045
TaaI	ACNGT	3 cut(s)	535, 723, 1102
TaiI	ACGT	1 cut(s)	1023
TaqI	TCGA	6 cut(s)	49, 66, 237, 344, 348, 807
TasI	AATT	8 cut(s)	31, 403, 435, 563, 603, 709, 1035, 1123
TatI	WGTACW	4 cut(s)	90, 528, 861, 978
TauI	GCSGC	1 cut(s)	966
TfiI	GAWTC	2 cut(s)	475, 804
Tru1I	TTAA	4 cut(s)	107, 842, 1038, 1221
Tru9I	TTAA	4 cut(s)	107, 842, 1038, 1221
TscAI	CASTG	3 cut(s)	168, 319, 538
TseFI	GTSAC	1 cut(s)	778
TseI	GCWGC	5 cut(s)	187, 413, 689, 920, 1001
Tsp45I	GTSAC	1 cut(s)	778
TspDTI	ATGAA	7 cut(s)	13, 386, 447, 502, 950, 1085, 1168
TspGWI	ACGGA	2 cut(s)	258, 342
TspRI	CASTG	3 cut(s)	168, 319, 538
VneI	GTGCAC	1 cut(s)	1076
VpaK11BI	GGWCC	1 cut(s)	549
XagI	CCTNNNNNAGG	1 cut(s)	946
XapI	RAATTY	4 cut(s)	31, 563, 603, 709
XmnI	GAANNNNTTC	3 cut(s)	377, 677, 941
XspI	CTAG	2 cut(s)	608, 1016
ZrmI	AGTACT	2 cut(s)	92, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.